Wall clock time and date at job start Mon Mar 30 2020 02:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47010 * 111.00195 * 2 1 4 4 C 1.53093 * 109.26087 * 177.60606 * 3 2 1 5 5 O 1.43025 * 109.25722 * 56.84768 * 4 3 2 6 6 C 1.43016 * 113.73481 * 301.32985 * 5 4 3 7 7 C 1.47014 * 110.99940 * 236.36420 * 2 1 3 8 8 H 1.08989 * 109.50703 * 62.41533 * 7 2 1 9 9 C 1.53000 * 109.50534 * 302.32769 * 7 2 1 10 10 N 1.46904 * 109.47127 * 176.14842 * 9 7 2 11 11 C 1.46904 * 110.99857 * 174.86330 * 10 9 7 12 12 C 1.52997 * 109.47001 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47306 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99802 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00178 * 180.27330 * 13 12 11 16 16 N 1.31520 * 119.99931 * 359.72455 * 15 13 12 17 17 Si 1.86797 * 119.99929 * 179.72119 * 15 13 12 18 18 H 1.48498 * 109.47538 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.46993 * 120.00275 * 17 15 13 20 20 H 1.48500 * 109.47114 * 239.99837 * 17 15 13 21 21 H 1.08991 * 109.47280 * 190.02633 * 1 2 3 22 22 H 1.09007 * 109.47195 * 310.02817 * 1 2 3 23 23 H 1.09006 * 109.47066 * 70.02164 * 1 2 3 24 24 H 1.09004 * 109.50534 * 297.54315 * 3 2 1 25 25 H 1.09003 * 109.51248 * 57.66993 * 3 2 1 26 26 H 1.09001 * 109.51148 * 176.78193 * 4 3 2 27 27 H 1.08999 * 109.51120 * 296.91562 * 4 3 2 28 28 H 1.09002 * 109.50892 * 298.73449 * 6 5 4 29 29 H 1.08997 * 109.50375 * 178.60778 * 6 5 4 30 30 H 1.09002 * 109.47159 * 56.14736 * 9 7 2 31 31 H 1.09005 * 109.46986 * 296.14980 * 9 7 2 32 32 H 1.00899 * 110.99806 * 298.81577 * 10 9 7 33 33 H 1.08999 * 109.47058 * 59.99787 * 11 10 9 34 34 H 1.09003 * 109.46848 * 299.99941 * 11 10 9 35 35 H 1.08999 * 109.47105 * 59.99571 * 12 11 10 36 36 H 1.09004 * 109.46696 * 299.99900 * 12 11 10 37 37 H 0.96994 * 120.00016 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 3.5249 1.3264 0.0604 5 8 4.0175 0.5573 -1.0403 6 6 3.5249 -0.7850 -1.0708 7 6 1.9958 -0.7602 -1.1427 8 1 1.6821 -0.2848 -2.0719 9 6 1.4589 -2.1921 -1.0949 10 7 1.9108 -2.9246 -2.2854 11 6 1.5165 -4.3380 -2.2150 12 6 2.0041 -5.0665 -3.4690 13 6 1.5991 -6.5162 -3.3972 14 1 1.0494 -6.8816 -2.5424 15 6 1.9358 -7.3776 -4.4198 16 7 2.6058 -6.9327 -5.4605 17 14 1.4406 -9.1763 -4.3270 18 1 0.7008 -9.4216 -3.0630 19 1 0.5706 -9.5104 -5.4833 20 1 2.6573 -10.0271 -4.3610 21 1 -0.3633 -1.0119 0.1789 22 1 -0.3634 0.6610 0.7870 23 1 -0.3633 0.3511 -0.9659 24 1 1.6827 1.8825 -0.9110 25 1 1.6134 1.9093 0.8682 26 1 3.9222 2.3398 0.0030 27 1 3.8385 0.8643 0.9964 28 1 3.8385 -1.3085 -0.1676 29 1 3.9222 -1.2986 -1.9463 30 1 0.3693 -2.1711 -1.0731 31 1 1.8306 -2.6898 -0.1991 32 1 1.5628 -2.4937 -3.1288 33 1 0.4307 -4.4096 -2.1518 34 1 1.9629 -4.7962 -1.3324 35 1 3.0899 -4.9948 -3.5317 36 1 1.5581 -4.6083 -4.3518 37 1 2.8430 -7.5387 -6.1797 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704022415.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:52 Heat of formation + Delta-G solvation = -46.004644 kcal Electronic energy + Delta-G solvation = -16075.032721 eV Core-core repulsion = 13466.042692 eV Total energy + Delta-G solvation = -2608.990029 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.78935 -36.46521 -35.40305 -33.12757 -31.55251 -29.38149 -28.43332 -25.77630 -24.19600 -23.75621 -21.93940 -20.74465 -19.91889 -16.53903 -16.40876 -16.28076 -15.46858 -15.24494 -14.97258 -14.58315 -14.40629 -13.86994 -13.32295 -13.04554 -12.91925 -12.49824 -12.15791 -11.99277 -11.87261 -11.20251 -11.10652 -10.95945 -10.91709 -10.59604 -10.48211 -10.02185 -9.62986 -9.38607 -9.13935 -8.54281 -8.35698 -7.85767 -5.99964 -4.02597 3.31319 3.38713 3.42646 3.59677 3.88160 4.44163 4.68636 4.74030 4.86695 5.03217 5.06961 5.17609 5.32654 5.33430 5.36228 5.39461 5.51313 5.65649 5.68532 5.80950 5.88744 6.01136 6.18817 6.32433 6.38913 6.78376 6.84292 6.95929 7.16443 7.43303 7.71145 7.80136 7.92284 8.07093 8.42930 9.04889 9.61380 11.11527 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.054115 B = 0.004425 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.287929 B = 6325.917928 C = 6661.036729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.539 5.539 3 C 0.019 3.981 4 C 0.062 3.938 5 O -0.388 6.388 6 C 0.077 3.923 7 C 0.054 3.946 8 H 0.048 0.952 9 C 0.066 3.934 10 N -0.691 5.691 11 C 0.068 3.932 12 C 0.025 3.975 13 C -0.521 4.521 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 H 0.074 0.926 22 H 0.066 0.934 23 H 0.026 0.974 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.115 0.885 30 H 0.028 0.972 31 H 0.077 0.923 32 H 0.336 0.664 33 H 0.015 0.985 34 H 0.059 0.941 35 H 0.026 0.974 36 H 0.013 0.987 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.197 16.034 10.828 19.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.264 5.264 3 C -0.109 4.109 4 C -0.015 4.015 5 O -0.307 6.307 6 C 0.000 4.000 7 C -0.055 4.055 8 H 0.066 0.934 9 C -0.064 4.064 10 N -0.322 5.322 11 C -0.060 4.060 12 C -0.013 4.013 13 C -0.560 4.560 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.532 5.532 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 H 0.093 0.907 22 H 0.085 0.915 23 H 0.045 0.955 24 H 0.059 0.941 25 H 0.101 0.899 26 H 0.112 0.888 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.133 0.867 30 H 0.046 0.954 31 H 0.096 0.904 32 H 0.153 0.847 33 H 0.033 0.967 34 H 0.078 0.922 35 H 0.045 0.955 36 H 0.032 0.968 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.205 15.696 11.215 19.328 hybrid contribution -1.834 -0.636 -0.727 2.073 sum -3.039 15.060 10.487 18.602 Atomic orbital electron populations 1.22432 0.87176 1.02831 1.00198 1.62184 1.08121 1.13124 1.43015 1.22791 0.96833 0.89899 1.01399 1.22625 0.91979 0.96441 0.90493 1.88008 1.69928 1.24729 1.48005 1.22718 0.91158 0.82445 1.03634 1.22314 0.96880 0.94778 0.91545 0.93398 1.21904 0.96835 0.92009 0.95665 1.60512 1.64234 1.04121 1.03368 1.22151 0.96528 0.85352 1.01953 1.19079 0.97418 0.93942 0.90852 1.21210 1.35713 0.94168 1.04947 0.92709 1.25003 0.95159 0.98763 0.95433 1.69983 1.39301 1.35220 1.08721 0.86532 0.78286 0.85206 0.77942 1.19774 1.21041 1.20951 0.90698 0.91517 0.95530 0.94133 0.89860 0.88804 0.92422 0.92459 0.86719 0.95351 0.90445 0.84709 0.96672 0.92216 0.95542 0.96824 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.01 60.06 0.54 0.76 16 2 N -0.54 -6.36 4.79 -234.58 -1.12 -7.48 16 3 C 0.02 0.19 5.64 -3.72 -0.02 0.17 16 4 C 0.06 0.65 7.01 37.21 0.26 0.91 16 5 O -0.39 -5.36 10.83 -35.23 -0.38 -5.75 16 6 C 0.08 1.07 6.13 37.21 0.23 1.30 16 7 C 0.05 0.72 2.23 -67.60 -0.15 0.56 16 8 H 0.05 0.68 8.14 -51.94 -0.42 0.25 16 9 C 0.07 0.97 4.90 -3.82 -0.02 0.95 16 10 N -0.69 -12.07 5.95 -113.77 -0.68 -12.75 16 11 C 0.07 1.43 5.62 -3.82 -0.02 1.40 16 12 C 0.02 0.64 5.23 -27.89 -0.15 0.49 16 13 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 14 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 17 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H 0.07 0.78 6.56 -51.93 -0.34 0.44 16 22 H 0.07 0.56 8.04 -51.92 -0.42 0.15 16 23 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 24 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.11 1.71 7.82 -51.93 -0.41 1.31 16 30 H 0.03 0.40 6.31 -51.93 -0.33 0.08 16 31 H 0.08 1.18 8.13 -51.93 -0.42 0.75 16 32 H 0.34 5.72 8.79 -39.29 -0.35 5.37 16 33 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 297.23 15.07 4.48 4.48 Total: -1.00 -30.39 297.23 -8.17 -38.56 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.45 Total: -0.46 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 0.26 Total: -7.03 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -1.07 Total: -46.49 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.38 Total: -5.75 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.39 -8.17 -38.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704022415.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.445 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds