Wall clock time and date at job start Mon Mar 30 2020 02:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46904 * 110.99936 * 2 1 4 4 C 1.46891 * 111.00096 * 123.95285 * 2 1 3 5 5 C 1.53004 * 109.47552 * 161.90105 * 4 2 1 6 6 O 1.42899 * 110.35245 * 306.27256 * 5 4 2 7 7 C 1.54600 * 110.30533 * 68.41087 * 5 4 2 8 8 C 1.54937 * 102.91692 * 140.87727 * 7 5 4 9 9 N 1.48532 * 103.23010 * 322.58572 * 8 7 5 10 10 C 1.46895 * 111.00149 * 159.72423 * 9 8 7 11 11 C 1.50698 * 109.47249 * 52.60209 * 10 9 8 12 12 H 1.08000 * 120.00146 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00016 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99851 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99939 * 179.97438 * 13 11 10 16 16 H 1.48509 * 109.47130 * 60.00483 * 15 13 11 17 17 H 1.48500 * 109.47348 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47745 * 300.00486 * 15 13 11 19 19 C 1.47906 * 105.81962 * 39.20612 * 9 8 7 20 20 H 1.08997 * 109.47655 * 296.04645 * 1 2 3 21 21 H 1.09005 * 109.46765 * 56.04746 * 1 2 3 22 22 H 1.08998 * 109.47323 * 176.04304 * 1 2 3 23 23 H 1.09000 * 109.47427 * 194.08929 * 3 2 1 24 24 H 1.08998 * 109.47235 * 314.08863 * 3 2 1 25 25 H 1.09000 * 109.46817 * 74.08697 * 3 2 1 26 26 H 1.09000 * 109.47003 * 41.90194 * 4 2 1 27 27 H 1.08996 * 109.47831 * 281.90388 * 4 2 1 28 28 H 0.96701 * 113.99736 * 57.85371 * 6 5 4 29 29 H 1.08993 * 110.72398 * 259.23335 * 7 5 4 30 30 H 1.09000 * 110.72009 * 22.34108 * 7 5 4 31 31 H 1.09006 * 110.66518 * 204.14832 * 8 7 5 32 32 H 1.09004 * 110.66762 * 81.02219 * 8 7 5 33 33 H 1.08999 * 109.46978 * 172.60222 * 10 9 8 34 34 H 1.09005 * 109.46882 * 292.60212 * 10 9 8 35 35 H 0.97003 * 119.99812 * 179.97438 * 14 13 11 36 36 H 1.09005 * 109.91385 * 94.02374 * 19 9 8 37 37 H 1.09003 * 109.91595 * 215.12005 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1375 5 6 3.4583 -1.1292 0.8747 6 8 3.5869 -1.7941 -0.3836 7 6 4.3398 0.1406 0.9031 8 6 5.6234 -0.3450 1.6223 9 7 5.1026 -1.2769 2.6549 10 6 6.1546 -2.1923 3.1167 11 6 7.3611 -1.3965 3.5435 12 1 7.3476 -0.3186 3.4787 13 6 8.4819 -2.0446 4.0178 14 7 8.4982 -3.3572 4.0972 15 14 9.9776 -1.0582 4.5462 16 1 9.6000 -0.1399 5.6505 17 1 11.0411 -1.9835 5.0131 18 1 10.4810 -0.2671 3.3948 19 6 3.9997 -2.0202 2.0079 20 1 -0.3634 0.4512 0.9232 21 1 -0.3633 0.5740 -0.8525 22 1 -0.3634 -1.0252 -0.0709 23 1 3.0562 1.3535 -0.2502 24 1 1.4581 1.9669 -0.7381 25 1 1.8625 1.8116 0.9883 26 1 1.4115 -1.6778 1.2629 27 1 1.9278 -0.1638 2.0436 28 1 3.2616 -1.2799 -1.1352 29 1 4.5677 0.4746 -0.1090 30 1 3.8538 0.9348 1.4697 31 1 6.1441 0.4923 2.0871 32 1 6.2792 -0.8689 0.9269 33 1 5.7853 -2.7736 3.9615 34 1 6.4319 -2.8657 2.3056 35 1 9.2868 -3.8132 4.4305 36 1 4.3747 -2.9573 1.5964 37 1 3.2121 -2.2224 2.7338 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713656542.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:21 Heat of formation + Delta-G solvation = -57.091975 kcal Electronic energy + Delta-G solvation = -16738.747360 eV Core-core repulsion = 14129.276548 eV Total energy + Delta-G solvation = -2609.470811 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.87638 -38.03820 -36.49213 -34.84365 -32.19393 -30.59492 -28.95222 -28.29700 -26.58158 -24.52241 -22.64515 -22.02844 -21.13229 -18.55406 -17.72378 -17.14026 -16.57732 -16.48006 -16.04378 -15.54959 -15.22760 -14.99273 -14.44906 -14.21476 -13.74798 -13.62673 -13.40140 -13.06999 -12.99351 -12.74121 -12.67866 -12.58427 -12.49107 -12.17996 -12.06414 -11.70330 -11.48420 -11.14931 -10.78697 -10.65243 -9.34832 -9.22796 -8.24154 -6.35516 1.39663 1.43744 1.51671 2.38379 2.92217 3.08357 3.13605 3.48198 3.66552 3.83664 3.98859 4.28246 4.35383 4.37371 4.51242 4.62010 4.66048 4.71141 4.78334 4.80481 4.85843 4.96649 5.00373 5.04624 5.09275 5.15530 5.21210 5.30482 5.58239 5.89743 5.98296 6.08693 6.17145 6.45590 6.79896 6.96128 7.34686 8.88237 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.055805 B = 0.005769 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.624393 B = 4852.399430 C = 5068.431341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.553 5.553 3 C 0.005 3.995 4 C 0.046 3.954 5 C 0.140 3.860 6 O -0.567 6.567 7 C -0.134 4.134 8 C 0.050 3.950 9 N -0.520 5.520 10 C 0.199 3.801 11 C -0.532 4.532 12 H 0.068 0.932 13 C 0.001 3.999 14 N -0.935 5.935 15 Si 0.974 3.026 16 H -0.265 1.265 17 H -0.282 1.282 18 H -0.266 1.266 19 C 0.040 3.960 20 H 0.027 0.973 21 H 0.083 0.917 22 H 0.069 0.931 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.028 0.972 26 H 0.080 0.920 27 H 0.050 0.950 28 H 0.391 0.609 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.017 0.983 33 H 0.004 0.996 34 H -0.041 1.041 35 H 0.266 0.734 36 H 0.025 0.975 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.406 9.772 -8.826 19.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.277 5.277 3 C -0.143 4.143 4 C -0.083 4.083 5 C 0.098 3.902 6 O -0.376 6.376 7 C -0.171 4.171 8 C -0.078 4.078 9 N -0.244 5.244 10 C 0.072 3.928 11 C -0.570 4.570 12 H 0.086 0.914 13 C -0.198 4.198 14 N -0.575 5.575 15 Si 0.798 3.202 16 H -0.190 1.190 17 H -0.207 1.207 18 H -0.191 1.191 19 C -0.088 4.088 20 H 0.046 0.954 21 H 0.102 0.898 22 H 0.088 0.912 23 H 0.098 0.902 24 H 0.100 0.900 25 H 0.047 0.953 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.241 0.759 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.035 0.965 33 H 0.022 0.978 34 H -0.023 1.023 35 H 0.074 0.926 36 H 0.043 0.957 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.088 9.206 -8.372 18.797 hybrid contribution 0.794 0.063 0.245 0.833 sum -13.295 9.269 -8.127 18.131 Atomic orbital electron populations 1.22440 0.85871 1.02741 1.01196 1.61838 1.09192 1.14513 1.42150 1.22897 1.02381 0.88163 1.00830 1.22654 0.94415 0.98778 0.92425 1.21786 0.93763 0.90888 0.83783 1.86485 1.86544 1.47818 1.16732 1.23441 0.94894 0.97598 1.01214 1.22997 0.96588 0.96053 0.92161 1.64853 1.09423 1.17260 1.32870 1.19554 0.89391 0.90896 0.92949 1.21478 0.98641 0.93888 1.43024 0.91393 1.26002 1.02262 0.96005 0.95483 1.70102 1.30804 1.09236 1.47378 0.85365 0.77646 0.78185 0.79006 1.18995 1.20732 1.19081 1.22884 0.95486 0.95750 0.94719 0.95406 0.89839 0.91243 0.90178 0.90043 0.95349 0.90196 0.93166 0.75887 0.88724 0.88981 0.90851 0.96488 0.97825 1.02340 0.92572 0.95673 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.50 127.69 1.21 1.59 16 2 N -0.55 -10.60 4.19 -948.87 -3.97 -14.57 16 3 C 0.00 0.08 8.32 127.69 1.06 1.14 16 4 C 0.05 1.10 4.14 86.31 0.36 1.46 16 5 C 0.14 4.26 1.15 -9.91 -0.01 4.25 16 6 O -0.57 -17.85 12.93 -148.98 -1.93 -19.77 16 7 C -0.13 -3.92 4.34 31.80 0.14 -3.78 16 8 C 0.05 2.04 5.55 86.65 0.48 2.52 16 9 N -0.52 -23.99 5.39 -887.56 -4.78 -28.77 16 10 C 0.20 11.33 4.79 85.56 0.41 11.74 16 11 C -0.53 -31.17 8.56 25.60 0.22 -30.95 16 12 H 0.07 3.82 6.52 -2.91 -0.02 3.80 16 13 C 0.00 0.04 5.46 84.65 0.46 0.50 16 14 N -0.94 -58.10 13.29 21.45 0.28 -57.81 16 15 Si 0.97 44.91 29.54 68.60 2.03 46.93 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 19 C 0.04 1.60 6.17 86.44 0.53 2.13 16 20 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 21 H 0.08 1.00 8.02 -2.38 -0.02 0.98 16 22 H 0.07 1.04 8.07 -2.39 -0.02 1.02 16 23 H 0.08 1.39 4.76 -2.39 -0.01 1.38 16 24 H 0.08 1.06 7.94 -2.39 -0.02 1.04 16 25 H 0.03 0.49 7.73 -2.39 -0.02 0.47 16 26 H 0.08 1.90 7.92 -2.39 -0.02 1.88 16 27 H 0.05 1.22 7.72 -2.39 -0.02 1.20 16 28 H 0.39 9.46 8.35 -74.06 -0.62 8.84 16 29 H 0.09 2.36 6.98 -2.39 -0.02 2.34 16 30 H 0.09 2.41 6.47 -2.39 -0.02 2.39 16 31 H 0.07 3.01 7.15 -2.38 -0.02 2.99 16 32 H 0.02 0.77 8.02 -2.38 -0.02 0.75 16 33 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 34 H -0.04 -2.58 7.81 -2.38 -0.02 -2.60 16 35 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.02 1.13 7.39 -2.38 -0.02 1.11 16 37 H 0.09 3.20 7.69 -2.39 -0.02 3.19 16 Total: -1.00 -68.23 287.77 -3.08 -71.31 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 0.43 Total: 12.08 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 4.87 Total: -9.39 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -8.47 Total: -101.16 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -1.93 Total: -19.77 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -68.23 -3.08 -71.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713656542.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.213 kcal (2) G-P(sol) polarization free energy of solvation -68.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds