Wall clock time and date at job start Mon Mar 30 2020 03:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42909 * 114.00103 * 2 1 4 4 C 1.53000 * 109.46883 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.46832 * 65.00204 * 4 3 2 6 6 C 1.46904 * 110.99683 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47033 * 180.02562 * 6 5 4 8 8 H 1.09004 * 110.91452 * 302.54652 * 7 6 5 9 9 C 1.55448 * 111.11787 * 178.55808 * 7 6 5 10 10 C 1.54321 * 102.96961 * 206.45980 * 9 7 6 11 11 N 1.47026 * 107.26791 * 22.19024 * 10 9 7 12 12 C 1.36940 * 125.64258 * 181.03445 * 11 10 9 13 13 H 1.08003 * 119.99660 * 180.02562 * 12 11 10 14 14 C 1.38811 * 120.00559 * 0.02875 * 12 11 10 15 15 N 1.31617 * 119.99776 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00230 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46764 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46723 * 120.00066 * 16 14 12 19 19 H 1.48499 * 109.47140 * 239.99844 * 16 14 12 20 20 C 1.47419 * 108.70576 * 1.06162 * 11 10 9 21 21 H 1.09001 * 109.47584 * 59.99741 * 1 2 3 22 22 H 1.08997 * 109.47515 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47140 * 300.00109 * 1 2 3 24 24 H 1.09001 * 109.46770 * 59.99954 * 3 2 1 25 25 H 1.08999 * 109.46945 * 299.99916 * 3 2 1 26 26 H 1.08998 * 109.46966 * 305.00121 * 4 3 2 27 27 H 1.09003 * 109.46776 * 184.99936 * 4 3 2 28 28 H 1.00895 * 111.00348 * 303.95093 * 5 4 3 29 29 H 1.08997 * 109.47439 * 60.00145 * 6 5 4 30 30 H 1.09005 * 109.47096 * 299.99996 * 6 5 4 31 31 H 1.08998 * 110.70855 * 88.08785 * 9 7 6 32 32 H 1.08998 * 110.85957 * 324.90400 * 9 7 6 33 33 H 1.08998 * 109.88101 * 262.77542 * 10 9 7 34 34 H 1.08997 * 110.01327 * 141.67909 * 10 9 7 35 35 H 0.97004 * 120.00521 * 179.97438 * 15 14 12 36 36 H 1.09002 * 110.36926 * 94.70918 * 20 11 10 37 37 H 1.08995 * 110.36556 * 216.92202 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9778 0.5623 -1.2543 6 6 5.4404 0.4303 -1.2895 7 6 5.8623 -0.2198 -2.6087 8 1 5.3832 -1.1908 -2.7347 9 6 7.4089 -0.3452 -2.7019 10 6 7.6657 -0.3401 -4.2236 11 7 6.5042 0.2983 -4.8601 12 6 6.3320 0.4806 -6.2063 13 1 5.4394 0.9634 -6.5760 14 6 7.3045 0.0449 -7.0958 15 7 8.3925 -0.5431 -6.6453 16 14 7.0692 0.2929 -8.9323 17 1 5.7726 0.9740 -9.1775 18 1 8.1753 1.1286 -9.4646 19 1 7.0729 -1.0261 -9.6144 20 6 5.5562 0.7103 -3.8090 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.6886 1.8464 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 3.8507 0.5685 0.8427 27 1 3.9784 2.1765 0.0902 28 1 3.5304 -0.3315 -1.3921 29 1 5.7694 -0.1909 -0.4564 30 1 5.8964 1.4171 -1.2090 31 1 7.7472 -1.2809 -2.2569 32 1 7.8966 0.5052 -2.2256 33 1 7.7708 -1.3630 -4.5852 34 1 8.5693 0.2268 -4.4475 35 1 9.0720 -0.8480 -7.2668 36 1 5.7235 1.7517 -3.5342 37 1 4.5298 0.5681 -4.1470 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719054901.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:42 Heat of formation + Delta-G solvation = -25.827325 kcal Electronic energy + Delta-G solvation = -16017.656409 eV Core-core repulsion = 13409.541335 eV Total energy + Delta-G solvation = -2608.115075 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.34361 -37.56910 -35.35248 -32.57888 -30.37685 -28.96508 -27.42485 -26.22115 -24.87129 -22.86706 -21.88298 -19.87715 -19.46728 -16.72768 -16.71507 -16.14873 -15.60116 -15.13044 -14.63784 -14.44188 -14.12694 -13.64991 -12.79814 -12.73225 -12.15354 -12.08642 -11.83471 -11.69444 -11.57027 -11.14641 -11.05072 -10.75572 -10.68765 -10.05940 -9.96277 -9.83351 -9.72712 -9.66272 -9.50905 -8.49098 -8.22173 -6.68058 -5.59803 -2.91709 3.46711 3.51949 3.54723 3.64885 4.27087 4.60274 4.92492 5.12561 5.14487 5.23780 5.26334 5.38979 5.46107 5.49090 5.61912 5.65940 5.69856 5.76791 5.82658 6.11872 6.19141 6.19569 6.54761 6.66731 6.75886 6.95460 6.98948 7.16423 7.22291 7.58370 7.69278 7.75891 7.94304 8.39277 9.35043 9.96293 10.63868 11.52389 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.037258 B = 0.005037 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.336084 B = 5557.753702 C = 6088.920353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.061 3.939 4 C 0.062 3.938 5 N -0.685 5.685 6 C 0.074 3.926 7 C -0.101 4.101 8 H 0.070 0.930 9 C -0.138 4.138 10 C 0.178 3.822 11 N -0.611 5.611 12 C -0.221 4.221 13 H 0.077 0.923 14 C -0.013 4.013 15 N -0.925 5.925 16 Si 0.910 3.090 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.292 1.292 20 C 0.154 3.846 21 H 0.042 0.958 22 H 0.084 0.916 23 H 0.037 0.963 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.033 0.967 27 H 0.084 0.916 28 H 0.348 0.652 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.043 0.957 34 H 0.040 0.960 35 H 0.250 0.750 36 H 0.016 0.984 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.874 2.071 14.794 18.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C -0.016 4.016 4 C -0.068 4.068 5 N -0.317 5.317 6 C -0.056 4.056 7 C -0.121 4.121 8 H 0.088 0.912 9 C -0.177 4.177 10 C 0.053 3.947 11 N -0.337 5.337 12 C -0.350 4.350 13 H 0.095 0.905 14 C -0.208 4.208 15 N -0.573 5.573 16 Si 0.741 3.259 17 H -0.205 1.205 18 H -0.219 1.219 19 H -0.219 1.219 20 C 0.028 3.972 21 H 0.061 0.939 22 H 0.102 0.898 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.102 0.898 28 H 0.166 0.834 29 H 0.042 0.958 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.034 0.966 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.660 2.465 14.243 17.960 hybrid contribution -0.110 -0.380 -0.327 0.513 sum -10.770 2.084 13.916 17.720 Atomic orbital electron populations 1.22702 0.81108 1.02634 0.99831 1.87853 1.19693 1.28260 1.95405 1.22648 0.93761 0.84762 1.00408 1.21949 0.92877 1.00322 0.91639 1.60452 1.07115 1.30329 1.33776 1.21935 0.87080 1.00059 0.96495 1.22366 0.96326 0.99246 0.94152 0.91157 1.22928 0.94412 1.00002 1.00393 1.21104 0.90393 0.97917 0.85284 1.44573 1.18577 1.69053 1.01517 1.19143 1.03148 1.32093 0.80571 0.90469 1.24790 0.96855 1.01208 0.97979 1.69986 1.09503 1.45457 1.32376 0.86058 0.77211 0.77229 0.85406 1.20549 1.21887 1.21879 1.21398 0.93568 0.94592 0.87604 0.93915 0.89783 0.94423 0.93242 0.92117 0.94867 0.89801 0.83379 0.95782 0.91172 0.92561 0.92640 0.93857 0.94172 0.94003 0.96581 0.94253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.56 10.22 -35.23 -0.36 -4.92 16 3 C 0.06 0.63 6.28 37.16 0.23 0.86 16 4 C 0.06 0.70 6.11 -3.82 -0.02 0.67 16 5 N -0.68 -9.57 6.32 -113.78 -0.72 -10.29 16 6 C 0.07 1.09 5.15 -3.82 -0.02 1.07 16 7 C -0.10 -1.86 3.24 -88.31 -0.29 -2.15 16 8 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 9 C -0.14 -2.71 6.43 -24.74 -0.16 -2.87 16 10 C 0.18 4.55 5.38 -3.06 -0.02 4.53 16 11 N -0.61 -16.53 3.39 -170.08 -0.58 -17.11 16 12 C -0.22 -6.47 10.28 -15.06 -0.15 -6.62 16 13 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 14 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 15 N -0.92 -28.21 10.31 55.49 0.57 -27.63 16 16 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 20 C 0.15 3.43 6.52 -2.53 -0.02 3.41 16 21 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 22 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.35 4.97 8.29 -39.29 -0.33 4.65 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.05 1.01 8.05 -51.93 -0.42 0.60 16 33 H 0.04 1.22 7.38 -51.93 -0.38 0.83 16 34 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 35 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.02 0.37 8.00 -51.93 -0.42 -0.05 16 37 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 300.02 15.07 4.52 4.52 Total: -1.00 -31.91 300.02 -7.56 -39.48 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -6.55 Total: -1.72 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 0.57 Total: -0.16 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.72 Total: -55.03 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.36 Total: -4.92 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.91 -7.56 -39.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719054901.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.648 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds