Wall clock time and date at job start Mon Mar 30 2020 02:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47010 * 111.00219 * 2 1 4 4 C 1.53097 * 109.25920 * 182.39186 * 3 2 1 5 5 O 1.43020 * 109.25666 * 303.15166 * 4 3 2 6 6 C 1.43009 * 113.74107 * 58.66820 * 5 4 3 7 7 C 1.47014 * 110.99446 * 123.63443 * 2 1 3 8 8 H 1.09003 * 109.50937 * 297.57900 * 7 2 1 9 9 C 1.52995 * 109.51039 * 57.67130 * 7 2 1 10 10 N 1.46900 * 109.47230 * 183.48313 * 9 7 2 11 11 C 1.46897 * 111.00205 * 185.19157 * 10 9 7 12 12 C 1.52998 * 109.47225 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47139 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00099 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00004 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99977 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99834 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47248 * 90.00508 * 17 15 13 19 19 H 1.48503 * 109.46982 * 209.99813 * 17 15 13 20 20 H 1.48496 * 109.47219 * 329.99865 * 17 15 13 21 21 H 1.08998 * 109.47147 * 290.05139 * 1 2 3 22 22 H 1.09005 * 109.46701 * 50.04791 * 1 2 3 23 23 H 1.08998 * 109.47430 * 170.04849 * 1 2 3 24 24 H 1.09005 * 109.50627 * 302.32589 * 3 2 1 25 25 H 1.08997 * 109.50883 * 62.45094 * 3 2 1 26 26 H 1.08997 * 109.50528 * 63.08122 * 4 3 2 27 27 H 1.08991 * 109.50888 * 183.16987 * 4 3 2 28 28 H 1.09003 * 109.50766 * 181.40083 * 6 5 4 29 29 H 1.09002 * 109.50699 * 61.26631 * 6 5 4 30 30 H 1.08995 * 109.47263 * 63.48714 * 9 7 2 31 31 H 1.09001 * 109.47227 * 303.48376 * 9 7 2 32 32 H 1.00904 * 110.99854 * 61.23827 * 10 9 7 33 33 H 1.08992 * 109.47407 * 300.00105 * 11 10 9 34 34 H 1.09003 * 109.46864 * 60.00155 * 11 10 9 35 35 H 1.09000 * 109.47558 * 300.00379 * 12 11 10 36 36 H 1.09003 * 109.46837 * 60.00428 * 12 11 10 37 37 H 0.97001 * 120.00086 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 3.5250 1.3263 -0.0603 5 8 4.0175 0.5573 1.0404 6 6 3.5250 -0.7850 1.0711 7 6 1.9958 -0.7602 1.1428 8 1 1.6821 -0.2846 2.0721 9 6 1.4588 -2.1921 1.0950 10 7 1.9180 -2.9270 2.2812 11 6 1.5247 -4.3406 2.2096 12 6 2.0199 -5.0716 3.4591 13 6 1.6170 -6.5220 3.3853 14 1 1.0628 -6.8858 2.5327 15 6 1.9550 -7.3842 4.4068 16 7 2.6286 -6.9408 5.4457 17 14 1.4549 -9.1817 4.3156 18 1 2.5242 -9.9593 3.6396 19 1 1.2522 -9.7093 5.6889 20 1 0.1909 -9.3054 3.5461 21 1 -0.3633 0.3523 0.9653 22 1 -0.3633 0.6600 -0.7878 23 1 -0.3634 -1.0122 -0.1776 24 1 1.6135 1.9092 -0.8682 25 1 1.6828 1.8826 0.9109 26 1 3.8386 0.8642 -0.9964 27 1 3.9222 2.3397 -0.0038 28 1 3.9221 -1.2985 1.9467 29 1 3.8385 -1.3085 0.1679 30 1 1.8253 -2.6878 0.1962 31 1 0.3691 -2.1712 1.0798 32 1 1.5742 -2.4985 3.1276 33 1 0.4387 -4.4131 2.1522 34 1 1.9666 -4.7962 1.3235 35 1 3.1060 -4.9991 3.5161 36 1 1.5783 -4.6161 4.3455 37 1 2.8661 -7.5473 6.1645 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704022414.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:50 Heat of formation + Delta-G solvation = -69.072671 kcal Electronic energy + Delta-G solvation = -16076.450107 eV Core-core repulsion = 13466.459773 eV Total energy + Delta-G solvation = -2609.990333 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.77560 -37.77378 -36.60675 -35.07107 -32.95946 -30.83000 -29.58449 -27.22582 -25.47378 -25.08575 -23.03885 -22.52409 -21.03932 -18.51491 -17.56937 -17.34661 -16.68350 -16.50537 -16.36724 -15.87547 -15.70590 -14.97285 -14.74145 -14.60129 -14.17605 -13.89762 -13.41227 -13.24779 -13.03285 -12.82287 -12.78033 -12.44980 -12.13789 -12.07559 -11.92052 -11.51799 -11.38042 -11.22908 -10.64135 -10.55324 -9.47432 -9.29035 -8.19920 -6.31445 1.41219 1.42802 1.53644 2.40585 2.64890 2.92327 3.13809 3.44835 3.75406 3.94376 4.01330 4.10303 4.25817 4.31512 4.49827 4.52834 4.55599 4.60640 4.66741 4.70406 4.77525 4.84307 4.95236 4.98501 5.06536 5.10967 5.44269 5.66993 5.75807 5.88028 5.94727 6.12050 6.19731 6.24905 6.47997 6.85934 7.37998 8.92273 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.054110 B = 0.004426 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.343962 B = 6324.096430 C = 6660.489995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.546 5.546 3 C 0.020 3.980 4 C 0.055 3.945 5 O -0.407 6.407 6 C 0.081 3.919 7 C 0.063 3.937 8 H 0.039 0.961 9 C 0.074 3.926 10 N -0.694 5.694 11 C 0.087 3.913 12 C 0.031 3.969 13 C -0.545 4.545 14 H 0.061 0.939 15 C 0.001 3.999 16 N -0.932 5.932 17 Si 0.967 3.033 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.263 1.263 21 H 0.024 0.976 22 H 0.088 0.912 23 H 0.070 0.930 24 H 0.110 0.890 25 H 0.037 0.963 26 H 0.061 0.939 27 H 0.119 0.881 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.339 0.661 33 H 0.020 0.980 34 H 0.060 0.940 35 H -0.004 1.004 36 H -0.009 1.009 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.246 16.380 -12.216 20.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.108 4.108 4 C -0.022 4.022 5 O -0.326 6.326 6 C 0.004 3.996 7 C -0.046 4.046 8 H 0.057 0.943 9 C -0.056 4.056 10 N -0.326 5.326 11 C -0.041 4.041 12 C -0.007 4.007 13 C -0.584 4.584 14 H 0.079 0.921 15 C -0.197 4.197 16 N -0.572 5.572 17 Si 0.791 3.209 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.187 1.187 21 H 0.043 0.957 22 H 0.106 0.894 23 H 0.089 0.911 24 H 0.128 0.872 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.136 0.864 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.156 0.844 33 H 0.038 0.962 34 H 0.078 0.922 35 H 0.014 0.986 36 H 0.010 0.990 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.266 16.069 -12.621 20.558 hybrid contribution -1.504 -0.642 1.145 1.996 sum -3.770 15.427 -11.476 19.593 Atomic orbital electron populations 1.22485 0.86082 1.03167 1.00930 1.62201 1.09161 1.14089 1.41751 1.22875 0.96462 0.89011 1.02439 1.22894 0.92480 0.97206 0.89578 1.87974 1.70473 1.24604 1.49576 1.22563 0.91572 0.82816 1.02683 1.22105 0.96406 0.94047 0.92037 0.94260 1.21859 0.97324 0.92400 0.94007 1.60386 1.64604 1.02781 1.04783 1.21752 0.96426 0.86859 0.99108 1.18929 0.95278 0.93944 0.92508 1.21619 1.35823 0.95445 1.05475 0.92099 1.25971 0.94953 1.03890 0.94879 1.70110 1.40245 1.37189 1.09657 0.85421 0.79023 0.78937 0.77492 1.19761 1.20745 1.18678 0.95686 0.89353 0.91126 0.87209 0.94456 0.92078 0.86359 0.88495 0.92703 0.90733 0.94354 0.84407 0.96203 0.92194 0.98595 0.99015 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.01 127.69 1.15 1.53 16 2 N -0.55 -11.82 4.80 -896.04 -4.30 -16.11 16 3 C 0.02 0.35 5.64 86.31 0.49 0.84 16 4 C 0.05 1.04 7.01 72.01 0.50 1.54 16 5 O -0.41 -10.96 10.83 -148.98 -1.61 -12.57 16 6 C 0.08 2.24 6.13 72.02 0.44 2.68 16 7 C 0.06 1.64 2.24 44.93 0.10 1.74 16 8 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 9 C 0.07 2.09 4.89 86.30 0.42 2.51 16 10 N -0.69 -24.33 5.94 -513.92 -3.05 -27.38 16 11 C 0.09 3.66 5.62 86.30 0.48 4.14 16 12 C 0.03 1.65 5.23 29.85 0.16 1.81 16 13 C -0.55 -31.25 9.11 25.60 0.23 -31.01 16 14 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 15 C 0.00 0.06 5.46 84.65 0.46 0.52 16 16 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 17 Si 0.97 44.36 29.54 68.60 2.03 46.39 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 21 H 0.02 0.46 8.12 -2.39 -0.02 0.44 16 22 H 0.09 1.22 8.04 -2.38 -0.02 1.20 16 23 H 0.07 1.33 6.56 -2.39 -0.02 1.32 16 24 H 0.11 1.38 8.09 -2.38 -0.02 1.36 16 25 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.10 2.98 7.81 -2.39 -0.02 2.97 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.07 2.19 8.13 -2.39 -0.02 2.17 16 31 H 0.04 1.03 6.32 -2.39 -0.02 1.02 16 32 H 0.34 11.64 8.79 -89.69 -0.79 10.85 16 33 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 36 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 37 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -64.94 297.22 -1.97 -66.91 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.24 Total: 13.43 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 4.44 Total: -13.70 kcal Atomic # 7 Polarization: -93.39 SS G_CDS: -7.06 Total: -100.46 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -1.61 Total: -12.57 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -64.94 -1.97 -66.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704022414.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.161 kcal (2) G-P(sol) polarization free energy of solvation -64.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds