Wall clock time and date at job start Mon Mar 30 2020 03:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 111.00073 * 2 1 4 4 C 1.50708 * 109.46707 * 293.95578 * 3 2 1 5 5 H 1.07998 * 120.00252 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99807 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99958 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00179 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47168 * 59.99836 * 8 6 4 10 10 H 1.48497 * 109.47062 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46881 * 299.99818 * 8 6 4 12 12 C 1.46896 * 111.00238 * 123.95175 * 2 1 3 13 13 C 1.53003 * 109.47105 * 77.48942 * 12 2 1 14 14 O 1.42894 * 109.52325 * 294.33936 * 13 12 2 15 15 C 1.53116 * 109.52340 * 174.20444 * 13 12 2 16 16 C 1.53033 * 109.28018 * 182.37642 * 15 13 12 17 17 N 1.46848 * 109.52195 * 59.18144 * 16 15 13 18 18 C 1.46842 * 111.19928 * 298.25816 * 17 16 15 19 19 C 1.53039 * 109.52343 * 61.74510 * 18 17 16 20 20 H 1.08998 * 109.47374 * 299.64631 * 1 2 3 21 21 H 1.09001 * 109.47533 * 59.65203 * 1 2 3 22 22 H 1.09002 * 109.46999 * 179.64698 * 1 2 3 23 23 H 1.08996 * 109.47244 * 53.94879 * 3 2 1 24 24 H 1.08996 * 109.47475 * 173.95495 * 3 2 1 25 25 H 0.96998 * 120.00245 * 180.02562 * 7 6 4 26 26 H 1.08993 * 109.47302 * 317.49359 * 12 2 1 27 27 H 1.09001 * 109.47196 * 197.48807 * 12 2 1 28 28 H 0.96707 * 114.00291 * 179.87749 * 14 13 12 29 29 H 1.09005 * 109.50027 * 62.44115 * 15 13 12 30 30 H 1.08994 * 109.54334 * 302.34294 * 15 13 12 31 31 H 1.09008 * 109.46450 * 299.17109 * 16 15 13 32 32 H 1.08995 * 109.45809 * 179.19704 * 16 15 13 33 33 H 1.00903 * 110.99946 * 62.35991 * 17 16 15 34 34 H 1.09005 * 109.46403 * 181.75320 * 18 17 16 35 35 H 1.08996 * 109.46755 * 301.72239 * 18 17 16 36 36 H 1.08999 * 109.50708 * 180.87987 * 19 18 17 37 37 H 1.08999 * 109.54115 * 60.77540 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0471 -1.2985 5 1 1.0745 1.5112 -2.0488 6 6 2.0266 3.3495 -1.5286 7 7 2.7118 4.0019 -0.6151 8 14 1.5828 4.1868 -3.1383 9 1 0.1057 4.2229 -3.2867 10 1 2.1149 5.5732 -3.1383 11 1 2.1756 3.4297 -4.2699 12 6 1.9955 -0.7659 1.1376 13 6 1.8865 -2.2625 0.8389 14 8 0.5092 -2.6340 0.7561 15 6 2.5648 -3.0582 1.9575 16 6 2.5048 -4.5506 1.6239 17 7 3.1828 -4.7951 0.3445 18 6 2.5203 -4.0787 -0.7529 19 6 2.5808 -2.5722 -0.4903 20 1 -0.3634 0.5083 0.8931 21 1 -0.3634 0.5192 -0.8868 22 1 -0.3633 -1.0277 -0.0063 23 1 1.5611 1.9274 0.8308 24 1 3.0797 1.3445 0.1082 25 1 2.9858 4.9182 -0.7768 26 1 1.4185 -0.5310 2.0319 27 1 3.0407 -0.5030 1.3000 28 1 0.3652 -3.5713 0.5666 29 1 2.0479 -2.8749 2.8995 30 1 3.6055 -2.7469 2.0469 31 1 1.4636 -4.8644 1.5490 32 1 2.9996 -5.1188 2.4115 33 1 4.1596 -4.5483 0.3999 34 1 3.0263 -4.3043 -1.6916 35 1 1.4791 -4.3947 -0.8167 36 1 2.0754 -2.0416 -1.2972 37 1 3.6216 -2.2524 -0.4404 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716295019.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:54 Heat of formation + Delta-G solvation = -50.274995 kcal Electronic energy + Delta-G solvation = -16910.880976 eV Core-core repulsion = 14301.705771 eV Total energy + Delta-G solvation = -2609.175205 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.82664 -36.33564 -34.89582 -32.53394 -31.05315 -30.73013 -27.32542 -26.41474 -24.17660 -22.92632 -22.04419 -20.22993 -19.62281 -17.38620 -16.32837 -15.12405 -14.92575 -14.74820 -14.70279 -14.42550 -14.03883 -13.63909 -13.18929 -12.85316 -12.17935 -12.04409 -11.76789 -11.52292 -11.39959 -11.27941 -11.08204 -10.93336 -10.81126 -10.70991 -10.54899 -10.16520 -9.84259 -9.41942 -9.14590 -8.41265 -8.39229 -7.15215 -6.00604 -4.01592 3.34744 3.38297 3.41561 4.22745 4.43464 4.45414 4.70205 4.90454 4.96139 5.16345 5.23865 5.34201 5.40546 5.42297 5.66957 5.80548 5.89586 5.93634 6.01411 6.06229 6.26374 6.36020 6.53837 6.59917 6.61739 6.98189 7.04911 7.25686 7.32328 7.39967 7.82004 7.88769 8.12541 8.28756 8.60116 9.06315 9.62421 11.10426 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.045210 B = 0.006130 C = 0.006006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.188807 B = 4566.820001 C = 4660.544822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.533 5.533 3 C 0.191 3.809 4 C -0.504 4.504 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.068 3.932 13 C 0.144 3.856 14 O -0.547 6.547 15 C -0.185 4.185 16 C 0.055 3.945 17 N -0.689 5.689 18 C 0.049 3.951 19 C -0.169 4.169 20 H 0.003 0.997 21 H 0.063 0.937 22 H 0.073 0.927 23 H -0.012 1.012 24 H 0.026 0.974 25 H 0.261 0.739 26 H 0.029 0.971 27 H 0.074 0.926 28 H 0.359 0.641 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.340 0.660 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.097 -15.445 3.560 15.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.256 5.256 3 C 0.066 3.934 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.061 4.061 13 C 0.103 3.897 14 O -0.354 6.354 15 C -0.225 4.225 16 C -0.074 4.074 17 N -0.318 5.318 18 C -0.080 4.080 19 C -0.208 4.208 20 H 0.022 0.978 21 H 0.082 0.918 22 H 0.092 0.908 23 H 0.006 0.994 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.092 0.908 28 H 0.207 0.793 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.158 0.842 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.266 -15.450 3.159 15.772 hybrid contribution 0.004 1.485 0.102 1.488 sum -0.262 -13.966 3.262 14.344 Atomic orbital electron populations 1.22396 0.88310 1.01053 0.99601 1.62028 1.07605 1.17110 1.38888 1.19761 0.95060 0.82031 0.96573 1.21128 1.34632 0.96884 1.01656 0.91940 1.24996 0.95358 0.97353 0.96993 1.69951 1.38516 1.11453 1.34145 0.86555 0.78707 0.78306 0.83801 1.20287 1.21383 1.20189 1.22009 0.99891 0.90819 0.93374 1.21259 0.81036 0.94536 0.92851 1.86663 1.24947 1.29511 1.94261 1.22937 1.01889 0.97421 1.00272 1.21999 0.99848 0.93923 0.91673 1.60741 1.06789 1.60106 1.04136 1.22119 0.99663 0.91857 0.94356 1.22706 1.01752 0.96568 0.99784 0.97829 0.91784 0.90841 0.99395 0.95571 0.92928 0.95290 0.90766 0.79333 0.90961 0.91114 0.91057 0.90719 0.84236 0.90566 0.91191 0.88516 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 9.08 60.06 0.55 1.28 16 2 N -0.53 -11.79 3.73 -244.37 -0.91 -12.70 16 3 C 0.19 5.11 4.70 -4.97 -0.02 5.08 16 4 C -0.50 -14.46 8.51 -34.44 -0.29 -14.75 16 5 H 0.06 1.77 7.10 -52.49 -0.37 1.40 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 8 Si 0.90 21.97 29.54 -169.99 -5.02 16.94 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.07 1.27 4.36 -3.82 -0.02 1.25 16 13 C 0.14 2.10 0.88 -90.49 -0.08 2.02 16 14 O -0.55 -7.98 10.11 -35.23 -0.36 -8.33 16 15 C -0.19 -2.16 5.09 -26.65 -0.14 -2.30 16 16 C 0.06 0.55 6.32 -3.84 -0.02 0.52 16 17 N -0.69 -7.15 6.87 -113.82 -0.78 -7.93 16 18 C 0.05 0.56 6.32 -3.84 -0.02 0.53 16 19 C -0.17 -2.39 4.83 -26.64 -0.13 -2.52 16 20 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 21 H 0.06 1.43 6.85 -51.93 -0.36 1.08 16 22 H 0.07 1.41 5.35 -51.93 -0.28 1.14 16 23 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 24 H 0.03 0.74 7.82 -51.93 -0.41 0.33 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.03 0.56 7.97 -51.93 -0.41 0.14 16 27 H 0.07 1.37 7.70 -51.93 -0.40 0.97 16 28 H 0.36 4.06 5.86 45.56 0.27 4.33 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.68 6.85 -51.92 -0.36 0.32 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.34 3.31 8.86 -39.29 -0.35 2.97 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.76 6.84 -51.93 -0.36 0.40 16 36 H 0.10 1.65 7.56 -51.93 -0.39 1.26 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 284.43 15.07 4.29 4.29 Total: -1.00 -30.51 284.43 -7.83 -38.34 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.50 Total: 3.28 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -0.28 Total: -7.43 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: -0.96 Total: -47.09 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -0.36 Total: -8.33 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.51 -7.83 -38.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716295019.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.937 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds