Wall clock time and date at job start Mon Mar 30 2020 03:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 113.99883 * 2 1 4 4 C 1.52998 * 109.47098 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47547 * 187.29818 * 4 3 2 6 6 C 1.53003 * 109.47466 * 307.30123 * 4 3 2 7 7 N 1.46896 * 109.47217 * 174.74484 * 6 4 3 8 8 N 1.46897 * 109.46868 * 67.29950 * 4 3 2 9 9 C 1.46906 * 111.00374 * 303.54536 * 8 4 3 10 10 C 1.50695 * 109.47442 * 190.95967 * 9 8 4 11 11 H 1.08004 * 119.99926 * 5.09119 * 10 9 8 12 12 C 1.37874 * 119.99985 * 185.08248 * 10 9 8 13 13 N 1.31513 * 120.00206 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00073 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47180 * 90.00225 * 14 12 10 16 16 H 1.48499 * 109.47208 * 210.00366 * 14 12 10 17 17 H 1.48501 * 109.46889 * 330.00345 * 14 12 10 18 18 C 1.46905 * 111.00070 * 67.49891 * 8 4 3 19 19 C 1.52998 * 117.49707 * 130.75930 * 18 8 4 20 20 C 1.52998 * 117.49605 * 62.10203 * 18 8 4 21 21 H 1.08996 * 109.46978 * 59.99929 * 1 2 3 22 22 H 1.08999 * 109.47086 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46881 * 299.99852 * 1 2 3 24 24 H 1.09004 * 109.46890 * 60.00135 * 3 2 1 25 25 H 1.08994 * 109.47723 * 300.00399 * 3 2 1 26 26 H 1.09000 * 109.46620 * 294.75120 * 6 4 3 27 27 H 1.09004 * 109.47085 * 54.74514 * 6 4 3 28 28 H 1.00901 * 110.99810 * 56.04850 * 7 6 4 29 29 H 1.00898 * 110.99878 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.46542 * 310.96499 * 9 8 4 31 31 H 1.08997 * 109.46759 * 70.96081 * 9 8 4 32 32 H 0.96995 * 120.00415 * 179.97438 * 13 12 10 33 33 H 1.09000 * 115.54715 * 276.43018 * 18 8 4 34 34 H 1.08999 * 117.50536 * 0.02562 * 19 18 8 35 35 H 1.08999 * 117.49767 * 145.02428 * 19 18 8 36 36 H 1.09010 * 117.49385 * 214.98044 * 20 18 8 37 37 H 1.08996 * 117.50377 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9782 2.1721 0.1312 6 6 3.9745 0.2732 1.1484 7 7 5.4254 0.0559 1.0737 8 7 3.9819 0.6130 -1.2768 9 6 3.3385 -0.6839 -1.5267 10 6 4.0100 -1.3613 -2.6934 11 1 4.8836 -0.9162 -3.1464 12 6 3.5093 -2.5492 -3.1823 13 7 2.4453 -3.0909 -2.6309 14 14 4.3421 -3.3892 -4.6281 15 1 5.3830 -4.3219 -4.1262 16 1 3.3320 -4.1482 -5.4085 17 1 4.9733 -2.3653 -5.4989 18 6 3.7357 1.5450 -2.3853 19 6 4.8937 1.8209 -3.3465 20 6 4.4560 2.8943 -2.3469 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.6886 1.8463 0.8900 25 1 1.6886 1.8464 -0.8899 26 1 3.7258 0.7423 2.1004 27 1 3.4592 -0.6842 1.0696 28 1 5.9232 0.9335 1.0797 29 1 5.7403 -0.5432 1.8220 30 1 3.4300 -1.3115 -0.6403 31 1 2.2841 -0.5284 -1.7546 32 1 2.0928 -3.9264 -2.9750 33 1 2.7291 1.5234 -2.8029 34 1 5.8380 1.3106 -3.1567 35 1 4.6488 1.9813 -4.3965 36 1 3.9233 3.7605 -2.7396 37 1 5.1121 3.0907 -1.4989 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704122281.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:56 Heat of formation + Delta-G solvation = -26.395105 kcal Electronic energy + Delta-G solvation = -17273.622541 eV Core-core repulsion = 14665.482846 eV Total energy + Delta-G solvation = -2608.139695 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.26299 -38.04308 -36.15619 -34.91956 -33.34664 -30.67959 -28.11818 -27.05527 -25.51751 -24.12666 -23.07545 -22.19979 -20.06285 -18.68259 -17.30335 -16.92890 -16.79470 -16.76095 -16.38374 -15.96154 -15.16355 -14.95455 -14.30309 -14.21617 -13.96222 -13.48540 -13.34897 -12.87339 -12.82294 -12.52172 -12.43809 -12.21212 -12.07171 -11.97126 -11.48717 -11.19886 -11.00007 -10.68938 -10.41089 -10.35751 -9.21129 -8.60655 -7.99895 -6.06118 1.41426 1.43360 1.53414 2.49484 2.98234 3.13375 3.30573 3.35588 3.80445 4.10432 4.22844 4.25330 4.31831 4.41382 4.48026 4.51583 4.55146 4.64792 4.70256 4.85412 4.88330 4.92052 5.00038 5.24008 5.30500 5.48092 5.65405 5.73888 5.88202 6.31689 6.40109 6.51544 6.69064 6.90109 6.97038 7.15784 7.60261 9.08673 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.019805 B = 0.010850 C = 0.009193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.448095 B = 2580.129138 C = 3045.101291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.032 3.968 4 C 0.086 3.914 5 H 0.104 0.896 6 C 0.084 3.916 7 N -0.840 5.840 8 N -0.486 5.486 9 C 0.234 3.766 10 C -0.505 4.505 11 H 0.054 0.946 12 C -0.002 4.002 13 N -0.933 5.933 14 Si 0.954 3.046 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.268 1.268 18 C 0.008 3.992 19 C -0.165 4.165 20 C -0.149 4.149 21 H 0.033 0.967 22 H 0.073 0.927 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.343 0.657 29 H 0.340 0.660 30 H 0.002 0.998 31 H -0.016 1.016 32 H 0.256 0.744 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.267 12.284 6.378 13.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.047 4.047 4 C -0.023 4.023 5 H 0.122 0.878 6 C -0.047 4.047 7 N -0.371 5.371 8 N -0.209 5.209 9 C 0.109 3.891 10 C -0.544 4.544 11 H 0.072 0.928 12 C -0.198 4.198 13 N -0.576 5.576 14 Si 0.780 3.220 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.192 1.192 18 C -0.102 4.102 19 C -0.203 4.203 20 C -0.186 4.186 21 H 0.051 0.949 22 H 0.092 0.908 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.157 0.843 29 H 0.153 0.847 30 H 0.020 0.980 31 H 0.002 0.998 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.128 0.872 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.629 11.548 5.689 12.888 hybrid contribution -1.039 -0.256 0.016 1.070 sum -0.410 11.292 5.705 12.658 Atomic orbital electron populations 1.22717 0.81337 1.02426 0.99998 1.88270 1.20082 1.27894 1.95050 1.23324 0.96031 0.85105 1.00223 1.22003 0.90321 0.98657 0.91317 0.87790 1.21570 0.89330 0.98908 0.94920 1.58280 1.03973 1.20621 1.54241 1.61933 1.57345 1.02392 0.99198 1.19211 0.90923 0.85068 0.93941 1.21665 1.11812 1.05916 1.15013 0.92802 1.25748 0.95914 0.98277 0.99895 1.70132 1.24474 1.19658 1.43291 0.85626 0.78096 0.78564 0.79739 1.20484 1.21188 1.19204 1.22114 0.94233 0.96089 0.97738 1.22851 0.99162 1.02726 0.95575 1.23090 1.02830 0.91081 1.01633 0.94877 0.90800 0.92078 0.91401 0.94203 0.94118 0.93508 0.84326 0.84690 0.98028 0.99803 0.93564 0.93207 0.90075 0.89238 0.87234 0.87833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 11.01 113.37 1.25 2.28 16 2 O -0.39 -16.06 6.28 -148.98 -0.94 -17.00 16 3 C 0.03 1.07 5.26 71.98 0.38 1.44 16 4 C 0.09 2.97 2.48 44.92 0.11 3.09 16 5 H 0.10 2.95 7.03 -2.39 -0.02 2.94 16 6 C 0.08 2.85 5.78 86.31 0.50 3.35 16 7 N -0.84 -27.06 9.34 -186.72 -1.74 -28.81 16 8 N -0.49 -20.90 4.31 -850.41 -3.67 -24.57 16 9 C 0.23 12.81 3.12 85.55 0.27 13.08 16 10 C -0.51 -30.09 8.71 25.60 0.22 -29.87 16 11 H 0.05 3.20 7.13 -2.91 -0.02 3.18 16 12 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 13 N -0.93 -58.92 13.29 21.45 0.28 -58.63 16 14 Si 0.95 47.12 29.54 68.60 2.03 49.15 16 15 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 16 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 17 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 18 C 0.01 0.30 3.58 44.91 0.16 0.46 16 19 C -0.17 -5.90 9.80 30.62 0.30 -5.60 16 20 C -0.15 -4.25 9.73 30.62 0.30 -3.95 16 21 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 23 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 24 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.04 1.36 6.99 -2.39 -0.02 1.34 16 26 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.05 2.01 5.74 -2.38 -0.01 1.99 16 28 H 0.34 9.23 8.99 -89.69 -0.81 8.43 16 29 H 0.34 9.56 9.08 -89.70 -0.81 8.75 16 30 H 0.00 0.11 5.88 -2.39 -0.01 0.09 16 31 H -0.02 -0.94 6.08 -2.39 -0.01 -0.95 16 32 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 33 H 0.05 2.16 7.71 -2.39 -0.02 2.14 16 34 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 36 H 0.11 2.53 8.14 -2.38 -0.02 2.51 16 37 H 0.10 2.69 7.64 -2.39 -0.02 2.67 16 Total: -1.00 -70.82 294.71 -0.65 -71.46 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -0.56 Total: 23.76 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: 3.95 Total: -15.37 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -5.13 Total: -112.00 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.94 Total: -17.00 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -70.82 -0.65 -71.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704122281.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.067 kcal (2) G-P(sol) polarization free energy of solvation -70.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds