Wall clock time and date at job start Mon Mar 30 2020 02:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47010 * 111.00195 * 2 1 4 4 C 1.53093 * 109.26087 * 177.60606 * 3 2 1 5 5 O 1.43025 * 109.25722 * 56.84768 * 4 3 2 6 6 C 1.43016 * 113.73481 * 301.32985 * 5 4 3 7 7 C 1.47014 * 110.99940 * 236.36420 * 2 1 3 8 8 H 1.08989 * 109.50703 * 62.41533 * 7 2 1 9 9 C 1.53000 * 109.50534 * 302.32769 * 7 2 1 10 10 N 1.46904 * 109.47127 * 176.14842 * 9 7 2 11 11 C 1.46904 * 110.99857 * 174.86330 * 10 9 7 12 12 C 1.52997 * 109.47001 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47306 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99802 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00178 * 180.27330 * 13 12 11 16 16 N 1.31520 * 119.99931 * 359.72455 * 15 13 12 17 17 Si 1.86797 * 119.99929 * 179.72119 * 15 13 12 18 18 H 1.48498 * 109.47538 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.46993 * 120.00275 * 17 15 13 20 20 H 1.48500 * 109.47114 * 239.99837 * 17 15 13 21 21 H 1.08991 * 109.47280 * 190.02633 * 1 2 3 22 22 H 1.09007 * 109.47195 * 310.02817 * 1 2 3 23 23 H 1.09006 * 109.47066 * 70.02164 * 1 2 3 24 24 H 1.09004 * 109.50534 * 297.54315 * 3 2 1 25 25 H 1.09003 * 109.51248 * 57.66993 * 3 2 1 26 26 H 1.09001 * 109.51148 * 176.78193 * 4 3 2 27 27 H 1.08999 * 109.51120 * 296.91562 * 4 3 2 28 28 H 1.09002 * 109.50892 * 298.73449 * 6 5 4 29 29 H 1.08997 * 109.50375 * 178.60778 * 6 5 4 30 30 H 1.09002 * 109.47159 * 56.14736 * 9 7 2 31 31 H 1.09005 * 109.46986 * 296.14980 * 9 7 2 32 32 H 1.00899 * 110.99806 * 298.81577 * 10 9 7 33 33 H 1.08999 * 109.47058 * 59.99787 * 11 10 9 34 34 H 1.09003 * 109.46848 * 299.99941 * 11 10 9 35 35 H 1.08999 * 109.47105 * 59.99571 * 12 11 10 36 36 H 1.09004 * 109.46696 * 299.99900 * 12 11 10 37 37 H 0.96994 * 120.00016 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 3.5249 1.3264 0.0604 5 8 4.0175 0.5573 -1.0403 6 6 3.5249 -0.7850 -1.0708 7 6 1.9958 -0.7602 -1.1427 8 1 1.6821 -0.2848 -2.0719 9 6 1.4589 -2.1921 -1.0949 10 7 1.9108 -2.9246 -2.2854 11 6 1.5165 -4.3380 -2.2150 12 6 2.0041 -5.0665 -3.4690 13 6 1.5991 -6.5162 -3.3972 14 1 1.0494 -6.8816 -2.5424 15 6 1.9358 -7.3776 -4.4198 16 7 2.6058 -6.9327 -5.4605 17 14 1.4406 -9.1763 -4.3270 18 1 0.7008 -9.4216 -3.0630 19 1 0.5706 -9.5104 -5.4833 20 1 2.6573 -10.0271 -4.3610 21 1 -0.3633 -1.0119 0.1789 22 1 -0.3634 0.6610 0.7870 23 1 -0.3633 0.3511 -0.9659 24 1 1.6827 1.8825 -0.9110 25 1 1.6134 1.9093 0.8682 26 1 3.9222 2.3398 0.0030 27 1 3.8385 0.8643 0.9964 28 1 3.8385 -1.3085 -0.1676 29 1 3.9222 -1.2986 -1.9463 30 1 0.3693 -2.1711 -1.0731 31 1 1.8306 -2.6898 -0.1991 32 1 1.5628 -2.4937 -3.1288 33 1 0.4307 -4.4096 -2.1518 34 1 1.9629 -4.7962 -1.3324 35 1 3.0899 -4.9948 -3.5317 36 1 1.5581 -4.6083 -4.3518 37 1 2.8430 -7.5387 -6.1797 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704022415.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:52 Heat of formation + Delta-G solvation = -69.127410 kcal Electronic energy + Delta-G solvation = -16076.035399 eV Core-core repulsion = 13466.042692 eV Total energy + Delta-G solvation = -2609.992707 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.77590 -37.77343 -36.60652 -35.07191 -32.96012 -30.83082 -29.58628 -27.22626 -25.47360 -25.08665 -23.03851 -22.52551 -21.03985 -18.51889 -17.56961 -17.34682 -16.68390 -16.50416 -16.36621 -15.87522 -15.70563 -14.97545 -14.74242 -14.59967 -14.17689 -13.90350 -13.41309 -13.24294 -13.03237 -12.84171 -12.78392 -12.43184 -12.13849 -12.07692 -11.92365 -11.52011 -11.37534 -11.21820 -10.64220 -10.55991 -9.47452 -9.29004 -8.20165 -6.31579 1.40978 1.41640 1.54820 2.40466 2.64863 2.92331 3.13646 3.44935 3.75333 3.94326 4.01303 4.10291 4.25792 4.31508 4.49873 4.52777 4.55574 4.60627 4.66743 4.70349 4.77482 4.84266 4.95189 4.98556 5.06496 5.10896 5.44408 5.66930 5.75872 5.88008 5.94715 6.12023 6.19641 6.24893 6.48033 6.86028 7.37931 8.92260 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.054115 B = 0.004425 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.287929 B = 6325.917928 C = 6661.036729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.546 5.546 3 C 0.020 3.980 4 C 0.055 3.945 5 O -0.407 6.407 6 C 0.081 3.919 7 C 0.063 3.937 8 H 0.039 0.961 9 C 0.074 3.926 10 N -0.694 5.694 11 C 0.087 3.913 12 C 0.031 3.969 13 C -0.544 4.544 14 H 0.061 0.939 15 C 0.001 3.999 16 N -0.932 5.932 17 Si 0.967 3.033 18 H -0.261 1.261 19 H -0.278 1.278 20 H -0.278 1.278 21 H 0.070 0.930 22 H 0.088 0.912 23 H 0.024 0.976 24 H 0.037 0.963 25 H 0.110 0.890 26 H 0.118 0.882 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.339 0.661 33 H 0.020 0.980 34 H 0.059 0.941 35 H -0.004 1.004 36 H -0.009 1.009 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.184 16.369 12.268 20.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.108 4.108 4 C -0.022 4.022 5 O -0.326 6.326 6 C 0.004 3.996 7 C -0.046 4.046 8 H 0.057 0.943 9 C -0.056 4.056 10 N -0.326 5.326 11 C -0.041 4.041 12 C -0.007 4.007 13 C -0.582 4.582 14 H 0.079 0.921 15 C -0.197 4.197 16 N -0.572 5.572 17 Si 0.791 3.209 18 H -0.185 1.185 19 H -0.203 1.203 20 H -0.204 1.204 21 H 0.089 0.911 22 H 0.106 0.894 23 H 0.043 0.957 24 H 0.055 0.945 25 H 0.128 0.872 26 H 0.136 0.864 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.115 0.885 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.156 0.844 33 H 0.038 0.962 34 H 0.078 0.922 35 H 0.014 0.986 36 H 0.010 0.990 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.201 16.057 12.675 20.575 hybrid contribution -1.504 -0.640 -1.153 2.000 sum -3.704 15.417 11.521 19.600 Atomic orbital electron populations 1.22485 0.86084 1.03169 1.00927 1.62197 1.09159 1.14088 1.41758 1.22875 0.96463 0.89011 1.02438 1.22899 0.92480 0.97199 0.89581 1.87977 1.70473 1.24598 1.49581 1.22563 0.91571 0.82826 1.02683 1.22102 0.96404 0.94048 0.92037 0.94260 1.21864 0.97386 0.92419 0.93930 1.60389 1.64630 1.02786 1.04752 1.21755 0.96436 0.86869 0.99086 1.18932 0.95289 0.93972 0.92497 1.21646 1.35859 0.95462 1.05280 0.92103 1.25972 0.94938 1.03897 0.94914 1.70116 1.40383 1.37146 1.09573 0.85370 0.78115 0.78905 0.78460 1.18525 1.20343 1.20388 0.91124 0.89352 0.95691 0.94460 0.87207 0.86362 0.92065 0.92689 0.88503 0.94343 0.90736 0.84408 0.96189 0.92207 0.98578 0.99013 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.01 127.69 1.15 1.53 16 2 N -0.55 -11.81 4.79 -896.08 -4.30 -16.11 16 3 C 0.02 0.35 5.64 86.31 0.49 0.84 16 4 C 0.05 1.04 7.01 72.01 0.50 1.54 16 5 O -0.41 -10.95 10.83 -148.98 -1.61 -12.57 16 6 C 0.08 2.23 6.13 72.01 0.44 2.67 16 7 C 0.06 1.64 2.23 44.93 0.10 1.74 16 8 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 9 C 0.07 2.09 4.90 86.30 0.42 2.51 16 10 N -0.69 -24.33 5.95 -513.86 -3.06 -27.39 16 11 C 0.09 3.66 5.62 86.30 0.48 4.14 16 12 C 0.03 1.64 5.23 29.85 0.16 1.79 16 13 C -0.54 -31.18 9.11 25.60 0.23 -30.95 16 14 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 15 C 0.00 0.04 5.46 84.65 0.46 0.50 16 16 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 17 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 18 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 21 H 0.07 1.33 6.56 -2.39 -0.02 1.32 16 22 H 0.09 1.22 8.04 -2.38 -0.02 1.20 16 23 H 0.02 0.46 8.12 -2.38 -0.02 0.44 16 24 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 25 H 0.11 1.38 8.09 -2.39 -0.02 1.36 16 26 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.10 2.98 7.82 -2.39 -0.02 2.96 16 30 H 0.04 1.04 6.31 -2.39 -0.02 1.02 16 31 H 0.07 2.19 8.13 -2.38 -0.02 2.17 16 32 H 0.34 11.64 8.79 -89.69 -0.79 10.85 16 33 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 36 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 37 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -64.97 297.23 -1.98 -66.95 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.24 Total: 13.32 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: 4.44 Total: -13.67 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -7.07 Total: -100.44 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -1.61 Total: -12.57 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -64.97 -1.98 -66.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704022415.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.179 kcal (2) G-P(sol) polarization free energy of solvation -64.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds