Wall clock time and date at job start Mon Mar 30 2020 02:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47010 * 111.00219 * 2 1 4 4 C 1.53097 * 109.25920 * 182.39186 * 3 2 1 5 5 O 1.43020 * 109.25666 * 303.15166 * 4 3 2 6 6 C 1.43009 * 113.74107 * 58.66820 * 5 4 3 7 7 C 1.47014 * 110.99446 * 123.63443 * 2 1 3 8 8 H 1.09003 * 109.50937 * 297.57900 * 7 2 1 9 9 C 1.52995 * 109.51039 * 57.67130 * 7 2 1 10 10 N 1.46900 * 109.47230 * 183.48313 * 9 7 2 11 11 C 1.46897 * 111.00205 * 185.19157 * 10 9 7 12 12 C 1.52998 * 109.47225 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47139 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00099 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00004 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99977 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99834 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47248 * 90.00508 * 17 15 13 19 19 H 1.48503 * 109.46982 * 209.99813 * 17 15 13 20 20 H 1.48496 * 109.47219 * 329.99865 * 17 15 13 21 21 H 1.08998 * 109.47147 * 290.05139 * 1 2 3 22 22 H 1.09005 * 109.46701 * 50.04791 * 1 2 3 23 23 H 1.08998 * 109.47430 * 170.04849 * 1 2 3 24 24 H 1.09005 * 109.50627 * 302.32589 * 3 2 1 25 25 H 1.08997 * 109.50883 * 62.45094 * 3 2 1 26 26 H 1.08997 * 109.50528 * 63.08122 * 4 3 2 27 27 H 1.08991 * 109.50888 * 183.16987 * 4 3 2 28 28 H 1.09003 * 109.50766 * 181.40083 * 6 5 4 29 29 H 1.09002 * 109.50699 * 61.26631 * 6 5 4 30 30 H 1.08995 * 109.47263 * 63.48714 * 9 7 2 31 31 H 1.09001 * 109.47227 * 303.48376 * 9 7 2 32 32 H 1.00904 * 110.99854 * 61.23827 * 10 9 7 33 33 H 1.08992 * 109.47407 * 300.00105 * 11 10 9 34 34 H 1.09003 * 109.46864 * 60.00155 * 11 10 9 35 35 H 1.09000 * 109.47558 * 300.00379 * 12 11 10 36 36 H 1.09003 * 109.46837 * 60.00428 * 12 11 10 37 37 H 0.97001 * 120.00086 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 3.5250 1.3263 -0.0603 5 8 4.0175 0.5573 1.0404 6 6 3.5250 -0.7850 1.0711 7 6 1.9958 -0.7602 1.1428 8 1 1.6821 -0.2846 2.0721 9 6 1.4588 -2.1921 1.0950 10 7 1.9180 -2.9270 2.2812 11 6 1.5247 -4.3406 2.2096 12 6 2.0199 -5.0716 3.4591 13 6 1.6170 -6.5220 3.3853 14 1 1.0628 -6.8858 2.5327 15 6 1.9550 -7.3842 4.4068 16 7 2.6286 -6.9408 5.4457 17 14 1.4549 -9.1817 4.3156 18 1 2.5242 -9.9593 3.6396 19 1 1.2522 -9.7093 5.6889 20 1 0.1909 -9.3054 3.5461 21 1 -0.3633 0.3523 0.9653 22 1 -0.3633 0.6600 -0.7878 23 1 -0.3634 -1.0122 -0.1776 24 1 1.6135 1.9092 -0.8682 25 1 1.6828 1.8826 0.9109 26 1 3.8386 0.8642 -0.9964 27 1 3.9222 2.3397 -0.0038 28 1 3.9221 -1.2985 1.9467 29 1 3.8385 -1.3085 0.1679 30 1 1.8253 -2.6878 0.1962 31 1 0.3691 -2.1712 1.0798 32 1 1.5742 -2.4985 3.1276 33 1 0.4387 -4.4131 2.1522 34 1 1.9666 -4.7962 1.3235 35 1 3.1060 -4.9991 3.5161 36 1 1.5783 -4.6161 4.3455 37 1 2.8661 -7.5473 6.1645 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704022414.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:51 Heat of formation + Delta-G solvation = -45.975658 kcal Electronic energy + Delta-G solvation = -16075.448545 eV Core-core repulsion = 13466.459773 eV Total energy + Delta-G solvation = -2608.988772 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.78850 -36.46495 -35.40362 -33.12638 -31.55125 -29.38118 -28.43068 -25.77645 -24.19556 -23.75472 -21.93950 -20.74253 -19.91816 -16.53849 -16.40765 -16.27761 -15.46746 -15.24469 -14.97212 -14.58381 -14.40953 -13.86886 -13.32171 -13.04592 -12.91820 -12.49799 -12.15453 -11.98984 -11.87278 -11.20553 -11.10883 -10.94755 -10.90805 -10.60449 -10.49096 -10.01732 -9.62833 -9.38269 -9.15405 -8.54256 -8.35241 -7.85754 -5.99713 -4.02434 3.32504 3.38555 3.41521 3.59726 3.88208 4.44218 4.68627 4.74029 4.86767 5.03322 5.07060 5.17658 5.32710 5.33480 5.36379 5.39512 5.51377 5.65768 5.68607 5.80994 5.88705 6.01195 6.18967 6.32498 6.38959 6.78391 6.84365 6.95982 7.16617 7.43322 7.71167 7.80020 7.92282 8.07260 8.42971 9.04790 9.61454 11.11718 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.054110 B = 0.004426 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.343962 B = 6324.096430 C = 6660.489995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.539 5.539 3 C 0.019 3.981 4 C 0.062 3.938 5 O -0.388 6.388 6 C 0.077 3.923 7 C 0.054 3.946 8 H 0.048 0.952 9 C 0.066 3.934 10 N -0.691 5.691 11 C 0.068 3.932 12 C 0.025 3.975 13 C -0.522 4.522 14 H 0.054 0.946 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.026 0.974 22 H 0.066 0.934 23 H 0.074 0.926 24 H 0.083 0.917 25 H 0.040 0.960 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.115 0.885 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.028 0.972 32 H 0.336 0.664 33 H 0.015 0.985 34 H 0.059 0.941 35 H 0.026 0.974 36 H 0.013 0.987 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.248 16.045 -10.769 19.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.264 5.264 3 C -0.109 4.109 4 C -0.015 4.015 5 O -0.307 6.307 6 C 0.001 3.999 7 C -0.055 4.055 8 H 0.066 0.934 9 C -0.064 4.064 10 N -0.322 5.322 11 C -0.060 4.060 12 C -0.013 4.013 13 C -0.561 4.561 14 H 0.072 0.928 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.045 0.955 22 H 0.085 0.915 23 H 0.093 0.907 24 H 0.101 0.899 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.112 0.888 28 H 0.133 0.867 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.046 0.954 32 H 0.153 0.847 33 H 0.033 0.967 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.032 0.968 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.260 15.710 -11.152 19.307 hybrid contribution -1.838 -0.639 0.718 2.074 sum -3.098 15.071 -10.434 18.590 Atomic orbital electron populations 1.22433 0.87176 1.02829 1.00197 1.62187 1.08120 1.13125 1.43009 1.22792 0.96836 0.89898 1.01398 1.22621 0.91976 0.96447 0.90493 1.88004 1.69927 1.24736 1.48001 1.22718 0.91152 0.82434 1.03643 1.22317 0.96889 0.94774 0.91541 0.93407 1.21900 0.96779 0.91995 0.95732 1.60509 1.64199 1.04114 1.03411 1.22149 0.96540 0.85346 1.01952 1.19074 0.97391 0.93896 0.90891 1.21172 1.35677 0.94150 1.05120 0.92767 1.25000 0.95173 0.98752 0.95402 1.69974 1.39150 1.35292 1.08813 0.86585 0.78920 0.85209 0.77220 1.20600 1.21226 1.19943 0.95532 0.91517 0.90700 0.89862 0.94134 0.92429 0.88803 0.86709 0.92459 0.90443 0.95363 0.84707 0.96674 0.92216 0.95555 0.96820 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.01 60.07 0.54 0.76 16 2 N -0.54 -6.36 4.80 -234.57 -1.12 -7.49 16 3 C 0.02 0.19 5.64 -3.71 -0.02 0.17 16 4 C 0.06 0.65 7.01 37.21 0.26 0.91 16 5 O -0.39 -5.37 10.83 -35.23 -0.38 -5.75 16 6 C 0.08 1.08 6.13 37.21 0.23 1.30 16 7 C 0.05 0.72 2.24 -67.60 -0.15 0.56 16 8 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 9 C 0.07 0.97 4.89 -3.83 -0.02 0.95 16 10 N -0.69 -12.07 5.94 -113.79 -0.68 -12.75 16 11 C 0.07 1.42 5.62 -3.83 -0.02 1.40 16 12 C 0.02 0.65 5.23 -27.88 -0.15 0.50 16 13 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 14 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 17 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 21 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 22 H 0.07 0.56 8.04 -51.93 -0.42 0.15 16 23 H 0.07 0.78 6.56 -51.93 -0.34 0.44 16 24 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 25 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.11 1.72 7.81 -51.93 -0.41 1.31 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.18 8.13 -51.93 -0.42 0.76 16 31 H 0.03 0.40 6.32 -51.93 -0.33 0.07 16 32 H 0.34 5.72 8.79 -39.29 -0.35 5.37 16 33 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 297.22 15.07 4.48 4.48 Total: -1.00 -30.36 297.22 -8.17 -38.54 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -6.45 Total: -0.43 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 0.26 Total: -7.03 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -1.06 Total: -46.50 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.38 Total: -5.75 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.36 -8.17 -38.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704022414.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.440 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds