Wall clock time and date at job start Mon Mar 30 2020 03:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 113.99883 * 2 1 4 4 C 1.52998 * 109.47098 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47547 * 187.29818 * 4 3 2 6 6 C 1.53003 * 109.47466 * 307.30123 * 4 3 2 7 7 N 1.46896 * 109.47217 * 174.74484 * 6 4 3 8 8 N 1.46897 * 109.46868 * 67.29950 * 4 3 2 9 9 C 1.46906 * 111.00374 * 303.54536 * 8 4 3 10 10 C 1.50695 * 109.47442 * 190.95967 * 9 8 4 11 11 H 1.08004 * 119.99926 * 5.09119 * 10 9 8 12 12 C 1.37874 * 119.99985 * 185.08248 * 10 9 8 13 13 N 1.31513 * 120.00206 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00073 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47180 * 90.00225 * 14 12 10 16 16 H 1.48499 * 109.47208 * 210.00366 * 14 12 10 17 17 H 1.48501 * 109.46889 * 330.00345 * 14 12 10 18 18 C 1.46905 * 111.00070 * 67.49891 * 8 4 3 19 19 C 1.52998 * 117.49707 * 130.75930 * 18 8 4 20 20 C 1.52998 * 117.49605 * 62.10203 * 18 8 4 21 21 H 1.08996 * 109.46978 * 59.99929 * 1 2 3 22 22 H 1.08999 * 109.47086 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46881 * 299.99852 * 1 2 3 24 24 H 1.09004 * 109.46890 * 60.00135 * 3 2 1 25 25 H 1.08994 * 109.47723 * 300.00399 * 3 2 1 26 26 H 1.09000 * 109.46620 * 294.75120 * 6 4 3 27 27 H 1.09004 * 109.47085 * 54.74514 * 6 4 3 28 28 H 1.00901 * 110.99810 * 56.04850 * 7 6 4 29 29 H 1.00898 * 110.99878 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.46542 * 310.96499 * 9 8 4 31 31 H 1.08997 * 109.46759 * 70.96081 * 9 8 4 32 32 H 0.96995 * 120.00415 * 179.97438 * 13 12 10 33 33 H 1.09000 * 115.54715 * 276.43018 * 18 8 4 34 34 H 1.08999 * 117.50536 * 0.02562 * 19 18 8 35 35 H 1.08999 * 117.49767 * 145.02428 * 19 18 8 36 36 H 1.09010 * 117.49385 * 214.98044 * 20 18 8 37 37 H 1.08996 * 117.50377 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9782 2.1721 0.1312 6 6 3.9745 0.2732 1.1484 7 7 5.4254 0.0559 1.0737 8 7 3.9819 0.6130 -1.2768 9 6 3.3385 -0.6839 -1.5267 10 6 4.0100 -1.3613 -2.6934 11 1 4.8836 -0.9162 -3.1464 12 6 3.5093 -2.5492 -3.1823 13 7 2.4453 -3.0909 -2.6309 14 14 4.3421 -3.3892 -4.6281 15 1 5.3830 -4.3219 -4.1262 16 1 3.3320 -4.1482 -5.4085 17 1 4.9733 -2.3653 -5.4989 18 6 3.7357 1.5450 -2.3853 19 6 4.8937 1.8209 -3.3465 20 6 4.4560 2.8943 -2.3469 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.6886 1.8463 0.8900 25 1 1.6886 1.8464 -0.8899 26 1 3.7258 0.7423 2.1004 27 1 3.4592 -0.6842 1.0696 28 1 5.9232 0.9335 1.0797 29 1 5.7403 -0.5432 1.8220 30 1 3.4300 -1.3115 -0.6403 31 1 2.2841 -0.5284 -1.7546 32 1 2.0928 -3.9264 -2.9750 33 1 2.7291 1.5234 -2.8029 34 1 5.8380 1.3106 -3.1567 35 1 4.6488 1.9813 -4.3965 36 1 3.9233 3.7605 -2.7396 37 1 5.1121 3.0907 -1.4989 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704122281.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:57 Heat of formation + Delta-G solvation = -1.726462 kcal Electronic energy + Delta-G solvation = -17272.552829 eV Core-core repulsion = 14665.482846 eV Total energy + Delta-G solvation = -2607.069983 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.75825 -36.58552 -34.74598 -32.86839 -31.67136 -29.01589 -26.38610 -25.45835 -24.11294 -22.18463 -21.64523 -20.71707 -18.49619 -16.78735 -15.78048 -15.41061 -15.30794 -15.09722 -14.70530 -14.20845 -13.70120 -13.55550 -12.76919 -12.71582 -12.15924 -11.82817 -11.61032 -11.35279 -11.07688 -10.87301 -10.79903 -10.64953 -10.38035 -10.11633 -9.82226 -9.53230 -9.18578 -9.14902 -8.72943 -8.14300 -7.92808 -6.87659 -5.74898 -3.72419 3.45897 3.51219 3.55435 4.32778 4.56309 4.61948 4.87770 5.12401 5.46398 5.56872 5.58708 5.62149 5.66968 5.75380 5.77420 5.82297 5.91969 5.99652 6.09296 6.14396 6.18116 6.36970 6.49737 6.68505 6.72618 6.92050 7.58102 7.70583 7.79166 7.88600 8.04454 8.10504 8.45848 8.55119 8.89762 9.37338 9.88336 11.35071 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.019805 B = 0.010850 C = 0.009193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.448095 B = 2580.129138 C = 3045.101291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.031 3.969 4 C 0.091 3.909 5 H 0.074 0.926 6 C 0.077 3.923 7 N -0.823 5.823 8 N -0.481 5.481 9 C 0.204 3.796 10 C -0.490 4.490 11 H 0.060 0.940 12 C 0.051 3.949 13 N -0.900 5.900 14 Si 0.888 3.112 15 H -0.283 1.283 16 H -0.291 1.291 17 H -0.276 1.276 18 C 0.039 3.961 19 C -0.153 4.153 20 C -0.198 4.198 21 H 0.033 0.967 22 H 0.084 0.916 23 H 0.027 0.973 24 H 0.034 0.966 25 H 0.045 0.955 26 H 0.009 0.991 27 H 0.089 0.911 28 H 0.329 0.671 29 H 0.330 0.670 30 H 0.036 0.964 31 H 0.014 0.986 32 H 0.254 0.746 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.532 10.347 6.217 12.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C -0.048 4.048 4 C -0.019 4.019 5 H 0.092 0.908 6 C -0.054 4.054 7 N -0.351 5.351 8 N -0.205 5.205 9 C 0.080 3.920 10 C -0.529 4.529 11 H 0.078 0.922 12 C -0.148 4.148 13 N -0.541 5.541 14 Si 0.717 3.283 15 H -0.210 1.210 16 H -0.218 1.218 17 H -0.201 1.201 18 C -0.070 4.070 19 C -0.191 4.191 20 C -0.236 4.236 21 H 0.052 0.948 22 H 0.103 0.897 23 H 0.046 0.954 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.027 0.973 27 H 0.107 0.893 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.054 0.946 31 H 0.031 0.969 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.115 0.885 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.184 9.583 5.517 11.059 hybrid contribution -0.786 0.303 0.022 0.843 sum -0.970 9.885 5.539 11.373 Atomic orbital electron populations 1.22636 0.82789 1.02515 0.98432 1.88324 1.18252 1.26010 1.94763 1.23301 0.96652 0.85905 0.98965 1.21805 0.89430 0.97543 0.93094 0.90766 1.21748 0.89210 1.00830 0.93628 1.58366 1.04137 1.19377 1.53212 1.62124 1.57729 1.03467 0.97149 1.19818 0.92562 0.83010 0.96603 1.21312 1.11954 1.05496 1.14187 0.92221 1.24919 0.95268 0.97501 0.97107 1.69992 1.23094 1.19262 1.41788 0.86665 0.79057 0.79601 0.83009 1.20989 1.21764 1.20134 1.22148 0.94634 0.93057 0.97150 1.22830 1.00603 1.01004 0.94629 1.23028 1.05243 0.92409 1.02877 0.94842 0.89733 0.95446 0.94776 0.93666 0.97257 0.89306 0.85903 0.85860 0.94573 0.96875 0.93588 0.91066 0.88452 0.90050 0.90206 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.36 -7.11 6.28 -35.23 -0.22 -7.33 16 3 C 0.03 0.54 5.26 37.16 0.20 0.74 16 4 C 0.09 1.64 2.48 -67.71 -0.17 1.47 16 5 H 0.07 1.19 7.03 -51.93 -0.37 0.82 16 6 C 0.08 1.34 5.78 -3.82 -0.02 1.32 16 7 N -0.82 -13.68 9.34 -10.37 -0.10 -13.78 16 8 N -0.48 -10.37 4.31 -220.15 -0.95 -11.32 16 9 C 0.20 5.40 3.12 -4.98 -0.02 5.38 16 10 C -0.49 -14.26 8.71 -34.44 -0.30 -14.56 16 11 H 0.06 1.74 7.13 -52.48 -0.37 1.37 16 12 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 13 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 14 Si 0.89 22.66 29.54 -169.99 -5.02 17.64 16 15 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 16 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 C 0.04 0.79 3.58 -67.71 -0.24 0.54 16 19 C -0.15 -2.83 9.80 -26.70 -0.26 -3.09 16 20 C -0.20 -3.16 9.73 -26.70 -0.26 -3.42 16 21 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 23 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.79 6.99 -51.93 -0.36 0.43 16 26 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.09 1.85 5.74 -51.93 -0.30 1.55 16 28 H 0.33 4.78 8.99 -39.29 -0.35 4.43 16 29 H 0.33 4.77 9.08 -39.29 -0.36 4.41 16 30 H 0.04 1.05 5.88 -51.93 -0.31 0.75 16 31 H 0.01 0.39 6.08 -51.93 -0.32 0.07 16 32 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.07 1.52 7.71 -51.93 -0.40 1.12 16 34 H 0.10 1.93 8.14 -51.93 -0.42 1.50 16 35 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.08 1.11 8.14 -51.92 -0.42 0.69 16 37 H 0.09 1.36 7.64 -51.93 -0.40 0.96 16 LS Contribution 294.71 15.07 4.44 4.44 Total: -1.00 -31.84 294.71 -7.21 -39.06 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.05 Total: 6.71 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -0.06 Total: -8.54 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -0.31 Total: -51.98 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.22 Total: -7.33 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.84 -7.21 -39.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704122281.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.331 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds