Wall clock time and date at job start Mon Mar 30 2020 03:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 111.00073 * 2 1 4 4 C 1.50708 * 109.46707 * 293.95578 * 3 2 1 5 5 H 1.07998 * 120.00252 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99807 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99958 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00179 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47168 * 59.99836 * 8 6 4 10 10 H 1.48497 * 109.47062 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46881 * 299.99818 * 8 6 4 12 12 C 1.46896 * 111.00238 * 123.95175 * 2 1 3 13 13 C 1.53003 * 109.47105 * 77.48942 * 12 2 1 14 14 O 1.42894 * 109.52325 * 294.33936 * 13 12 2 15 15 C 1.53116 * 109.52340 * 174.20444 * 13 12 2 16 16 C 1.53033 * 109.28018 * 182.37642 * 15 13 12 17 17 N 1.46848 * 109.52195 * 59.18144 * 16 15 13 18 18 C 1.46842 * 111.19928 * 298.25816 * 17 16 15 19 19 C 1.53039 * 109.52343 * 61.74510 * 18 17 16 20 20 H 1.08998 * 109.47374 * 299.64631 * 1 2 3 21 21 H 1.09001 * 109.47533 * 59.65203 * 1 2 3 22 22 H 1.09002 * 109.46999 * 179.64698 * 1 2 3 23 23 H 1.08996 * 109.47244 * 53.94879 * 3 2 1 24 24 H 1.08996 * 109.47475 * 173.95495 * 3 2 1 25 25 H 0.96998 * 120.00245 * 180.02562 * 7 6 4 26 26 H 1.08993 * 109.47302 * 317.49359 * 12 2 1 27 27 H 1.09001 * 109.47196 * 197.48807 * 12 2 1 28 28 H 0.96707 * 114.00291 * 179.87749 * 14 13 12 29 29 H 1.09005 * 109.50027 * 62.44115 * 15 13 12 30 30 H 1.08994 * 109.54334 * 302.34294 * 15 13 12 31 31 H 1.09008 * 109.46450 * 299.17109 * 16 15 13 32 32 H 1.08995 * 109.45809 * 179.19704 * 16 15 13 33 33 H 1.00903 * 110.99946 * 62.35991 * 17 16 15 34 34 H 1.09005 * 109.46403 * 181.75320 * 18 17 16 35 35 H 1.08996 * 109.46755 * 301.72239 * 18 17 16 36 36 H 1.08999 * 109.50708 * 180.87987 * 19 18 17 37 37 H 1.08999 * 109.54115 * 60.77540 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0471 -1.2985 5 1 1.0745 1.5112 -2.0488 6 6 2.0266 3.3495 -1.5286 7 7 2.7118 4.0019 -0.6151 8 14 1.5828 4.1868 -3.1383 9 1 0.1057 4.2229 -3.2867 10 1 2.1149 5.5732 -3.1383 11 1 2.1756 3.4297 -4.2699 12 6 1.9955 -0.7659 1.1376 13 6 1.8865 -2.2625 0.8389 14 8 0.5092 -2.6340 0.7561 15 6 2.5648 -3.0582 1.9575 16 6 2.5048 -4.5506 1.6239 17 7 3.1828 -4.7951 0.3445 18 6 2.5203 -4.0787 -0.7529 19 6 2.5808 -2.5722 -0.4903 20 1 -0.3634 0.5083 0.8931 21 1 -0.3634 0.5192 -0.8868 22 1 -0.3633 -1.0277 -0.0063 23 1 1.5611 1.9274 0.8308 24 1 3.0797 1.3445 0.1082 25 1 2.9858 4.9182 -0.7768 26 1 1.4185 -0.5310 2.0319 27 1 3.0407 -0.5030 1.3000 28 1 0.3652 -3.5713 0.5666 29 1 2.0479 -2.8749 2.8995 30 1 3.6055 -2.7469 2.0469 31 1 1.4636 -4.8644 1.5490 32 1 2.9996 -5.1188 2.4115 33 1 4.1596 -4.5483 0.3999 34 1 3.0263 -4.3043 -1.6916 35 1 1.4791 -4.3947 -0.8167 36 1 2.0754 -2.0416 -1.2972 37 1 3.6216 -2.2524 -0.4404 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716295019.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:54 Heat of formation + Delta-G solvation = -74.465827 kcal Electronic energy + Delta-G solvation = -16911.929969 eV Core-core repulsion = 14301.705771 eV Total energy + Delta-G solvation = -2610.224198 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.95467 -37.95961 -36.09448 -34.65533 -32.25741 -31.77558 -29.33380 -27.94440 -25.95503 -23.93796 -23.43037 -21.86686 -20.82806 -18.53063 -18.45580 -16.78624 -16.39056 -16.10404 -15.80365 -15.64792 -15.49307 -15.03639 -14.61064 -14.49094 -13.86332 -13.40453 -13.16857 -13.09041 -12.85334 -12.71910 -12.53844 -12.51516 -12.26611 -12.11696 -12.00517 -11.90093 -11.64848 -11.22119 -10.64117 -10.53893 -9.30656 -9.02447 -8.22948 -6.33542 1.39100 1.42783 1.50789 2.38473 3.09016 3.19910 3.32444 3.42821 3.81983 3.90942 4.00893 4.18403 4.29685 4.41931 4.52402 4.56828 4.73142 4.74313 4.78377 4.86253 4.97706 5.04144 5.10895 5.14424 5.20836 5.24940 5.43358 5.45176 5.63120 6.01726 6.09030 6.31108 6.45724 6.60114 6.82494 6.89087 7.36332 8.88248 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.045210 B = 0.006130 C = 0.006006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.188807 B = 4566.820001 C = 4660.544822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.532 5.532 3 C 0.205 3.795 4 C -0.524 4.524 5 H 0.062 0.938 6 C 0.000 4.000 7 N -0.936 5.936 8 Si 0.972 3.028 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.267 1.267 12 C 0.063 3.937 13 C 0.152 3.848 14 O -0.560 6.560 15 C -0.177 4.177 16 C 0.061 3.939 17 N -0.686 5.686 18 C 0.060 3.940 19 C -0.163 4.163 20 H -0.006 1.006 21 H 0.048 0.952 22 H 0.098 0.902 23 H -0.045 1.045 24 H 0.003 0.997 25 H 0.265 0.735 26 H 0.021 0.979 27 H 0.068 0.932 28 H 0.377 0.623 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.345 0.655 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.445 -17.183 2.921 17.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.255 5.255 3 C 0.079 3.921 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.197 4.197 7 N -0.577 5.577 8 Si 0.796 3.204 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.191 1.191 12 C -0.065 4.065 13 C 0.111 3.889 14 O -0.369 6.369 15 C -0.217 4.217 16 C -0.069 4.069 17 N -0.314 5.314 18 C -0.070 4.070 19 C -0.203 4.203 20 H 0.012 0.988 21 H 0.067 0.933 22 H 0.117 0.883 23 H -0.028 1.028 24 H 0.021 0.979 25 H 0.074 0.926 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.228 0.772 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.163 0.837 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.617 -17.230 2.528 17.425 hybrid contribution 0.117 2.000 0.366 2.037 sum -0.500 -15.230 2.894 15.511 Atomic orbital electron populations 1.22358 0.87578 1.02245 0.98345 1.61997 1.08195 1.14487 1.40854 1.19441 0.93470 0.84269 0.94917 1.21420 1.34952 0.97597 1.02240 0.91968 1.25952 0.94931 0.97988 1.00875 1.70083 1.39343 1.11912 1.36326 0.85401 0.78806 0.77190 0.79014 1.19308 1.20673 1.19142 1.22155 0.99129 0.93410 0.91837 1.21040 0.81649 0.91906 0.94298 1.86559 1.24684 1.31309 1.94397 1.22867 1.01442 0.98451 0.98914 1.22048 1.00690 0.92296 0.91850 1.60770 1.07161 1.59377 1.04098 1.22036 1.00538 0.89311 0.95083 1.22626 1.00534 0.98734 0.98378 0.98791 0.93297 0.88337 1.02768 0.97873 0.92632 0.96043 0.91371 0.77207 0.90803 0.91043 0.90133 0.88821 0.83690 0.89906 0.90224 0.91668 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.84 9.08 127.69 1.16 3.00 16 2 N -0.53 -24.19 3.73 -927.06 -3.46 -27.65 16 3 C 0.21 11.47 4.70 85.56 0.40 11.88 16 4 C -0.52 -30.73 8.51 25.60 0.22 -30.51 16 5 H 0.06 3.58 7.10 -2.91 -0.02 3.56 16 6 C 0.00 0.02 5.46 84.65 0.46 0.48 16 7 N -0.94 -57.65 13.29 21.45 0.28 -57.37 16 8 Si 0.97 45.14 29.54 68.60 2.03 47.16 16 9 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 C 0.06 2.40 4.36 86.31 0.38 2.77 16 13 C 0.15 4.26 0.88 -10.71 -0.01 4.25 16 14 O -0.56 -15.25 10.11 -148.98 -1.51 -16.76 16 15 C -0.18 -3.77 5.09 30.64 0.16 -3.61 16 16 C 0.06 0.99 6.32 86.32 0.55 1.54 16 17 N -0.69 -12.13 6.87 -514.02 -3.53 -15.66 16 18 C 0.06 1.21 6.32 86.33 0.55 1.75 16 19 C -0.16 -4.49 4.83 30.65 0.15 -4.34 16 20 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 21 H 0.05 2.22 6.85 -2.39 -0.02 2.20 16 22 H 0.10 3.72 5.35 -2.39 -0.01 3.71 16 23 H -0.05 -2.78 8.12 -2.39 -0.02 -2.80 16 24 H 0.00 0.19 7.82 -2.39 -0.02 0.17 16 25 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 26 H 0.02 0.83 7.97 -2.39 -0.02 0.82 16 27 H 0.07 2.62 7.70 -2.39 -0.02 2.60 16 28 H 0.38 7.40 5.86 -74.05 -0.43 6.97 16 29 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 1.21 6.85 -2.38 -0.02 1.19 16 32 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.35 5.77 8.86 -89.69 -0.79 4.97 16 34 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.08 1.48 6.84 -2.39 -0.02 1.46 16 36 H 0.06 2.22 7.56 -2.39 -0.02 2.21 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -66.40 284.43 -2.35 -68.75 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -0.17 Total: 14.31 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 4.00 Total: -12.79 kcal Atomic # 7 Polarization: -93.98 SS G_CDS: -6.70 Total: -100.68 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -1.51 Total: -16.76 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -66.40 -2.35 -68.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716295019.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.714 kcal (2) G-P(sol) polarization free energy of solvation -66.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds