Wall clock time and date at job start Mon Mar 30 2020 03:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42909 * 114.00103 * 2 1 4 4 C 1.53000 * 109.46883 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.46832 * 65.00204 * 4 3 2 6 6 C 1.46904 * 110.99683 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47033 * 180.02562 * 6 5 4 8 8 H 1.09004 * 110.91452 * 302.54652 * 7 6 5 9 9 C 1.55448 * 111.11787 * 178.55808 * 7 6 5 10 10 C 1.54321 * 102.96961 * 206.45980 * 9 7 6 11 11 N 1.47026 * 107.26791 * 22.19024 * 10 9 7 12 12 C 1.36940 * 125.64258 * 181.03445 * 11 10 9 13 13 H 1.08003 * 119.99660 * 180.02562 * 12 11 10 14 14 C 1.38811 * 120.00559 * 0.02875 * 12 11 10 15 15 N 1.31617 * 119.99776 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00230 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46764 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46723 * 120.00066 * 16 14 12 19 19 H 1.48499 * 109.47140 * 239.99844 * 16 14 12 20 20 C 1.47419 * 108.70576 * 1.06162 * 11 10 9 21 21 H 1.09001 * 109.47584 * 59.99741 * 1 2 3 22 22 H 1.08997 * 109.47515 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47140 * 300.00109 * 1 2 3 24 24 H 1.09001 * 109.46770 * 59.99954 * 3 2 1 25 25 H 1.08999 * 109.46945 * 299.99916 * 3 2 1 26 26 H 1.08998 * 109.46966 * 305.00121 * 4 3 2 27 27 H 1.09003 * 109.46776 * 184.99936 * 4 3 2 28 28 H 1.00895 * 111.00348 * 303.95093 * 5 4 3 29 29 H 1.08997 * 109.47439 * 60.00145 * 6 5 4 30 30 H 1.09005 * 109.47096 * 299.99996 * 6 5 4 31 31 H 1.08998 * 110.70855 * 88.08785 * 9 7 6 32 32 H 1.08998 * 110.85957 * 324.90400 * 9 7 6 33 33 H 1.08998 * 109.88101 * 262.77542 * 10 9 7 34 34 H 1.08997 * 110.01327 * 141.67909 * 10 9 7 35 35 H 0.97004 * 120.00521 * 179.97438 * 15 14 12 36 36 H 1.09002 * 110.36926 * 94.70918 * 20 11 10 37 37 H 1.08995 * 110.36556 * 216.92202 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9778 0.5623 -1.2543 6 6 5.4404 0.4303 -1.2895 7 6 5.8623 -0.2198 -2.6087 8 1 5.3832 -1.1908 -2.7347 9 6 7.4089 -0.3452 -2.7019 10 6 7.6657 -0.3401 -4.2236 11 7 6.5042 0.2983 -4.8601 12 6 6.3320 0.4806 -6.2063 13 1 5.4394 0.9634 -6.5760 14 6 7.3045 0.0449 -7.0958 15 7 8.3925 -0.5431 -6.6453 16 14 7.0692 0.2929 -8.9323 17 1 5.7726 0.9740 -9.1775 18 1 8.1753 1.1286 -9.4646 19 1 7.0729 -1.0261 -9.6144 20 6 5.5562 0.7103 -3.8090 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.6886 1.8464 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 3.8507 0.5685 0.8427 27 1 3.9784 2.1765 0.0902 28 1 3.5304 -0.3315 -1.3921 29 1 5.7694 -0.1909 -0.4564 30 1 5.8964 1.4171 -1.2090 31 1 7.7472 -1.2809 -2.2569 32 1 7.8966 0.5052 -2.2256 33 1 7.7708 -1.3630 -4.5852 34 1 8.5693 0.2268 -4.4475 35 1 9.0720 -0.8480 -7.2668 36 1 5.7235 1.7517 -3.5342 37 1 4.5298 0.5681 -4.1470 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719054901.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:42 Heat of formation + Delta-G solvation = -48.788014 kcal Electronic energy + Delta-G solvation = -16018.652059 eV Core-core repulsion = 13409.541335 eV Total energy + Delta-G solvation = -2609.110725 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.54287 -38.85221 -36.62123 -34.47783 -31.94795 -30.58967 -28.85742 -27.16200 -26.65903 -24.36051 -22.80898 -21.84410 -21.00898 -18.81689 -17.51562 -17.05878 -16.85022 -16.52072 -16.39724 -15.59704 -15.50469 -15.14835 -14.37205 -13.89537 -13.81722 -13.73165 -13.17665 -12.93993 -12.82513 -12.70517 -12.49328 -12.36923 -12.07357 -11.95745 -11.79825 -11.54402 -11.37309 -11.34478 -10.69920 -10.57107 -9.26405 -8.85937 -7.83164 -5.18212 1.45503 1.47234 1.57886 2.51334 2.93576 3.21585 3.34753 3.76071 3.98160 4.11114 4.16761 4.20503 4.39519 4.47445 4.56873 4.60498 4.63108 4.67086 4.73322 4.83453 4.91141 4.92675 4.96316 5.03600 5.14524 5.21913 5.46673 5.53913 5.70138 5.79192 6.13279 6.23032 6.28924 6.50893 7.13184 7.81658 8.46957 9.27795 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.037258 B = 0.005037 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.336084 B = 5557.753702 C = 6088.920353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.418 6.418 3 C 0.062 3.938 4 C 0.062 3.938 5 N -0.698 5.698 6 C 0.086 3.914 7 C -0.085 4.085 8 H 0.066 0.934 9 C -0.124 4.124 10 C 0.183 3.817 11 N -0.634 5.634 12 C -0.242 4.242 13 H 0.080 0.920 14 C -0.070 4.070 15 N -0.954 5.954 16 Si 0.980 3.020 17 H -0.266 1.266 18 H -0.291 1.291 19 H -0.291 1.291 20 C 0.153 3.847 21 H 0.043 0.957 22 H 0.091 0.909 23 H 0.053 0.947 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.038 0.962 27 H 0.095 0.905 28 H 0.345 0.655 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.007 0.993 34 H 0.004 0.996 35 H 0.246 0.754 36 H 0.018 0.982 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.010 2.580 16.094 20.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.337 6.337 3 C -0.015 4.015 4 C -0.067 4.067 5 N -0.329 5.329 6 C -0.043 4.043 7 C -0.105 4.105 8 H 0.085 0.915 9 C -0.162 4.162 10 C 0.058 3.942 11 N -0.360 5.360 12 C -0.371 4.371 13 H 0.097 0.903 14 C -0.262 4.262 15 N -0.603 5.603 16 Si 0.808 3.192 17 H -0.190 1.190 18 H -0.218 1.218 19 H -0.218 1.218 20 C 0.028 3.972 21 H 0.062 0.938 22 H 0.110 0.890 23 H 0.072 0.928 24 H 0.090 0.910 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.113 0.887 28 H 0.163 0.837 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.026 0.974 34 H 0.022 0.978 35 H 0.055 0.945 36 H 0.036 0.964 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.829 2.990 15.573 19.783 hybrid contribution 0.198 -0.524 -0.718 0.910 sum -11.631 2.466 14.855 19.027 Atomic orbital electron populations 1.22858 0.79731 1.03508 1.00660 1.87813 1.21321 1.29014 1.95584 1.22668 0.93105 0.84549 1.01141 1.22032 0.93637 1.00625 0.90404 1.60435 1.06456 1.30335 1.35718 1.21749 0.87872 1.00158 0.94567 1.22240 0.95247 0.98434 0.94549 0.91525 1.22788 0.95571 1.02111 0.95762 1.20904 0.88963 0.94982 0.89353 1.44932 1.20021 1.69166 1.01909 1.19535 1.03317 1.32049 0.82206 0.90255 1.25682 0.96649 1.01249 1.02639 1.70215 1.10181 1.46310 1.33616 0.84979 0.77578 0.77011 0.79596 1.19021 1.21769 1.21767 1.21525 0.92245 0.95427 0.87981 0.93814 0.89004 0.92833 0.90977 0.92858 0.94348 0.88714 0.83727 0.93757 0.90790 0.90195 0.90817 0.97444 0.97777 0.94482 0.96425 0.94834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.42 -8.92 10.22 -148.98 -1.52 -10.44 16 3 C 0.06 1.14 6.28 71.98 0.45 1.59 16 4 C 0.06 1.23 6.11 86.30 0.53 1.76 16 5 N -0.70 -17.95 6.32 -513.88 -3.25 -21.20 16 6 C 0.09 2.31 5.15 86.30 0.44 2.75 16 7 C -0.08 -2.99 3.24 -9.30 -0.03 -3.02 16 8 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 9 C -0.12 -4.66 6.43 31.88 0.21 -4.45 16 10 C 0.18 9.58 5.38 86.73 0.47 10.05 16 11 N -0.63 -34.88 3.39 -692.01 -2.35 -37.23 16 12 C -0.24 -14.40 10.28 84.03 0.86 -13.54 16 13 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 14 C -0.07 -4.16 5.49 84.86 0.47 -3.69 16 15 N -0.95 -59.86 10.31 21.65 0.22 -59.64 16 16 Si 0.98 47.58 29.55 68.60 2.03 49.61 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 19 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 20 C 0.15 6.74 6.52 86.85 0.57 7.30 16 21 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 22 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.34 9.24 8.29 -89.70 -0.74 8.49 16 29 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.97 8.10 -2.38 -0.02 1.95 16 31 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.07 2.53 8.05 -2.39 -0.02 2.51 16 33 H 0.01 0.43 7.38 -2.39 -0.02 0.41 16 34 H 0.00 0.23 7.50 -2.39 -0.02 0.22 16 35 H 0.25 14.90 8.31 -92.70 -0.77 14.13 16 36 H 0.02 0.79 8.00 -2.39 -0.02 0.77 16 37 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -69.81 300.02 0.61 -69.19 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 0.28 Total: 9.28 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 5.21 Total: 0.42 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -5.38 Total: -118.07 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -1.52 Total: -10.44 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -69.81 0.61 -69.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719054901.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.404 kcal (2) G-P(sol) polarization free energy of solvation -69.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds