Wall clock time and date at job start Mon Mar 30 2020 03:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00431 * 2 1 4 4 H 1.48504 * 109.47393 * 240.00194 * 3 2 1 5 5 H 1.48502 * 109.46864 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47650 * 119.99869 * 3 2 1 7 7 C 1.38816 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00200 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99994 * 0.02562 * 7 2 1 10 10 S 1.65595 * 120.00268 * 179.97438 * 9 7 2 11 11 O 1.42102 * 106.40238 * 311.45791 * 10 9 7 12 12 O 1.42105 * 106.40321 * 178.53557 * 10 9 7 13 13 C 1.76205 * 107.21811 * 64.99996 * 10 9 7 14 14 C 1.38615 * 120.07182 * 270.26183 * 13 10 9 15 15 C 1.38880 * 117.96717 * 180.28771 * 14 13 10 16 16 C 1.38611 * 117.96736 * 359.45738 * 15 14 13 17 17 N 1.31938 * 119.84568 * 0.28403 * 16 15 14 18 18 N 1.28349 * 122.18457 * 359.97438 * 17 16 15 19 19 H 0.96999 * 120.00280 * 0.02562 * 1 2 3 20 20 H 0.97002 * 119.99702 * 359.97438 * 9 7 2 21 21 H 1.08005 * 121.02224 * 0.02562 * 14 13 10 22 22 H 1.08002 * 121.02028 * 179.74070 * 15 14 13 23 23 H 1.08000 * 120.08030 * 180.29881 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 16 2.1535 -3.8222 0.0005 11 8 3.1357 -3.7185 -1.0211 12 8 1.1739 -4.8511 0.0354 13 6 3.0303 -3.9183 1.5259 14 6 4.3154 -3.4078 1.6217 15 6 4.9684 -3.5122 2.8430 16 6 4.2902 -4.1102 3.8936 17 7 3.0646 -4.5633 3.7109 18 7 2.4631 -4.4713 2.5809 19 1 -0.4850 0.8400 -0.0004 20 1 0.3555 -2.3881 0.0005 21 1 4.7960 -2.9467 0.7715 22 1 5.9721 -3.1349 2.9716 23 1 4.7639 -4.2049 4.8596 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712789503.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:56 Heat of formation + Delta-G solvation = -15.309294 kcal Electronic energy + Delta-G solvation = -13797.216295 eV Core-core repulsion = 11159.384993 eV Total energy + Delta-G solvation = -2637.831302 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.031 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.54219 -36.10748 -34.85144 -34.73257 -32.92142 -32.26417 -31.19536 -24.77469 -24.54341 -24.32585 -18.92558 -18.37003 -17.46308 -17.09535 -16.65913 -16.10644 -14.80441 -14.61536 -14.34476 -14.08693 -13.56843 -12.99506 -12.14373 -11.74150 -11.46058 -11.21902 -11.04578 -10.94928 -10.75123 -10.48138 -10.19265 -10.04088 -10.00694 -9.93709 -9.57137 -8.50176 -6.73286 -4.09836 0.80735 1.03022 1.41468 3.05634 3.09518 3.11117 3.61676 3.88702 4.24805 4.41786 4.65832 4.69391 4.84794 4.95134 5.09295 5.17281 5.66767 5.86317 6.15787 6.27620 6.79105 7.23510 8.43210 8.53163 8.84722 8.98776 10.40577 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.027247 B = 0.011182 C = 0.009357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.398998 B = 2503.461091 C = 2991.739665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.033 3.967 3 Si 0.928 3.072 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.264 4.264 8 H 0.107 0.893 9 N -0.926 5.926 10 S 2.583 3.417 11 O -0.965 6.965 12 O -0.980 6.980 13 C -0.478 4.478 14 C -0.044 4.044 15 C -0.141 4.141 16 C 0.056 3.944 17 N -0.266 5.266 18 N -0.153 5.153 19 H 0.281 0.719 20 H 0.414 0.586 21 H 0.163 0.837 22 H 0.151 0.849 23 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.336 -0.245 4.095 9.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.178 4.178 3 Si 0.753 3.247 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.409 4.409 8 H 0.125 0.875 9 N -0.677 5.677 10 S 2.669 3.331 11 O -0.954 6.954 12 O -0.968 6.968 13 C -0.696 4.696 14 C -0.073 4.073 15 C -0.171 4.171 16 C -0.106 4.106 17 N -0.109 5.109 18 N 0.002 4.998 19 H 0.091 0.909 20 H 0.250 0.750 21 H 0.180 0.820 22 H 0.169 0.831 23 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 7.149 -1.778 4.202 8.481 hybrid contribution 1.616 1.846 0.394 2.485 sum 8.765 0.069 4.596 9.897 Atomic orbital electron populations 1.69687 1.06223 1.29257 1.44322 1.25423 0.95766 1.00001 0.96620 0.85959 0.79177 0.80134 0.79405 1.19093 1.20347 1.19584 1.19474 0.92484 0.83161 1.45755 0.87539 1.52226 1.17470 1.19558 1.78440 1.09014 0.73280 0.74542 0.76293 1.93477 1.61583 1.87164 1.53135 1.93426 1.58648 1.57543 1.87188 1.36963 1.06275 1.02715 1.23653 1.22235 0.93427 0.92634 0.98993 1.22421 1.01792 0.98931 0.93944 1.24371 0.93098 0.93064 1.00078 1.73055 1.07975 1.14060 1.15833 1.73116 1.26613 1.06028 0.94035 0.90855 0.75012 0.81988 0.83087 0.81350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.46 13.06 55.49 0.72 -20.74 14 2 C 0.03 0.79 5.50 -17.43 -0.10 0.69 14 3 Si 0.93 18.19 29.55 -169.99 -5.02 13.16 14 4 H -0.27 -5.12 7.11 56.52 0.40 -4.72 14 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 14 6 H -0.27 -5.17 7.11 56.52 0.40 -4.76 14 7 C -0.26 -6.28 9.63 -15.06 -0.15 -6.43 14 8 H 0.11 2.32 7.82 -52.49 -0.41 1.91 14 9 N -0.93 -21.92 5.75 31.50 0.18 -21.73 14 10 S 2.58 58.28 5.77 -107.50 -0.62 57.66 14 11 O -0.96 -22.57 17.05 -57.17 -0.97 -23.54 14 12 O -0.98 -24.45 17.87 -57.17 -1.02 -25.47 14 13 C -0.48 -9.93 6.86 -17.37 -0.12 -10.05 14 14 C -0.04 -0.74 9.66 -39.20 -0.38 -1.12 14 15 C -0.14 -1.93 10.21 -39.21 -0.40 -2.33 14 16 C 0.06 0.82 11.31 -17.37 -0.20 0.62 14 17 N -0.27 -5.09 11.50 30.55 0.35 -4.74 14 18 N -0.15 -3.35 11.28 31.20 0.35 -3.00 14 19 H 0.28 6.60 8.31 -40.82 -0.34 6.26 14 20 H 0.41 9.99 8.02 -34.47 -0.28 9.71 14 21 H 0.16 2.43 7.70 -52.48 -0.40 2.03 14 22 H 0.15 1.36 8.06 -52.49 -0.42 0.94 14 23 H 0.17 1.64 8.06 -52.49 -0.42 1.21 14 LS Contribution 234.31 15.07 3.53 3.53 Total: -1.00 -31.06 234.31 -4.91 -35.97 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -1.07 Total: 7.53 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -1.34 Total: -18.62 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 1.61 Total: -50.22 kcal Atomic # 8 Polarization: -47.02 SS G_CDS: -2.00 Total: -49.01 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.02 Total: 13.16 kcal Atomic # 16 Polarization: 58.28 SS G_CDS: -0.62 Total: 57.66 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -31.06 -4.91 -35.97 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712789503.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.661 kcal (2) G-P(sol) polarization free energy of solvation -31.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds