Wall clock time and date at job start Mon Mar 30 2020 03:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.09002 * 109.87405 * 77.62372 * 3 2 1 5 5 C 1.54327 * 110.01153 * 316.52326 * 3 2 1 6 6 C 1.55153 * 102.94211 * 218.31972 * 5 3 2 7 7 C 1.54908 * 101.58630 * 35.49999 * 6 5 3 8 8 N 1.47022 * 109.88301 * 198.64044 * 3 2 1 9 9 S 1.65607 * 125.64420 * 298.54713 * 8 3 2 10 10 O 1.42097 * 106.39962 * 203.53711 * 9 8 3 11 11 O 1.42095 * 106.40271 * 336.46208 * 9 8 3 12 12 C 1.76203 * 107.21631 * 90.00140 * 9 8 3 13 13 H 1.08005 * 120.00163 * 359.97438 * 12 9 8 14 14 C 1.37874 * 119.99727 * 179.97438 * 12 9 8 15 15 N 1.31513 * 119.99750 * 179.97438 * 14 12 9 16 16 Si 1.86803 * 120.00188 * 0.02562 * 14 12 9 17 17 H 1.48494 * 109.47121 * 89.99558 * 16 14 12 18 18 H 1.48503 * 109.47131 * 209.99816 * 16 14 12 19 19 H 1.48497 * 109.47029 * 329.99434 * 16 14 12 20 20 H 4.19372 * 14.94149 * 359.97438 * 4 2 1 21 21 H 1.09006 * 110.71875 * 336.68307 * 5 3 2 22 22 H 1.09003 * 110.72034 * 99.95342 * 5 3 2 23 23 H 1.09006 * 111.00338 * 277.42810 * 6 5 3 24 24 H 1.08997 * 111.03848 * 153.59537 * 6 5 3 25 25 H 1.08992 * 110.36921 * 204.15530 * 7 6 5 26 26 H 1.09001 * 110.45822 * 81.87204 * 7 6 5 27 27 H 0.96999 * 119.99917 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0166 -0.2189 -1.0013 5 6 3.1746 -1.0514 0.9978 6 6 4.4079 -0.3480 1.6234 7 6 3.9331 1.1256 1.6742 8 7 3.1454 1.3109 0.4419 9 16 2.8682 2.7559 -0.3183 10 8 3.9232 3.6238 0.0727 11 8 2.5783 2.4466 -1.6745 12 6 1.3905 3.4297 0.3652 13 1 0.8582 2.8924 1.1363 14 6 0.9137 4.6427 -0.0844 15 7 -0.1895 5.1454 0.4254 16 14 1.8339 5.5716 -1.4186 17 1 1.3241 5.1587 -2.7507 18 1 1.6256 7.0309 -1.2393 19 1 3.2837 5.2635 -1.3261 20 1 -1.0500 -0.0005 -0.0001 21 1 2.4269 -1.2695 1.7604 22 1 3.4725 -1.9614 0.4769 23 1 5.2844 -0.4543 0.9841 24 1 4.6091 -0.7285 2.6249 25 1 4.7894 1.8000 1.6821 26 1 3.3096 1.2950 2.5520 27 1 -0.5251 5.9986 0.1088 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885895409.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:48 Heat of formation + Delta-G solvation = -19.895174 kcal Electronic energy + Delta-G solvation = -14444.842937 eV Core-core repulsion = 11910.353120 eV Total energy + Delta-G solvation = -2534.489817 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.31502 -35.65581 -34.42402 -33.00119 -32.48163 -30.47252 -28.36017 -26.34147 -22.52946 -21.15104 -19.20270 -17.87535 -17.28300 -16.66002 -15.73101 -15.16849 -14.45737 -13.60920 -13.45174 -13.43704 -13.00114 -12.81771 -12.46581 -11.80828 -11.44793 -11.29172 -11.02477 -10.76689 -10.70805 -10.61364 -10.46074 -10.01585 -9.73591 -9.71248 -9.17425 -9.12511 -8.33086 -6.76552 -5.28122 1.95929 3.07561 3.18938 3.25175 3.29383 3.37489 3.97501 4.37496 4.59848 4.67335 4.85682 4.96070 5.21107 5.45593 5.57510 5.73097 5.87730 5.98461 6.00071 6.05833 6.20510 6.38344 6.48884 6.70147 7.21794 7.53060 8.15996 8.28924 8.74676 10.36093 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.035351 B = 0.012244 C = 0.010695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.861685 B = 2286.369474 C = 2617.477241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.206 4.206 3 C 0.265 3.735 4 H 0.094 0.906 5 C -0.118 4.118 6 C -0.130 4.130 7 C 0.117 3.883 8 N -1.005 6.005 9 S 2.686 3.314 10 O -1.004 7.004 11 O -1.004 7.004 12 C -1.007 5.007 13 H 0.121 0.879 14 C 0.154 3.846 15 N -0.824 5.824 16 Si 0.798 3.202 17 H -0.246 1.246 18 H -0.254 1.254 19 H -0.221 1.221 20 H 0.215 0.785 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.157 -10.422 2.014 11.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.208 4.208 3 C 0.158 3.842 4 H 0.112 0.888 5 C -0.157 4.157 6 C -0.169 4.169 7 C -0.008 4.008 8 N -0.839 5.839 9 S 2.791 3.209 10 O -0.995 6.995 11 O -0.994 6.994 12 C -1.142 5.142 13 H 0.139 0.861 14 C -0.065 4.065 15 N -0.453 5.453 16 Si 0.618 3.382 17 H -0.170 1.170 18 H -0.178 1.178 19 H -0.143 1.143 20 H 0.232 0.768 21 H 0.097 0.903 22 H 0.100 0.900 23 H 0.094 0.906 24 H 0.099 0.901 25 H 0.101 0.899 26 H 0.082 0.918 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.613 -9.834 1.323 11.400 hybrid contribution -0.773 0.657 -0.091 1.019 sum 4.841 -9.176 1.232 10.448 Atomic orbital electron populations 1.24818 0.95774 0.97967 1.00573 1.23353 0.94638 1.02210 1.00576 1.17989 0.83312 0.83979 0.98907 0.88821 1.22654 0.97691 0.97044 0.98270 1.22796 0.97675 0.95034 1.01367 1.21939 0.95090 0.96660 0.87146 1.58831 1.65349 1.20914 1.38825 1.01103 0.76233 0.70509 0.73088 1.93454 1.59106 1.62946 1.83965 1.93400 1.86941 1.83598 1.35488 1.30476 1.30504 1.16288 1.36955 0.86067 1.24413 0.93298 0.95028 0.93802 1.69991 1.18685 1.18305 1.38368 0.87915 0.84238 0.82382 0.83625 1.16992 1.17802 1.14276 0.76788 0.90331 0.90026 0.90582 0.90091 0.89941 0.91796 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 19.25 29.55 0.57 -2.59 15 2 C -0.21 -4.00 12.47 -37.12 -0.46 -4.46 15 3 C 0.26 4.71 3.28 -69.74 -0.23 4.48 15 4 H 0.09 1.59 8.14 -51.93 -0.42 1.17 15 5 C -0.12 -1.49 6.45 -24.90 -0.16 -1.65 15 6 C -0.13 -1.55 7.08 -24.59 -0.17 -1.72 15 7 C 0.12 1.94 7.10 -2.53 -0.02 1.92 15 8 N -1.00 -20.85 3.38 -107.38 -0.36 -21.22 15 9 S 2.69 70.81 4.13 -107.50 -0.44 70.37 15 10 O -1.00 -27.80 15.34 -57.17 -0.88 -28.68 15 11 O -1.00 -28.05 16.42 -57.17 -0.94 -28.99 15 12 C -1.01 -29.25 10.29 30.60 0.31 -28.93 15 13 H 0.12 3.60 8.06 -52.48 -0.42 3.18 15 14 C 0.15 4.54 5.47 -17.82 -0.10 4.44 15 15 N -0.82 -24.30 13.96 55.43 0.77 -23.53 15 16 Si 0.80 21.11 26.54 -169.99 -4.51 16.59 15 17 H -0.25 -6.36 7.11 56.52 0.40 -5.96 15 18 H -0.25 -6.12 7.11 56.52 0.40 -5.72 15 19 H -0.22 -5.93 5.61 56.52 0.32 -5.62 15 20 H 0.22 3.14 7.80 -54.09 -0.42 2.72 15 21 H 0.08 0.96 7.84 -51.93 -0.41 0.56 15 22 H 0.08 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.08 0.83 8.14 -51.93 -0.42 0.40 15 24 H 0.08 0.75 8.14 -51.93 -0.42 0.33 15 25 H 0.08 1.35 7.78 -51.93 -0.40 0.95 15 26 H 0.06 1.02 8.14 -51.93 -0.42 0.59 15 27 H 0.28 7.47 8.31 -40.82 -0.34 7.13 15 LS Contribution 251.48 15.07 3.79 3.79 Total: -1.00 -34.24 251.48 -5.82 -40.06 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -2.99 Total: 0.12 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: -0.26 Total: -28.53 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.41 Total: -44.74 kcal Atomic # 8 Polarization: -55.85 SS G_CDS: -1.82 Total: -57.66 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.51 Total: 16.59 kcal Atomic # 16 Polarization: 70.81 SS G_CDS: -0.44 Total: 70.37 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -34.24 -5.82 -40.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885895409.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.161 kcal (2) G-P(sol) polarization free energy of solvation -34.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds