Wall clock time and date at job start Mon Mar 30 2020 03:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 120.00036 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.47016 * 119.99774 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00131 * 3 2 1 7 7 C 1.38798 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00434 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99771 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 180.02562 * 9 7 2 11 11 H 1.09005 * 110.42170 * 178.94726 * 10 9 7 12 12 N 1.47646 * 110.47175 * 301.45154 * 10 9 7 13 13 N 1.36559 * 106.14625 * 118.69773 * 12 10 9 14 14 C 1.33944 * 111.05529 * 359.97438 * 13 12 10 15 15 O 1.21595 * 124.15977 * 180.02562 * 14 13 12 16 16 N 1.34547 * 111.68187 * 0.02562 * 14 13 12 17 17 C 1.46500 * 126.57483 * 180.02562 * 16 14 13 18 18 C 1.53006 * 117.49816 * 8.74063 * 17 16 14 19 19 C 1.53001 * 117.49721 * 300.08359 * 17 16 14 20 20 H 0.97001 * 119.99662 * 179.97438 * 1 2 3 21 21 H 1.00898 * 111.00322 * 357.98052 * 12 10 9 22 22 H 0.96996 * 124.46709 * 180.02562 * 13 12 10 23 23 H 1.09003 * 115.55383 * 154.40849 * 17 16 14 24 24 H 1.09000 * 117.49388 * 0.02562 * 18 17 16 25 25 H 1.08999 * 117.49951 * 145.02090 * 18 17 16 26 26 H 1.08994 * 117.49856 * 214.97942 * 19 17 16 27 27 H 1.09001 * 117.50001 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1041 1.6964 1.2126 6 1 3.1041 1.6965 -1.2124 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0019 10 6 2.5160 -3.8913 -0.0013 11 1 2.1508 -4.9183 0.0167 12 7 3.3764 -3.6699 -1.1806 13 7 4.6061 -3.3287 -0.6947 14 6 4.6069 -3.3127 0.6447 15 8 5.5779 -3.0394 1.3237 16 7 3.4011 -3.6363 1.1463 17 6 3.0385 -3.7182 2.5634 18 6 4.0599 -3.2126 3.5843 19 6 3.8077 -4.7148 3.4329 20 1 -0.4850 -0.8401 -0.0004 21 1 3.0040 -2.9387 -1.7677 22 1 5.3770 -3.1241 -1.2467 23 1 1.9833 -3.5636 2.7884 24 1 5.0014 -2.8187 3.2014 25 1 3.6766 -2.7258 4.4810 26 1 3.2586 -5.2156 4.2301 27 1 4.5832 -5.3098 2.9505 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953067830.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:22 Heat of formation + Delta-G solvation = 28.721769 kcal Electronic energy + Delta-G solvation = -14422.616587 eV Core-core repulsion = 11922.527709 eV Total energy + Delta-G solvation = -2500.088877 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.063 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.59065 -38.52100 -37.76429 -34.84548 -33.82216 -31.01051 -27.17042 -25.51906 -24.76039 -23.29443 -21.28043 -20.69313 -19.73317 -18.17971 -17.32627 -16.93045 -16.44194 -16.13390 -15.75700 -15.33515 -15.15559 -14.68455 -14.13727 -13.99836 -13.07293 -12.86379 -12.57037 -12.55669 -12.06266 -11.55125 -11.46939 -11.26475 -11.16849 -10.65706 -10.05207 -9.19479 -8.98775 -8.85528 -6.37555 0.99370 1.25182 1.43075 1.48997 1.70018 1.82070 2.07234 2.27262 2.90820 2.95783 3.01671 3.32025 3.71566 3.94548 3.95871 4.18896 4.39257 4.72226 4.88376 5.00360 5.20036 5.26212 5.59632 5.61141 6.08508 6.15344 6.64066 6.95978 7.35991 8.48517 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.026242 B = 0.011227 C = 0.010866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.730659 B = 2493.402502 C = 2576.277204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.002 4.002 3 Si 1.118 2.882 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.591 4.591 8 H 0.058 0.942 9 S -0.186 6.186 10 C 0.311 3.689 11 H 0.153 0.847 12 N -0.410 5.410 13 N -0.578 5.578 14 C 0.682 3.318 15 O -0.610 6.610 16 N -0.598 5.598 17 C 0.096 3.904 18 C -0.194 4.194 19 C -0.159 4.159 20 H 0.267 0.733 21 H 0.354 0.646 22 H 0.451 0.549 23 H 0.138 0.862 24 H 0.096 0.904 25 H 0.115 0.885 26 H 0.134 0.866 27 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.108 -7.560 1.430 9.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.208 4.208 3 Si 0.939 3.061 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.739 4.739 8 H 0.076 0.924 9 S 0.039 5.961 10 C 0.007 3.993 11 H 0.170 0.830 12 N -0.140 5.140 13 N -0.334 5.334 14 C 0.380 3.620 15 O -0.490 6.490 16 N -0.335 5.335 17 C -0.008 4.008 18 C -0.232 4.232 19 C -0.198 4.198 20 H 0.079 0.921 21 H 0.176 0.824 22 H 0.299 0.701 23 H 0.155 0.845 24 H 0.115 0.885 25 H 0.133 0.867 26 H 0.152 0.848 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.345 -6.710 1.748 8.182 hybrid contribution 1.374 -0.224 -0.099 1.396 sum 5.719 -6.934 1.649 9.138 Atomic orbital electron populations 1.70939 1.07470 1.30407 1.45023 1.27213 0.96298 1.05282 0.91974 0.82875 0.74150 0.71353 0.77741 1.19926 1.20852 1.19113 1.23563 0.95191 0.92121 1.63037 0.92427 1.84716 1.14322 1.02449 1.94566 1.25168 0.91292 1.01922 0.80968 0.83030 1.64612 0.93240 1.43521 1.12651 1.44447 1.09117 1.74967 1.04857 1.16469 0.83849 0.78575 0.83070 1.90814 1.37331 1.58727 1.62095 1.47473 1.09489 1.70671 1.05915 1.21396 0.98030 1.06820 0.74523 1.23570 1.01279 0.98268 1.00098 1.23431 1.02481 0.91901 1.02000 0.92128 0.82362 0.70134 0.84472 0.88539 0.86663 0.84806 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.07 13.67 21.65 0.30 -51.77 15 2 C 0.00 -0.09 5.49 84.86 0.47 0.37 15 3 Si 1.12 48.77 29.92 68.60 2.05 50.82 15 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 15 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 6 H -0.27 -10.75 7.11 99.48 0.71 -10.04 15 7 C -0.59 -30.68 8.48 67.95 0.58 -30.11 15 8 H 0.06 3.06 6.65 -2.92 -0.02 3.04 15 9 S -0.19 -8.35 20.07 -56.49 -1.13 -9.49 15 10 C 0.31 11.31 4.64 170.27 0.79 12.10 15 11 H 0.15 4.74 8.14 -2.38 -0.02 4.72 15 12 N -0.41 -13.83 8.00 -185.37 -1.48 -15.32 15 13 N -0.58 -19.81 6.82 -185.88 -1.27 -21.08 15 14 C 0.68 27.52 7.74 179.39 1.39 28.91 15 15 O -0.61 -27.37 14.97 -4.02 -0.06 -27.43 15 16 N -0.60 -22.71 2.69 -814.51 -2.19 -24.90 15 17 C 0.10 3.29 6.81 44.99 0.31 3.60 15 18 C -0.19 -6.38 9.84 30.62 0.30 -6.08 15 19 C -0.16 -4.35 10.40 30.62 0.32 -4.03 15 20 H 0.27 15.54 7.12 -92.71 -0.66 14.88 15 21 H 0.35 12.67 7.80 -210.58 -1.64 11.03 15 22 H 0.45 12.78 8.96 -215.53 -1.93 10.85 15 23 H 0.14 4.63 8.14 -2.39 -0.02 4.61 15 24 H 0.10 3.82 5.51 -2.39 -0.01 3.81 15 25 H 0.12 3.24 8.14 -2.39 -0.02 3.22 15 26 H 0.13 2.70 8.14 -2.39 -0.02 2.68 15 27 H 0.08 2.45 8.14 -2.39 -0.02 2.43 15 Total: -1.00 -63.85 247.62 -1.89 -65.74 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: -2.24 Total: 28.66 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 4.15 Total: 4.76 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -4.65 Total: -113.07 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.06 Total: -27.43 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 2.05 Total: 50.82 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.13 Total: -9.49 kcal Total: -63.85 -1.89 -65.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067830.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.459 kcal (2) G-P(sol) polarization free energy of solvation -63.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds