Wall clock time and date at job start Mon Mar 30 2020 03:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86807 * 119.99688 * 2 1 4 4 H 1.48499 * 109.46733 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47204 * 300.00006 * 3 2 1 6 6 H 1.48498 * 109.46930 * 60.00249 * 3 2 1 7 7 C 1.40049 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99754 * 180.02562 * 7 2 1 9 9 C 1.46366 * 120.00040 * 359.97438 * 7 2 1 10 10 O 1.21689 * 120.00479 * 0.02562 * 9 7 2 11 11 N 1.34778 * 119.99983 * 180.02562 * 9 7 2 12 12 C 1.47549 * 125.72155 * 359.68735 * 11 9 7 13 13 C 1.56183 * 105.83317 * 176.75589 * 12 11 9 14 14 H 1.08998 * 117.73259 * 160.30363 * 13 12 11 15 15 C 1.57664 * 98.57688 * 33.00421 * 13 12 11 16 16 C 1.48636 * 125.72097 * 180.02562 * 11 9 7 17 17 H 1.08996 * 113.88757 * 27.78145 * 16 11 9 18 18 C 1.55795 * 106.48757 * 261.61672 * 16 11 9 19 19 S 1.83685 * 102.73795 * 290.03979 * 18 16 11 20 20 O 1.42097 * 109.47164 * 245.38826 * 19 18 16 21 21 H 0.96996 * 120.00296 * 0.02562 * 1 2 3 22 22 H 1.08997 * 110.18046 * 295.85003 * 12 11 9 23 23 H 1.09003 * 110.17738 * 57.66797 * 12 11 9 24 24 H 1.08996 * 111.56998 * 194.08556 * 15 13 12 25 25 H 1.08996 * 111.56880 * 68.76385 * 15 13 12 26 26 H 1.08997 * 110.76004 * 48.35006 * 18 16 11 27 27 H 1.09002 * 110.75576 * 171.73113 * 18 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7006 1.3465 0.0006 5 1 1.8819 2.3965 -1.2124 6 1 1.8819 2.3964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2752 -2.4804 -0.0005 10 8 0.0583 -2.4806 -0.0005 11 7 1.9491 -3.6476 -0.0005 12 6 3.4172 -3.7947 -0.0071 13 6 3.6921 -5.3296 0.0808 14 1 4.6721 -5.6882 -0.2339 15 6 2.4378 -5.8398 -0.7267 16 6 1.3380 -5.0025 -0.0011 17 1 0.3529 -5.0423 -0.4660 18 6 1.3542 -5.4955 1.4767 19 16 3.1415 -5.7820 1.7886 20 8 3.3679 -7.1676 2.0077 21 1 -0.4850 0.8400 -0.0004 22 1 3.8315 -3.3908 -0.9308 23 1 3.8499 -3.2853 0.8540 24 1 2.2818 -6.9099 -0.5907 25 1 2.5080 -5.5791 -1.7827 26 1 0.9638 -4.7275 2.1445 27 1 0.7904 -6.4225 1.5809 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346308594.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:09 Heat of formation + Delta-G solvation = -51.903230 kcal Electronic energy + Delta-G solvation = -14284.046087 eV Core-core repulsion = 11748.168297 eV Total energy + Delta-G solvation = -2535.877791 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.99894 -35.91780 -35.43579 -32.57716 -30.79749 -29.81125 -26.23619 -25.71345 -22.10763 -20.93934 -18.96273 -17.45733 -16.75575 -15.82805 -15.72803 -14.77398 -14.48250 -13.95743 -13.22380 -13.03432 -12.87352 -12.66574 -12.27502 -11.84118 -11.60308 -11.36474 -11.16253 -10.97831 -10.95888 -10.69943 -10.42515 -10.19351 -9.51435 -8.94337 -8.08308 -7.74642 -7.39501 -6.28473 -4.74205 1.90694 2.57483 3.08600 3.17354 3.21304 3.92138 4.02356 4.32147 4.44918 4.54298 4.92379 5.08027 5.22526 5.58781 5.69336 5.79601 5.86876 5.97468 6.13293 6.26628 6.28901 6.42907 7.10643 7.36010 7.96834 8.27933 8.93547 9.34636 10.47006 10.65878 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.047924 B = 0.008134 C = 0.007685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.121026 B = 3441.494054 C = 3642.765930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.073 0.927 9 C 0.571 3.429 10 O -0.572 6.572 11 N -0.647 5.647 12 C 0.145 3.855 13 C -0.396 4.396 14 H 0.138 0.862 15 C -0.141 4.141 16 C 0.150 3.850 17 H 0.108 0.892 18 C -0.424 4.424 19 S 1.201 4.799 20 O -0.868 6.868 21 H 0.269 0.731 22 H 0.066 0.934 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.127 0.873 27 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.837 -4.613 2.048 9.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.574 4.574 8 H 0.091 0.909 9 C 0.378 3.622 10 O -0.454 6.454 11 N -0.388 5.388 12 C 0.020 3.980 13 C -0.515 4.515 14 H 0.156 0.844 15 C -0.180 4.180 16 C 0.044 3.956 17 H 0.126 0.874 18 C -0.564 4.564 19 S 1.401 4.599 20 O -0.864 6.864 21 H 0.080 0.920 22 H 0.084 0.916 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.105 0.895 26 H 0.145 0.855 27 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.476 -4.746 2.961 9.338 hybrid contribution -0.467 -0.487 -1.710 1.839 sum 7.009 -5.233 1.250 8.836 Atomic orbital electron populations 1.70019 1.07139 1.27410 1.34937 1.25743 0.94628 1.00416 0.92550 0.86295 0.80541 0.81582 0.78270 1.18583 1.20228 1.20081 1.20943 0.93764 0.88741 1.53956 0.90870 1.18114 0.86721 0.81090 0.76289 1.90628 1.13871 1.85615 1.55313 1.49467 1.04314 1.04280 1.80721 1.21676 0.84092 0.90003 1.02234 1.29658 1.02954 1.02614 1.16260 0.84430 1.23968 0.93206 0.99101 1.01741 1.22517 0.97765 0.84421 0.90911 0.87428 1.28784 1.16722 1.06629 1.04288 1.71288 0.91633 1.00027 0.96934 1.93021 1.80920 1.33984 1.78438 0.92012 0.91626 0.90745 0.90967 0.89455 0.85481 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.97 11.83 55.55 0.66 -21.32 15 2 C 0.09 2.28 5.50 -17.37 -0.10 2.19 15 3 Si 0.91 18.96 29.56 -169.99 -5.02 13.94 15 4 H -0.26 -5.21 7.11 56.52 0.40 -4.81 15 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 6 H -0.28 -5.65 7.11 56.52 0.40 -5.25 15 7 C -0.54 -14.09 9.07 -35.64 -0.32 -14.42 15 8 H 0.07 1.73 7.15 -52.48 -0.38 1.35 15 9 C 0.57 15.24 7.79 -12.99 -0.10 15.14 15 10 O -0.57 -17.75 15.28 5.20 0.08 -17.67 15 11 N -0.65 -13.46 2.88 -159.80 -0.46 -13.92 15 12 C 0.15 2.32 5.28 -1.76 -0.01 2.31 15 13 C -0.40 -5.44 5.76 -22.48 -0.13 -5.57 15 14 H 0.14 1.59 8.14 -51.93 -0.42 1.16 15 15 C -0.14 -2.19 6.26 -22.52 -0.14 -2.33 15 16 C 0.15 2.75 4.46 -63.59 -0.28 2.47 15 17 H 0.11 2.16 8.03 -51.93 -0.42 1.74 15 18 C -0.42 -6.84 6.97 38.65 0.27 -6.58 15 19 S 1.20 16.78 13.86 -107.50 -1.49 15.29 15 20 O -0.87 -16.47 18.16 -35.23 -0.64 -17.11 15 21 H 0.27 6.99 8.29 -40.82 -0.34 6.65 15 22 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 23 H 0.07 1.04 8.03 -51.93 -0.42 0.63 15 24 H 0.07 1.09 8.12 -51.93 -0.42 0.67 15 25 H 0.09 1.33 8.14 -51.93 -0.42 0.91 15 26 H 0.13 2.12 8.14 -51.93 -0.42 1.69 15 27 H 0.09 1.44 8.14 -51.93 -0.42 1.02 15 LS Contribution 244.30 15.07 3.68 3.68 Total: -1.00 -35.95 244.30 -6.89 -42.84 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -2.88 Total: 1.04 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -0.81 Total: -6.78 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.20 Total: -35.24 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -0.56 Total: -34.77 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.94 kcal Atomic # 16 Polarization: 16.78 SS G_CDS: -1.49 Total: 15.29 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -35.95 -6.89 -42.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346308594.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.060 kcal (2) G-P(sol) polarization free energy of solvation -35.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds