Wall clock time and date at job start Mon Mar 30 2020 03:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09005 * 109.87193 * 268.96056 * 3 2 1 5 5 C 1.54318 * 110.01255 * 30.05890 * 3 2 1 6 6 C 1.55159 * 102.94324 * 141.68087 * 5 3 2 7 7 C 1.55129 * 101.48480 * 324.33463 * 6 5 3 8 8 N 1.47020 * 109.88099 * 147.94644 * 3 2 1 9 9 S 1.65608 * 125.64721 * 61.44718 * 8 3 2 10 10 O 1.42094 * 106.40389 * 336.46011 * 9 8 3 11 11 O 1.42100 * 106.39853 * 203.54113 * 9 8 3 12 12 C 1.76202 * 107.21534 * 90.00321 * 9 8 3 13 13 H 1.07994 * 119.99832 * 359.97438 * 12 9 8 14 14 C 1.37875 * 119.99608 * 180.02562 * 12 9 8 15 15 N 1.31513 * 120.00380 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99848 * 180.02562 * 14 12 9 17 17 H 1.48506 * 109.47297 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47261 * 239.99776 * 16 14 12 19 19 H 1.48500 * 109.47454 * 119.99769 * 16 14 12 20 20 H 4.19373 * 14.94098 * 359.97438 * 4 2 1 21 21 H 1.09003 * 110.72221 * 260.04199 * 5 3 2 22 22 H 1.09005 * 110.72155 * 23.31880 * 5 3 2 23 23 H 1.09003 * 111.00424 * 82.57103 * 6 5 3 24 24 H 1.08998 * 111.00670 * 206.42486 * 6 5 3 25 25 H 1.09001 * 110.49854 * 278.45621 * 7 6 5 26 26 H 1.09005 * 110.34426 * 156.05708 * 7 6 5 27 27 H 0.97001 * 119.99667 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0166 0.0194 1.0250 5 6 3.1747 -1.2541 -0.7263 6 6 4.4082 -0.7151 -1.4980 7 6 3.9287 0.7065 -1.8925 8 7 3.1455 1.1727 -0.7337 9 16 2.8681 2.7546 -0.3296 10 8 1.6786 2.7675 0.4476 11 8 3.0237 3.5072 -1.5249 12 6 4.1711 3.2542 0.7462 13 1 4.9484 2.5541 1.0142 14 6 4.1975 4.5386 1.2466 15 7 3.2506 5.3911 0.9206 16 14 5.5792 5.0686 2.3865 17 1 6.5119 3.9320 2.5956 18 1 5.0101 5.4880 3.6925 19 1 6.3138 6.2068 1.7783 20 1 -1.0499 0.0005 -0.0001 21 1 3.4727 -2.0184 -0.0085 22 1 2.4272 -1.6433 -1.4176 23 1 5.2845 -0.6701 -0.8514 24 1 4.6088 -1.3177 -2.3838 25 1 3.3008 0.6643 -2.7825 26 1 4.7835 1.3616 -2.0609 27 1 2.5333 5.1160 0.3283 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885895410.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:49 Heat of formation + Delta-G solvation = -63.977540 kcal Electronic energy + Delta-G solvation = -14376.968766 eV Core-core repulsion = 11840.567394 eV Total energy + Delta-G solvation = -2536.401372 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.65801 -37.75604 -36.59040 -35.39932 -33.92324 -31.78778 -29.69301 -27.76994 -23.90996 -22.28017 -21.44415 -20.41920 -18.67822 -18.35717 -17.23062 -16.78584 -16.18407 -15.76502 -15.15627 -15.06755 -14.39912 -14.25749 -13.81307 -13.16612 -13.11254 -12.97282 -12.76400 -12.74489 -12.44192 -12.12350 -11.96179 -11.72439 -11.38562 -11.24997 -11.14643 -10.80914 -9.98409 -9.44296 -7.69185 0.00058 1.42668 1.48786 1.72231 1.73365 1.87766 2.31337 2.55109 2.66378 3.30995 3.50704 3.60700 3.72646 4.12849 4.20717 4.33486 4.56337 4.68408 4.93168 4.94386 5.01989 5.09587 5.14170 5.35750 5.43157 5.64277 5.74051 6.43841 6.67610 7.88641 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.033251 B = 0.010716 C = 0.009742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.881408 B = 2612.276312 C = 2873.318957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.234 4.234 3 C 0.244 3.756 4 H 0.091 0.909 5 C -0.104 4.104 6 C -0.114 4.114 7 C 0.104 3.896 8 N -1.011 6.011 9 S 2.705 3.295 10 O -1.031 7.031 11 O -1.045 7.045 12 C -1.099 5.099 13 H 0.122 0.878 14 C 0.033 3.967 15 N -0.877 5.877 16 Si 1.127 2.873 17 H -0.248 1.248 18 H -0.261 1.261 19 H -0.260 1.260 20 H 0.247 0.753 21 H 0.116 0.884 22 H 0.085 0.915 23 H 0.089 0.911 24 H 0.118 0.882 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.688 -14.372 -1.732 14.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.236 4.236 3 C 0.139 3.861 4 H 0.109 0.891 5 C -0.142 4.142 6 C -0.152 4.152 7 C -0.021 4.021 8 N -0.849 5.849 9 S 2.809 3.191 10 O -1.021 7.021 11 O -1.035 7.035 12 C -1.233 5.233 13 H 0.140 0.860 14 C -0.177 4.177 15 N -0.508 5.508 16 Si 0.940 3.060 17 H -0.172 1.172 18 H -0.185 1.185 19 H -0.184 1.184 20 H 0.264 0.736 21 H 0.134 0.866 22 H 0.104 0.896 23 H 0.108 0.892 24 H 0.136 0.864 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.471 -12.534 -1.240 13.064 hybrid contribution -0.878 -0.783 -0.721 1.380 sum 2.594 -13.317 -1.961 13.708 Atomic orbital electron populations 1.25715 0.96908 0.98382 0.99496 1.24055 0.95878 1.02098 1.01546 1.18509 0.82958 0.87285 0.97382 0.89116 1.22688 0.97754 0.93823 0.99974 1.22876 0.97642 0.92666 1.02040 1.22325 0.94409 0.97985 0.87344 1.58575 1.66901 1.20876 1.38515 1.00270 0.74906 0.70460 0.73437 1.93372 1.50455 1.86019 1.72265 1.93350 1.88672 1.70072 1.51391 1.31948 1.32015 1.09806 1.49520 0.85995 1.27931 1.01718 0.91353 0.96680 1.70949 1.10811 1.38493 1.30523 0.83015 0.71426 0.77530 0.74018 1.17165 1.18526 1.18394 0.73644 0.86554 0.89631 0.89199 0.86398 0.91798 0.91149 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.42 19.25 74.32 1.43 -4.99 15 2 C -0.23 -8.89 11.24 31.13 0.35 -8.54 15 3 C 0.24 8.54 3.52 43.53 0.15 8.69 15 4 H 0.09 3.12 8.14 -2.38 -0.02 3.10 15 5 C -0.10 -2.30 6.45 31.78 0.20 -2.10 15 6 C -0.11 -2.37 7.10 32.06 0.23 -2.15 15 7 C 0.10 3.38 6.99 86.93 0.61 3.99 15 8 N -1.01 -42.50 3.37 -493.23 -1.66 -44.17 15 9 S 2.70 151.10 4.54 -56.49 -0.26 150.85 15 10 O -1.03 -62.80 15.95 -128.00 -2.04 -64.84 15 11 O -1.04 -64.12 17.22 -128.00 -2.20 -66.32 15 12 C -1.10 -62.44 9.75 67.73 0.66 -61.78 15 13 H 0.12 6.25 7.81 -2.91 -0.02 6.22 15 14 C 0.03 1.92 5.46 84.65 0.46 2.38 15 15 N -0.88 -56.12 13.66 21.45 0.29 -55.83 15 16 Si 1.13 47.49 29.90 68.60 2.05 49.54 15 17 H -0.25 -9.15 7.11 99.48 0.71 -8.44 15 18 H -0.26 -10.37 7.11 99.48 0.71 -9.67 15 19 H -0.26 -10.28 7.11 99.48 0.71 -9.57 15 20 H 0.25 6.14 7.80 -4.42 -0.03 6.11 15 21 H 0.12 1.84 8.14 -2.39 -0.02 1.82 15 22 H 0.09 1.77 7.84 -2.38 -0.02 1.75 15 23 H 0.09 1.72 8.14 -2.39 -0.02 1.70 15 24 H 0.12 1.64 8.14 -2.39 -0.02 1.62 15 25 H 0.06 1.99 8.14 -2.39 -0.02 1.97 15 26 H 0.07 2.36 8.14 -2.38 -0.02 2.34 15 27 H 0.25 17.13 6.52 -92.71 -0.60 16.53 15 Total: -1.00 -81.39 254.54 1.60 -79.79 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 1.32 Total: 15.48 kcal Atomic # 6 Polarization: -68.60 SS G_CDS: 4.10 Total: -64.50 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -1.37 Total: -100.00 kcal Atomic # 8 Polarization: -126.92 SS G_CDS: -4.25 Total: -131.17 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.05 Total: 49.54 kcal Atomic # 16 Polarization: 151.10 SS G_CDS: -0.26 Total: 150.85 kcal Total: -81.39 1.60 -79.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885895410.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.816 kcal (2) G-P(sol) polarization free energy of solvation -81.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds