Wall clock time and date at job start Mon Mar 30 2020 02:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00139 * 2 1 4 4 C 1.46906 * 110.99953 * 123.95456 * 2 1 3 5 5 C 1.52998 * 109.47016 * 161.70345 * 4 2 1 6 6 O 1.42895 * 110.87605 * 309.29577 * 5 4 2 7 7 C 1.55136 * 110.98900 * 185.44982 * 5 4 2 8 8 C 1.54321 * 103.01910 * 206.21894 * 7 5 4 9 9 N 1.47440 * 107.23451 * 22.28156 * 8 7 5 10 10 C 1.46904 * 110.99885 * 123.25962 * 9 8 7 11 11 C 1.50696 * 109.47119 * 69.87572 * 10 9 8 12 12 H 1.08002 * 119.99796 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00312 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99727 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00323 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47270 * 180.02562 * 15 13 11 17 17 H 1.48494 * 109.47248 * 60.00088 * 15 13 11 18 18 H 1.48504 * 109.47215 * 299.99927 * 15 13 11 19 19 C 1.47845 * 108.56559 * 0.99190 * 9 8 7 20 20 H 1.09000 * 109.47285 * 296.04959 * 1 2 3 21 21 H 1.08996 * 109.47053 * 56.04724 * 1 2 3 22 22 H 1.09005 * 109.47242 * 176.04924 * 1 2 3 23 23 H 1.09002 * 109.46981 * 197.63119 * 3 2 1 24 24 H 1.09002 * 109.47045 * 317.62069 * 3 2 1 25 25 H 1.08993 * 109.47504 * 77.62482 * 3 2 1 26 26 H 1.08994 * 109.47143 * 41.69969 * 4 2 1 27 27 H 1.09000 * 109.46944 * 281.70246 * 4 2 1 28 28 H 0.96703 * 114.00368 * 297.57645 * 6 5 4 29 29 H 1.09000 * 110.71058 * 87.83614 * 7 5 4 30 30 H 1.09001 * 110.70961 * 324.60100 * 7 5 4 31 31 H 1.09003 * 109.88767 * 262.87744 * 8 7 5 32 32 H 1.08996 * 110.02659 * 141.77129 * 8 7 5 33 33 H 1.08998 * 109.46868 * 309.87630 * 10 9 8 34 34 H 1.09000 * 109.46699 * 189.87633 * 10 9 8 35 35 H 0.97005 * 120.00036 * 0.02562 * 14 13 11 36 36 H 1.09001 * 110.37442 * 94.73164 * 19 9 8 37 37 H 1.09002 * 110.37494 * 217.07020 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.4568 -1.1334 0.8725 6 8 3.6044 -1.7385 -0.4136 7 6 4.0084 -2.0589 1.9887 8 6 5.5244 -1.7717 1.9608 9 7 5.7065 -0.4457 1.3426 10 6 6.4422 0.4564 2.2388 11 6 7.8749 0.0014 2.3440 12 1 8.2060 -0.8704 1.7993 13 6 8.7634 0.6987 3.1348 14 7 8.3606 1.7612 3.7969 15 14 10.5396 0.1351 3.2647 16 1 11.2833 1.0469 4.1707 17 1 11.1652 0.1559 1.9181 18 1 10.5822 -1.2459 3.8090 19 6 4.3755 0.1061 1.0113 20 1 -0.3634 0.4513 0.9233 21 1 -0.3633 0.5739 -0.8524 22 1 -0.3634 -1.0253 -0.0708 23 1 3.0400 1.3596 -0.3113 24 1 1.4169 1.9827 -0.6927 25 1 1.9201 1.7896 1.0037 26 1 1.4093 -1.6761 1.2652 27 1 1.9310 -0.1625 2.0430 28 1 3.1235 -2.5714 -0.5140 29 1 3.8099 -3.1050 1.7553 30 1 3.5833 -1.7916 2.9562 31 1 6.0347 -2.5306 1.3677 32 1 5.9218 -1.7655 2.9757 33 1 5.9826 0.4411 3.2270 34 1 6.4112 1.4701 1.8393 35 1 7.4383 2.0541 3.7292 36 1 4.0219 0.7523 1.8147 37 1 4.4158 0.6558 0.0709 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713656544.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:22 Heat of formation + Delta-G solvation = -60.719388 kcal Electronic energy + Delta-G solvation = -16803.273017 eV Core-core repulsion = 14193.644909 eV Total energy + Delta-G solvation = -2609.628108 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.85930 -38.05669 -36.63230 -35.07188 -32.14177 -30.40351 -29.01281 -28.21181 -26.52866 -24.71043 -22.73814 -21.93061 -21.41954 -18.87276 -17.91868 -17.08131 -16.64276 -16.02226 -15.95490 -15.64788 -15.53536 -15.15706 -14.46270 -14.17320 -14.04688 -13.67484 -13.34209 -13.32227 -12.93121 -12.81409 -12.65889 -12.58244 -12.42711 -12.20545 -11.94299 -11.87471 -11.48716 -10.81428 -10.79229 -10.61035 -9.30267 -9.12349 -8.71443 -6.42647 1.51955 1.60930 1.81040 2.54202 2.78744 3.10624 3.21558 3.38654 3.51353 3.68731 3.87398 4.18356 4.24826 4.26612 4.39577 4.48080 4.53745 4.62528 4.68300 4.71333 4.73016 4.81052 4.82157 4.90340 4.94498 5.00180 5.10501 5.19834 5.76317 5.95887 5.97229 6.08493 6.30353 6.36476 6.59798 7.03977 7.38075 8.66573 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.048390 B = 0.006070 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.497954 B = 4611.713567 C = 4905.976625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.546 5.546 3 C 0.014 3.986 4 C 0.043 3.957 5 C 0.144 3.856 6 O -0.543 6.543 7 C -0.155 4.155 8 C 0.057 3.943 9 N -0.537 5.537 10 C 0.192 3.808 11 C -0.600 4.600 12 H 0.050 0.950 13 C -0.037 4.037 14 N -0.936 5.936 15 Si 1.123 2.877 16 H -0.281 1.281 17 H -0.271 1.271 18 H -0.268 1.268 19 C 0.053 3.947 20 H 0.025 0.975 21 H 0.075 0.925 22 H 0.081 0.919 23 H 0.060 0.940 24 H 0.079 0.921 25 H 0.022 0.978 26 H 0.104 0.896 27 H 0.039 0.961 28 H 0.387 0.613 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.033 0.967 33 H -0.039 1.039 34 H -0.007 1.007 35 H 0.252 0.748 36 H 0.038 0.962 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.218 -7.263 -5.088 18.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.134 4.134 4 C -0.086 4.086 5 C 0.102 3.898 6 O -0.350 6.350 7 C -0.194 4.194 8 C -0.071 4.071 9 N -0.261 5.261 10 C 0.065 3.935 11 C -0.638 4.638 12 H 0.069 0.931 13 C -0.234 4.234 14 N -0.573 5.573 15 Si 0.943 3.057 16 H -0.206 1.206 17 H -0.197 1.197 18 H -0.193 1.193 19 C -0.074 4.074 20 H 0.044 0.956 21 H 0.094 0.906 22 H 0.100 0.900 23 H 0.078 0.922 24 H 0.098 0.902 25 H 0.041 0.959 26 H 0.123 0.877 27 H 0.057 0.943 28 H 0.236 0.764 29 H 0.127 0.873 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.052 0.948 33 H -0.022 1.022 34 H 0.011 0.989 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.962 -6.661 -5.379 16.378 hybrid contribution -2.394 0.240 1.053 2.626 sum -16.356 -6.422 -4.325 18.095 Atomic orbital electron populations 1.22487 0.85777 1.03202 1.00838 1.61838 1.08796 1.13692 1.42587 1.22687 1.01511 0.89121 1.00109 1.22687 0.94663 0.99575 0.91668 1.21996 0.92587 0.91569 0.83682 1.86583 1.75059 1.41951 1.31373 1.23449 0.94632 1.01963 0.99373 1.22569 0.96144 0.91232 0.97149 1.63464 1.16190 1.03291 1.43146 1.19695 0.94200 0.91532 0.88062 1.22270 0.95643 1.15142 1.30784 0.93139 1.27486 1.09892 0.93684 0.92299 1.70937 1.18818 1.25120 1.42456 0.82867 0.69478 0.76069 0.77264 1.20583 1.19651 1.19263 1.23258 0.88314 0.96361 0.99510 0.95614 0.90603 0.90046 0.92172 0.90194 0.95913 0.87750 0.94304 0.76449 0.87309 0.90360 0.91746 0.94849 1.02192 0.98917 0.93894 0.94411 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.48 127.69 1.21 1.61 16 2 N -0.55 -12.52 4.68 -948.86 -4.45 -16.97 16 3 C 0.01 0.34 8.76 127.69 1.12 1.46 16 4 C 0.04 0.98 4.48 86.30 0.39 1.37 16 5 C 0.14 4.19 1.00 -9.41 -0.01 4.18 16 6 O -0.54 -15.89 12.89 -148.98 -1.92 -17.81 16 7 C -0.16 -4.42 6.14 31.77 0.20 -4.23 16 8 C 0.06 2.31 6.39 86.65 0.55 2.86 16 9 N -0.54 -25.41 5.15 -890.10 -4.58 -29.99 16 10 C 0.19 10.79 3.61 85.56 0.31 11.10 16 11 C -0.60 -36.13 8.66 25.60 0.22 -35.91 16 12 H 0.05 3.04 7.78 -2.91 -0.02 3.02 16 13 C -0.04 -2.18 5.46 84.65 0.46 -1.72 16 14 N -0.94 -59.34 13.65 21.45 0.29 -59.05 16 15 Si 1.12 51.79 29.90 68.60 2.05 53.85 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 19 C 0.05 2.06 4.26 86.77 0.37 2.43 16 20 H 0.03 0.40 8.14 -2.39 -0.02 0.39 16 21 H 0.08 1.13 7.99 -2.39 -0.02 1.11 16 22 H 0.08 1.09 8.07 -2.38 -0.02 1.07 16 23 H 0.06 1.79 5.00 -2.39 -0.01 1.78 16 24 H 0.08 1.66 7.87 -2.39 -0.02 1.64 16 25 H 0.02 0.56 7.80 -2.39 -0.02 0.54 16 26 H 0.10 1.78 7.91 -2.39 -0.02 1.76 16 27 H 0.04 0.94 7.61 -2.39 -0.02 0.92 16 28 H 0.39 7.48 9.11 -74.06 -0.67 6.81 16 29 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.08 2.10 8.04 -2.39 -0.02 2.09 16 31 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.03 1.50 7.31 -2.39 -0.02 1.48 16 33 H -0.04 -2.31 7.83 -2.39 -0.02 -2.33 16 34 H -0.01 -0.43 7.94 -2.39 -0.02 -0.45 16 35 H 0.25 16.22 7.22 -92.70 -0.67 15.55 16 36 H 0.04 1.49 7.51 -2.39 -0.02 1.47 16 37 H 0.07 2.98 5.99 -2.39 -0.01 2.97 16 Total: -1.00 -72.57 291.26 -3.32 -75.89 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.46 Total: 10.92 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: 4.82 Total: -16.84 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -8.73 Total: -106.01 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -1.92 Total: -17.81 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 2.05 Total: 53.85 kcal Total: -72.57 -3.32 -75.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713656544.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.172 kcal (2) G-P(sol) polarization free energy of solvation -72.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds