Wall clock time and date at job start Mon Mar 30 2020 02:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46904 * 110.99936 * 2 1 4 4 C 1.46891 * 111.00096 * 123.95285 * 2 1 3 5 5 C 1.53004 * 109.47552 * 161.90105 * 4 2 1 6 6 O 1.42899 * 110.35245 * 306.27256 * 5 4 2 7 7 C 1.54600 * 110.30533 * 68.41087 * 5 4 2 8 8 C 1.54937 * 102.91692 * 140.87727 * 7 5 4 9 9 N 1.48532 * 103.23010 * 322.58572 * 8 7 5 10 10 C 1.46895 * 111.00149 * 159.72423 * 9 8 7 11 11 C 1.50698 * 109.47249 * 52.60209 * 10 9 8 12 12 H 1.08000 * 120.00146 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00016 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99851 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99939 * 179.97438 * 13 11 10 16 16 H 1.48509 * 109.47130 * 60.00483 * 15 13 11 17 17 H 1.48500 * 109.47348 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47745 * 300.00486 * 15 13 11 19 19 C 1.47906 * 105.81962 * 39.20612 * 9 8 7 20 20 H 1.08997 * 109.47655 * 296.04645 * 1 2 3 21 21 H 1.09005 * 109.46765 * 56.04746 * 1 2 3 22 22 H 1.08998 * 109.47323 * 176.04304 * 1 2 3 23 23 H 1.09000 * 109.47427 * 194.08929 * 3 2 1 24 24 H 1.08998 * 109.47235 * 314.08863 * 3 2 1 25 25 H 1.09000 * 109.46817 * 74.08697 * 3 2 1 26 26 H 1.09000 * 109.47003 * 41.90194 * 4 2 1 27 27 H 1.08996 * 109.47831 * 281.90388 * 4 2 1 28 28 H 0.96701 * 113.99736 * 57.85371 * 6 5 4 29 29 H 1.08993 * 110.72398 * 259.23335 * 7 5 4 30 30 H 1.09000 * 110.72009 * 22.34108 * 7 5 4 31 31 H 1.09006 * 110.66518 * 204.14832 * 8 7 5 32 32 H 1.09004 * 110.66762 * 81.02219 * 8 7 5 33 33 H 1.08999 * 109.46978 * 172.60222 * 10 9 8 34 34 H 1.09005 * 109.46882 * 292.60212 * 10 9 8 35 35 H 0.97003 * 119.99812 * 179.97438 * 14 13 11 36 36 H 1.09005 * 109.91385 * 94.02374 * 19 9 8 37 37 H 1.09003 * 109.91595 * 215.12005 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1375 5 6 3.4583 -1.1292 0.8747 6 8 3.5869 -1.7941 -0.3836 7 6 4.3398 0.1406 0.9031 8 6 5.6234 -0.3450 1.6223 9 7 5.1026 -1.2769 2.6549 10 6 6.1546 -2.1923 3.1167 11 6 7.3611 -1.3965 3.5435 12 1 7.3476 -0.3186 3.4787 13 6 8.4819 -2.0446 4.0178 14 7 8.4982 -3.3572 4.0972 15 14 9.9776 -1.0582 4.5462 16 1 9.6000 -0.1399 5.6505 17 1 11.0411 -1.9835 5.0131 18 1 10.4810 -0.2671 3.3948 19 6 3.9997 -2.0202 2.0079 20 1 -0.3634 0.4512 0.9232 21 1 -0.3633 0.5740 -0.8525 22 1 -0.3634 -1.0252 -0.0709 23 1 3.0562 1.3535 -0.2502 24 1 1.4581 1.9669 -0.7381 25 1 1.8625 1.8116 0.9883 26 1 1.4115 -1.6778 1.2629 27 1 1.9278 -0.1638 2.0436 28 1 3.2616 -1.2799 -1.1352 29 1 4.5677 0.4746 -0.1090 30 1 3.8538 0.9348 1.4697 31 1 6.1441 0.4923 2.0871 32 1 6.2792 -0.8689 0.9269 33 1 5.7853 -2.7736 3.9615 34 1 6.4319 -2.8657 2.3056 35 1 9.2868 -3.8132 4.4305 36 1 4.3747 -2.9573 1.5964 37 1 3.2121 -2.2224 2.7338 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713656542.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:21 Heat of formation + Delta-G solvation = -31.408463 kcal Electronic energy + Delta-G solvation = -16737.633639 eV Core-core repulsion = 14129.276548 eV Total energy + Delta-G solvation = -2608.357091 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.54097 -36.78587 -35.13729 -32.75266 -30.57637 -29.25208 -27.66475 -26.97159 -25.09916 -22.65938 -21.64932 -20.34422 -19.68535 -16.74456 -16.07510 -15.85672 -15.34565 -15.06682 -14.63250 -14.16579 -13.87119 -13.42041 -12.89316 -12.78371 -12.42673 -12.26196 -11.98219 -11.91384 -11.73585 -11.40394 -11.18644 -10.90024 -10.76975 -10.66691 -10.34750 -10.10552 -9.85763 -9.50773 -9.07012 -8.49203 -8.44432 -7.32173 -6.01696 -4.03510 3.34171 3.38098 3.40748 3.81159 4.40871 4.54117 4.85846 4.96504 5.04911 5.14334 5.24873 5.32590 5.34141 5.38833 5.55259 5.58010 5.69083 5.75635 5.80077 5.88519 6.14454 6.17800 6.32814 6.47216 6.66384 6.71896 6.87249 6.89183 7.22329 7.41658 7.74753 7.97830 8.09218 8.20936 8.51786 9.03426 9.60670 11.09729 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.055805 B = 0.005769 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.624393 B = 4852.399430 C = 5068.431341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.548 5.548 3 C 0.007 3.993 4 C 0.035 3.965 5 C 0.132 3.868 6 O -0.552 6.552 7 C -0.152 4.152 8 C 0.055 3.945 9 N -0.515 5.515 10 C 0.184 3.816 11 C -0.514 4.514 12 H 0.062 0.938 13 C 0.057 3.943 14 N -0.897 5.897 15 Si 0.898 3.102 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.046 3.954 20 H 0.024 0.976 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.084 0.916 24 H 0.062 0.938 25 H 0.029 0.971 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.376 0.624 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.032 0.968 34 H -0.005 1.005 35 H 0.262 0.738 36 H 0.053 0.947 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.600 7.575 -8.180 17.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.141 4.141 4 C -0.093 4.093 5 C 0.090 3.910 6 O -0.358 6.358 7 C -0.190 4.190 8 C -0.073 4.073 9 N -0.240 5.240 10 C 0.058 3.942 11 C -0.553 4.553 12 H 0.081 0.919 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.726 3.274 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.083 4.083 20 H 0.043 0.957 21 H 0.085 0.915 22 H 0.086 0.914 23 H 0.102 0.898 24 H 0.080 0.920 25 H 0.048 0.952 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.224 0.776 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.013 0.987 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.250 6.987 -7.704 16.844 hybrid contribution 0.603 0.788 0.090 0.996 sum -12.648 7.775 -7.614 16.685 Atomic orbital electron populations 1.22380 0.87357 1.02215 1.00286 1.61871 1.07882 1.14008 1.43482 1.22861 1.02365 0.88623 1.00251 1.22887 0.96620 0.98191 0.91617 1.21974 0.91865 0.92101 0.85041 1.86516 1.86138 1.47029 1.16100 1.23480 0.97799 0.97450 1.00278 1.22949 0.94447 0.97045 0.92856 1.64959 1.10176 1.17765 1.31131 1.19914 0.88191 0.90966 0.95134 1.21156 0.97842 0.93508 1.42750 0.91944 1.24991 0.98795 0.94905 0.95792 1.69956 1.29666 1.07293 1.46686 0.86560 0.82102 0.79725 0.79019 1.20162 1.21299 1.20269 1.22790 0.96210 0.96364 0.92924 0.95727 0.91505 0.91357 0.89768 0.91963 0.95236 0.90377 0.93148 0.77643 0.91149 0.90830 0.90481 0.93848 0.94968 0.98704 0.92835 0.92849 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.50 60.06 0.57 0.81 16 2 N -0.55 -6.11 4.19 -251.27 -1.05 -7.16 16 3 C 0.01 0.07 8.32 60.07 0.50 0.57 16 4 C 0.04 0.46 4.14 -3.83 -0.02 0.45 16 5 C 0.13 2.09 1.15 -89.26 -0.10 1.99 16 6 O -0.55 -9.00 12.93 -35.23 -0.46 -9.45 16 7 C -0.15 -2.37 4.34 -24.87 -0.11 -2.48 16 8 C 0.06 1.12 5.55 -1.90 -0.01 1.11 16 9 N -0.52 -11.60 5.39 -231.89 -1.25 -12.85 16 10 C 0.18 4.97 4.79 -4.98 -0.02 4.95 16 11 C -0.51 -14.70 8.56 -34.44 -0.29 -15.00 16 12 H 0.06 1.74 6.52 -52.49 -0.34 1.40 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 15 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 19 C 0.05 0.89 6.17 -2.75 -0.02 0.88 16 20 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 21 H 0.07 0.52 8.02 -51.93 -0.42 0.11 16 22 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 23 H 0.08 0.88 4.76 -51.93 -0.25 0.64 16 24 H 0.06 0.53 7.94 -51.93 -0.41 0.12 16 25 H 0.03 0.31 7.73 -51.93 -0.40 -0.10 16 26 H 0.08 1.01 7.92 -51.93 -0.41 0.60 16 27 H 0.05 0.68 7.72 -51.93 -0.40 0.28 16 28 H 0.38 4.96 8.35 45.56 0.38 5.34 16 29 H 0.07 0.98 6.98 -51.93 -0.36 0.62 16 30 H 0.07 1.07 6.47 -51.93 -0.34 0.73 16 31 H 0.08 1.58 7.15 -51.93 -0.37 1.21 16 32 H 0.04 0.96 8.02 -51.93 -0.42 0.54 16 33 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.00 -0.14 7.81 -51.93 -0.41 -0.55 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.05 1.14 7.39 -51.93 -0.38 0.75 16 37 H 0.07 1.33 7.69 -51.93 -0.40 0.93 16 LS Contribution 287.77 15.07 4.34 4.34 Total: -1.00 -30.91 287.77 -7.63 -38.54 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -5.32 Total: 1.34 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 0.40 Total: -5.18 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -1.56 Total: -46.41 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.46 Total: -9.45 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.91 -7.63 -38.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713656542.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.130 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds