Wall clock time and date at job start Mon Mar 30 2020 02:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00139 * 2 1 4 4 C 1.46906 * 110.99953 * 123.95456 * 2 1 3 5 5 C 1.52998 * 109.47016 * 161.70345 * 4 2 1 6 6 O 1.42895 * 110.87605 * 309.29577 * 5 4 2 7 7 C 1.55136 * 110.98900 * 185.44982 * 5 4 2 8 8 C 1.54321 * 103.01910 * 206.21894 * 7 5 4 9 9 N 1.47440 * 107.23451 * 22.28156 * 8 7 5 10 10 C 1.46904 * 110.99885 * 123.25962 * 9 8 7 11 11 C 1.50696 * 109.47119 * 69.87572 * 10 9 8 12 12 H 1.08002 * 119.99796 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00312 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99727 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00323 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47270 * 180.02562 * 15 13 11 17 17 H 1.48494 * 109.47248 * 60.00088 * 15 13 11 18 18 H 1.48504 * 109.47215 * 299.99927 * 15 13 11 19 19 C 1.47845 * 108.56559 * 0.99190 * 9 8 7 20 20 H 1.09000 * 109.47285 * 296.04959 * 1 2 3 21 21 H 1.08996 * 109.47053 * 56.04724 * 1 2 3 22 22 H 1.09005 * 109.47242 * 176.04924 * 1 2 3 23 23 H 1.09002 * 109.46981 * 197.63119 * 3 2 1 24 24 H 1.09002 * 109.47045 * 317.62069 * 3 2 1 25 25 H 1.08993 * 109.47504 * 77.62482 * 3 2 1 26 26 H 1.08994 * 109.47143 * 41.69969 * 4 2 1 27 27 H 1.09000 * 109.46944 * 281.70246 * 4 2 1 28 28 H 0.96703 * 114.00368 * 297.57645 * 6 5 4 29 29 H 1.09000 * 110.71058 * 87.83614 * 7 5 4 30 30 H 1.09001 * 110.70961 * 324.60100 * 7 5 4 31 31 H 1.09003 * 109.88767 * 262.87744 * 8 7 5 32 32 H 1.08996 * 110.02659 * 141.77129 * 8 7 5 33 33 H 1.08998 * 109.46868 * 309.87630 * 10 9 8 34 34 H 1.09000 * 109.46699 * 189.87633 * 10 9 8 35 35 H 0.97005 * 120.00036 * 0.02562 * 14 13 11 36 36 H 1.09001 * 110.37442 * 94.73164 * 19 9 8 37 37 H 1.09002 * 110.37494 * 217.07020 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.4568 -1.1334 0.8725 6 8 3.6044 -1.7385 -0.4136 7 6 4.0084 -2.0589 1.9887 8 6 5.5244 -1.7717 1.9608 9 7 5.7065 -0.4457 1.3426 10 6 6.4422 0.4564 2.2388 11 6 7.8749 0.0014 2.3440 12 1 8.2060 -0.8704 1.7993 13 6 8.7634 0.6987 3.1348 14 7 8.3606 1.7612 3.7969 15 14 10.5396 0.1351 3.2647 16 1 11.2833 1.0469 4.1707 17 1 11.1652 0.1559 1.9181 18 1 10.5822 -1.2459 3.8090 19 6 4.3755 0.1061 1.0113 20 1 -0.3634 0.4513 0.9233 21 1 -0.3633 0.5739 -0.8524 22 1 -0.3634 -1.0253 -0.0708 23 1 3.0400 1.3596 -0.3113 24 1 1.4169 1.9827 -0.6927 25 1 1.9201 1.7896 1.0037 26 1 1.4093 -1.6761 1.2652 27 1 1.9310 -0.1625 2.0430 28 1 3.1235 -2.5714 -0.5140 29 1 3.8099 -3.1050 1.7553 30 1 3.5833 -1.7916 2.9562 31 1 6.0347 -2.5306 1.3677 32 1 5.9218 -1.7655 2.9757 33 1 5.9826 0.4411 3.2270 34 1 6.4112 1.4701 1.8393 35 1 7.4383 2.0541 3.7292 36 1 4.0219 0.7523 1.8147 37 1 4.4158 0.6558 0.0709 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713656544.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:23 Heat of formation + Delta-G solvation = -32.972981 kcal Electronic energy + Delta-G solvation = -16802.069843 eV Core-core repulsion = 14193.644909 eV Total energy + Delta-G solvation = -2608.424933 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.50802 -36.81305 -35.24186 -32.98778 -30.58925 -29.06900 -27.72606 -26.80391 -24.95609 -22.71795 -21.66997 -20.24002 -20.09876 -16.75691 -16.58682 -15.80727 -15.37344 -14.86397 -14.70853 -14.12495 -13.66476 -13.63956 -12.97238 -12.80512 -12.52256 -12.26449 -12.15125 -11.78057 -11.74006 -11.47920 -11.29367 -10.85827 -10.82648 -10.68249 -10.29718 -10.10570 -9.97525 -9.60172 -8.63535 -8.35497 -8.34011 -7.26071 -6.34139 -4.02426 3.46993 3.49988 3.68263 3.79336 4.51949 4.54691 4.65424 4.80273 5.07457 5.07807 5.13602 5.27433 5.37174 5.40985 5.45451 5.58349 5.62436 5.67659 5.69958 5.89595 6.00090 6.03365 6.14897 6.38654 6.52713 6.66481 6.92961 6.94257 6.97380 7.06948 7.81876 7.99429 8.05509 8.32665 8.63461 8.90465 9.68314 11.04855 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.048390 B = 0.006070 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.497954 B = 4611.713567 C = 4905.976625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.533 5.533 3 C 0.012 3.988 4 C 0.036 3.964 5 C 0.131 3.869 6 O -0.524 6.524 7 C -0.169 4.169 8 C 0.062 3.938 9 N -0.516 5.516 10 C 0.177 3.823 11 C -0.585 4.585 12 H 0.057 0.943 13 C 0.013 3.987 14 N -0.916 5.916 15 Si 1.073 2.927 16 H -0.283 1.283 17 H -0.287 1.287 18 H -0.288 1.288 19 C 0.056 3.944 20 H 0.021 0.979 21 H 0.067 0.933 22 H 0.065 0.935 23 H 0.085 0.915 24 H 0.063 0.937 25 H 0.026 0.974 26 H 0.073 0.927 27 H 0.043 0.957 28 H 0.365 0.635 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.059 0.941 33 H -0.020 1.020 34 H 0.018 0.982 35 H 0.265 0.735 36 H 0.043 0.957 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.023 -5.548 -4.648 16.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.256 5.256 3 C -0.135 4.135 4 C -0.093 4.093 5 C 0.089 3.911 6 O -0.328 6.328 7 C -0.208 4.208 8 C -0.066 4.066 9 N -0.241 5.241 10 C 0.051 3.949 11 C -0.623 4.623 12 H 0.075 0.925 13 C -0.190 4.190 14 N -0.553 5.553 15 Si 0.901 3.099 16 H -0.209 1.209 17 H -0.213 1.213 18 H -0.215 1.215 19 C -0.071 4.071 20 H 0.039 0.961 21 H 0.086 0.914 22 H 0.084 0.916 23 H 0.103 0.897 24 H 0.081 0.919 25 H 0.044 0.956 26 H 0.092 0.908 27 H 0.061 0.939 28 H 0.210 0.790 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.077 0.923 33 H -0.003 1.003 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.715 -4.921 -4.920 14.495 hybrid contribution -2.714 -0.299 0.989 2.904 sum -15.429 -5.220 -3.931 16.756 Atomic orbital electron populations 1.22421 0.87861 1.01910 1.00219 1.61866 1.06926 1.14202 1.42654 1.22758 1.02620 0.88223 0.99935 1.22779 0.96451 0.98258 0.91842 1.22205 0.91701 0.93590 0.83649 1.86637 1.74183 1.40458 1.31492 1.23511 0.98835 0.99769 0.98712 1.22557 0.92239 0.92816 0.99018 1.63586 1.13770 1.02639 1.44059 1.20030 0.94407 0.91952 0.88489 1.21974 0.94274 1.15300 1.30798 0.92488 1.25870 1.05551 0.94395 0.93223 1.70806 1.19484 1.23857 1.41125 0.83480 0.74544 0.75483 0.76362 1.20882 1.21320 1.21506 1.23226 0.89128 0.94427 1.00365 0.96080 0.91400 0.91635 0.89669 0.91863 0.95578 0.90828 0.93851 0.78951 0.90944 0.91363 0.91573 0.92293 1.00258 0.96386 0.92470 0.93932 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.48 60.06 0.57 0.81 16 2 N -0.53 -6.75 4.68 -251.26 -1.18 -7.92 16 3 C 0.01 0.16 8.76 60.06 0.53 0.69 16 4 C 0.04 0.46 4.48 -3.82 -0.02 0.44 16 5 C 0.13 2.02 1.00 -88.48 -0.09 1.94 16 6 O -0.52 -8.29 12.89 -35.23 -0.45 -8.74 16 7 C -0.17 -2.60 6.14 -24.91 -0.15 -2.75 16 8 C 0.06 1.26 6.39 -2.84 -0.02 1.24 16 9 N -0.52 -11.91 5.15 -232.69 -1.20 -13.11 16 10 C 0.18 4.76 3.61 -4.98 -0.02 4.74 16 11 C -0.58 -17.15 8.66 -34.44 -0.30 -17.44 16 12 H 0.06 1.69 7.78 -52.49 -0.41 1.28 16 13 C 0.01 0.37 5.46 -17.82 -0.10 0.28 16 14 N -0.92 -28.37 13.65 55.43 0.76 -27.61 16 15 Si 1.07 25.84 29.90 -169.99 -5.08 20.75 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 C 0.06 1.08 4.26 -2.30 -0.01 1.07 16 20 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 21 H 0.07 0.61 7.99 -51.93 -0.41 0.19 16 22 H 0.06 0.57 8.07 -51.93 -0.42 0.15 16 23 H 0.08 1.25 5.00 -51.93 -0.26 0.99 16 24 H 0.06 0.69 7.87 -51.93 -0.41 0.29 16 25 H 0.03 0.33 7.80 -51.93 -0.40 -0.08 16 26 H 0.07 0.80 7.91 -51.93 -0.41 0.39 16 27 H 0.04 0.57 7.61 -51.93 -0.39 0.18 16 28 H 0.36 4.19 9.11 45.56 0.42 4.61 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.06 1.30 7.31 -51.93 -0.38 0.92 16 33 H -0.02 -0.56 7.83 -51.93 -0.41 -0.97 16 34 H 0.02 0.51 7.94 -51.93 -0.41 0.10 16 35 H 0.27 8.19 7.22 -40.82 -0.29 7.89 16 36 H 0.04 0.81 7.51 -51.93 -0.39 0.42 16 37 H 0.08 1.64 5.99 -51.93 -0.31 1.33 16 LS Contribution 291.26 15.07 4.39 4.39 Total: -1.00 -32.88 291.26 -7.75 -40.63 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -5.38 Total: 0.63 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 0.40 Total: -9.01 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: -1.62 Total: -48.65 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.45 Total: -8.74 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -5.08 Total: 20.75 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.88 -7.75 -40.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713656544.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.657 kcal (2) G-P(sol) polarization free energy of solvation -32.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds