Wall clock time and date at job start Mon Mar 30 2020 03:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.09002 * 109.87405 * 77.62372 * 3 2 1 5 5 C 1.54327 * 110.01153 * 316.52326 * 3 2 1 6 6 C 1.55153 * 102.94211 * 218.31972 * 5 3 2 7 7 C 1.54908 * 101.58630 * 35.49999 * 6 5 3 8 8 N 1.47022 * 109.88301 * 198.64044 * 3 2 1 9 9 S 1.65607 * 125.64420 * 298.54713 * 8 3 2 10 10 O 1.42097 * 106.39962 * 203.53711 * 9 8 3 11 11 O 1.42095 * 106.40271 * 336.46208 * 9 8 3 12 12 C 1.76203 * 107.21631 * 90.00140 * 9 8 3 13 13 H 1.08005 * 120.00163 * 359.97438 * 12 9 8 14 14 C 1.37874 * 119.99727 * 179.97438 * 12 9 8 15 15 N 1.31513 * 119.99750 * 179.97438 * 14 12 9 16 16 Si 1.86803 * 120.00188 * 0.02562 * 14 12 9 17 17 H 1.48494 * 109.47121 * 89.99558 * 16 14 12 18 18 H 1.48503 * 109.47131 * 209.99816 * 16 14 12 19 19 H 1.48497 * 109.47029 * 329.99434 * 16 14 12 20 20 H 4.19372 * 14.94149 * 359.97438 * 4 2 1 21 21 H 1.09006 * 110.71875 * 336.68307 * 5 3 2 22 22 H 1.09003 * 110.72034 * 99.95342 * 5 3 2 23 23 H 1.09006 * 111.00338 * 277.42810 * 6 5 3 24 24 H 1.08997 * 111.03848 * 153.59537 * 6 5 3 25 25 H 1.08992 * 110.36921 * 204.15530 * 7 6 5 26 26 H 1.09001 * 110.45822 * 81.87204 * 7 6 5 27 27 H 0.96999 * 119.99917 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0166 -0.2189 -1.0013 5 6 3.1746 -1.0514 0.9978 6 6 4.4079 -0.3480 1.6234 7 6 3.9331 1.1256 1.6742 8 7 3.1454 1.3109 0.4419 9 16 2.8682 2.7559 -0.3183 10 8 3.9232 3.6238 0.0727 11 8 2.5783 2.4466 -1.6745 12 6 1.3905 3.4297 0.3652 13 1 0.8582 2.8924 1.1363 14 6 0.9137 4.6427 -0.0844 15 7 -0.1895 5.1454 0.4254 16 14 1.8339 5.5716 -1.4186 17 1 1.3241 5.1587 -2.7507 18 1 1.6256 7.0309 -1.2393 19 1 3.2837 5.2635 -1.3261 20 1 -1.0500 -0.0005 -0.0001 21 1 2.4269 -1.2695 1.7604 22 1 3.4725 -1.9614 0.4769 23 1 5.2844 -0.4543 0.9841 24 1 4.6091 -0.7285 2.6249 25 1 4.7894 1.8000 1.6821 26 1 3.3096 1.2950 2.5520 27 1 -0.5251 5.9986 0.1088 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885895409.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:48 Heat of formation + Delta-G solvation = -46.111795 kcal Electronic energy + Delta-G solvation = -14445.979775 eV Core-core repulsion = 11910.353120 eV Total energy + Delta-G solvation = -2535.626655 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.61659 -37.78494 -36.57130 -35.22452 -33.88774 -31.79108 -29.64696 -28.57583 -23.92312 -22.23341 -21.05422 -19.81688 -19.03074 -18.46214 -17.21165 -17.10917 -16.28277 -15.52054 -15.09118 -15.06254 -14.88916 -14.30339 -13.76831 -13.52829 -13.25324 -13.02783 -12.80743 -12.70456 -12.60806 -12.08819 -11.85033 -11.66656 -11.40229 -11.31911 -11.27177 -11.06117 -9.96436 -8.99604 -7.54191 -0.00195 0.99471 1.09253 1.15814 1.74675 1.84835 1.92105 2.38087 2.59456 3.25341 3.46304 3.64542 3.77119 4.17340 4.21971 4.39409 4.64497 4.73525 4.98962 4.99860 5.08948 5.14866 5.20565 5.37948 5.43806 5.66075 5.99236 6.49911 6.71976 8.18530 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.035351 B = 0.012244 C = 0.010695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.861685 B = 2286.369474 C = 2617.477241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.238 4.238 3 C 0.246 3.754 4 H 0.098 0.902 5 C -0.106 4.106 6 C -0.113 4.113 7 C 0.098 3.902 8 N -1.009 6.009 9 S 2.705 3.295 10 O -1.023 7.023 11 O -1.025 7.025 12 C -1.030 5.030 13 H 0.100 0.900 14 C 0.109 3.891 15 N -0.852 5.852 16 Si 0.821 3.179 17 H -0.239 1.239 18 H -0.214 1.214 19 H -0.231 1.231 20 H 0.241 0.759 21 H 0.083 0.917 22 H 0.118 0.882 23 H 0.092 0.908 24 H 0.117 0.883 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.180 -11.673 2.186 13.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.240 4.240 3 C 0.141 3.859 4 H 0.116 0.884 5 C -0.145 4.145 6 C -0.152 4.152 7 C -0.026 4.026 8 N -0.847 5.847 9 S 2.808 3.192 10 O -1.014 7.014 11 O -1.016 7.016 12 C -1.163 5.163 13 H 0.118 0.882 14 C -0.107 4.107 15 N -0.482 5.482 16 Si 0.638 3.362 17 H -0.163 1.163 18 H -0.136 1.136 19 H -0.153 1.153 20 H 0.257 0.743 21 H 0.101 0.899 22 H 0.136 0.864 23 H 0.110 0.890 24 H 0.136 0.864 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.611 -11.057 1.506 12.970 hybrid contribution -1.133 0.959 -0.077 1.486 sum 5.478 -10.097 1.429 11.576 Atomic orbital electron populations 1.25658 0.96905 0.97199 1.00121 1.24036 0.95828 1.02962 1.01167 1.18559 0.82712 0.83788 1.00868 0.88441 1.22707 0.97792 0.96615 0.97337 1.22830 0.97594 0.90949 1.03832 1.22369 0.94591 1.00317 0.85337 1.58465 1.65765 1.20322 1.40120 1.00239 0.74876 0.71410 0.72685 1.93417 1.58833 1.64873 1.84254 1.93359 1.87047 1.84372 1.36787 1.30949 1.32033 1.16598 1.36685 0.88174 1.25148 0.94143 0.95925 0.95519 1.70009 1.19479 1.19325 1.39420 0.87550 0.82691 0.84014 0.81936 1.16277 1.13580 1.15327 0.74304 0.89879 0.86407 0.88982 0.86443 0.90275 0.91770 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.55 19.25 74.32 1.43 -5.12 15 2 C -0.24 -9.13 12.47 31.12 0.39 -8.74 15 3 C 0.25 8.41 3.28 43.54 0.14 8.55 15 4 H 0.10 3.19 8.14 -2.39 -0.02 3.17 15 5 C -0.11 -2.31 6.45 31.78 0.21 -2.10 15 6 C -0.11 -2.26 7.08 31.98 0.23 -2.03 15 7 C 0.10 3.09 7.10 86.85 0.62 3.71 15 8 N -1.01 -41.21 3.38 -493.65 -1.67 -42.88 15 9 S 2.70 143.31 4.13 -56.49 -0.23 143.07 15 10 O -1.02 -56.84 15.34 -128.00 -1.96 -58.81 15 11 O -1.03 -57.53 16.42 -128.00 -2.10 -59.63 15 12 C -1.03 -60.98 10.29 67.73 0.70 -60.28 15 13 H 0.10 6.16 8.06 -2.91 -0.02 6.14 15 14 C 0.11 6.51 5.47 84.65 0.46 6.97 15 15 N -0.85 -50.61 13.96 21.45 0.30 -50.31 15 16 Si 0.82 42.37 26.54 68.60 1.82 44.19 15 17 H -0.24 -12.00 7.11 99.48 0.71 -11.29 15 18 H -0.21 -9.60 7.11 99.48 0.71 -8.89 15 19 H -0.23 -12.25 5.61 99.48 0.56 -11.70 15 20 H 0.24 6.84 7.80 -4.42 -0.03 6.80 15 21 H 0.08 1.76 7.84 -2.38 -0.02 1.74 15 22 H 0.12 1.77 8.14 -2.39 -0.02 1.75 15 23 H 0.09 1.59 8.14 -2.38 -0.02 1.57 15 24 H 0.12 1.57 8.14 -2.39 -0.02 1.55 15 25 H 0.08 2.51 7.78 -2.39 -0.02 2.49 15 26 H 0.06 1.98 8.14 -2.39 -0.02 1.96 15 27 H 0.29 15.52 8.31 -92.71 -0.77 14.75 15 Total: -1.00 -74.69 251.48 1.33 -73.36 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 1.01 Total: 10.04 kcal Atomic # 6 Polarization: -63.21 SS G_CDS: 4.17 Total: -59.04 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -1.37 Total: -93.18 kcal Atomic # 8 Polarization: -114.37 SS G_CDS: -4.07 Total: -118.43 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.82 Total: 44.19 kcal Atomic # 16 Polarization: 143.31 SS G_CDS: -0.23 Total: 143.07 kcal Total: -74.69 1.33 -73.36 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885895409.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.244 kcal (2) G-P(sol) polarization free energy of solvation -74.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds