Wall clock time and date at job start Mon Mar 30 2020 03:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86807 * 119.99688 * 2 1 4 4 H 1.48499 * 109.46733 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47204 * 300.00006 * 3 2 1 6 6 H 1.48498 * 109.46930 * 60.00249 * 3 2 1 7 7 C 1.40049 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99754 * 180.02562 * 7 2 1 9 9 C 1.46366 * 120.00040 * 359.97438 * 7 2 1 10 10 O 1.21689 * 120.00479 * 0.02562 * 9 7 2 11 11 N 1.34778 * 119.99983 * 180.02562 * 9 7 2 12 12 C 1.47549 * 125.72155 * 359.68735 * 11 9 7 13 13 C 1.56183 * 105.83317 * 176.75589 * 12 11 9 14 14 H 1.08998 * 117.73259 * 160.30363 * 13 12 11 15 15 C 1.57664 * 98.57688 * 33.00421 * 13 12 11 16 16 C 1.48636 * 125.72097 * 180.02562 * 11 9 7 17 17 H 1.08996 * 113.88757 * 27.78145 * 16 11 9 18 18 C 1.55795 * 106.48757 * 261.61672 * 16 11 9 19 19 S 1.83685 * 102.73795 * 290.03979 * 18 16 11 20 20 O 1.42097 * 109.47164 * 245.38826 * 19 18 16 21 21 H 0.96996 * 120.00296 * 0.02562 * 1 2 3 22 22 H 1.08997 * 110.18046 * 295.85003 * 12 11 9 23 23 H 1.09003 * 110.17738 * 57.66797 * 12 11 9 24 24 H 1.08996 * 111.56998 * 194.08556 * 15 13 12 25 25 H 1.08996 * 111.56880 * 68.76385 * 15 13 12 26 26 H 1.08997 * 110.76004 * 48.35006 * 18 16 11 27 27 H 1.09002 * 110.75576 * 171.73113 * 18 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7006 1.3465 0.0006 5 1 1.8819 2.3965 -1.2124 6 1 1.8819 2.3964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2752 -2.4804 -0.0005 10 8 0.0583 -2.4806 -0.0005 11 7 1.9491 -3.6476 -0.0005 12 6 3.4172 -3.7947 -0.0071 13 6 3.6921 -5.3296 0.0808 14 1 4.6721 -5.6882 -0.2339 15 6 2.4378 -5.8398 -0.7267 16 6 1.3380 -5.0025 -0.0011 17 1 0.3529 -5.0423 -0.4660 18 6 1.3542 -5.4955 1.4767 19 16 3.1415 -5.7820 1.7886 20 8 3.3679 -7.1676 2.0077 21 1 -0.4850 0.8400 -0.0004 22 1 3.8315 -3.3908 -0.9308 23 1 3.8499 -3.2853 0.8540 24 1 2.2818 -6.9099 -0.5907 25 1 2.5080 -5.5791 -1.7827 26 1 0.9638 -4.7275 2.1445 27 1 0.7904 -6.4225 1.5809 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346308594.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:08 Heat of formation + Delta-G solvation = -79.790872 kcal Electronic energy + Delta-G solvation = -14285.255386 eV Core-core repulsion = 11748.168297 eV Total energy + Delta-G solvation = -2537.087090 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.54807 -37.84122 -36.83943 -34.58535 -32.41863 -31.19682 -28.19854 -27.05650 -23.72289 -22.31828 -20.62115 -18.98453 -18.16942 -17.67271 -17.18485 -16.43608 -15.88844 -15.52263 -14.82852 -14.56436 -14.34343 -14.08762 -13.86690 -13.46832 -13.00416 -12.94333 -12.77475 -12.62329 -12.49436 -12.19298 -11.98516 -11.86179 -10.89971 -10.86700 -9.82710 -9.39943 -9.06061 -8.24392 -6.79045 0.69438 1.34494 1.47145 1.48528 1.65926 2.27288 2.50667 2.64082 2.79966 3.27036 3.54373 3.57350 3.88844 3.92957 4.29028 4.54186 4.61562 4.72658 4.73723 4.94407 5.00268 5.08876 5.40213 5.57301 6.05744 6.40467 6.93466 7.49632 8.50092 8.72017 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.047924 B = 0.008134 C = 0.007685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.121026 B = 3441.494054 C = 3642.765930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.029 3.971 3 Si 0.996 3.004 4 H -0.238 1.238 5 H -0.277 1.277 6 H -0.271 1.271 7 C -0.557 4.557 8 H 0.100 0.900 9 C 0.556 3.444 10 O -0.633 6.633 11 N -0.651 5.651 12 C 0.135 3.865 13 C -0.375 4.375 14 H 0.176 0.824 15 C -0.137 4.137 16 C 0.134 3.866 17 H 0.076 0.924 18 C -0.431 4.431 19 S 1.272 4.728 20 O -0.908 6.908 21 H 0.273 0.727 22 H 0.073 0.927 23 H 0.101 0.899 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.117 0.883 27 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.017 -4.359 2.202 12.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.186 4.186 3 Si 0.815 3.185 4 H -0.160 1.160 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.593 4.593 8 H 0.118 0.882 9 C 0.363 3.637 10 O -0.520 6.520 11 N -0.389 5.389 12 C 0.012 3.988 13 C -0.494 4.494 14 H 0.193 0.807 15 C -0.175 4.175 16 C 0.028 3.972 17 H 0.094 0.906 18 C -0.570 4.570 19 S 1.472 4.528 20 O -0.904 6.904 21 H 0.083 0.917 22 H 0.091 0.909 23 H 0.119 0.881 24 H 0.099 0.901 25 H 0.109 0.891 26 H 0.135 0.865 27 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.704 -4.553 3.123 12.044 hybrid contribution -1.463 -0.650 -1.796 2.406 sum 9.241 -5.203 1.327 10.687 Atomic orbital electron populations 1.70207 1.09719 1.28822 1.36735 1.26997 0.95389 1.05024 0.91219 0.84991 0.79907 0.75460 0.78111 1.16041 1.20229 1.19606 1.21486 0.95117 0.88987 1.53726 0.88192 1.18456 0.86272 0.83053 0.75913 1.90578 1.16460 1.87093 1.57829 1.49172 1.06709 1.03742 1.79303 1.21992 0.80890 0.92048 1.03913 1.29708 1.03849 1.00557 1.15257 0.80682 1.23905 0.92801 0.98923 1.01907 1.22654 0.97559 0.84145 0.92825 0.90571 1.28796 1.19489 1.06300 1.02439 1.70976 0.88302 0.97358 0.96150 1.92929 1.80931 1.36745 1.79792 0.91745 0.90866 0.88059 0.90125 0.89083 0.86493 0.88693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.77 11.83 21.84 0.26 -48.51 15 2 C 0.03 1.50 5.50 85.31 0.47 1.97 15 3 Si 1.00 38.18 29.56 68.60 2.03 40.21 15 4 H -0.24 -8.11 7.11 99.48 0.71 -7.40 15 5 H -0.28 -10.53 7.11 99.48 0.71 -9.82 15 6 H -0.27 -10.10 7.11 99.48 0.71 -9.40 15 7 C -0.56 -28.97 9.07 24.83 0.23 -28.75 15 8 H 0.10 4.47 7.15 -2.91 -0.02 4.45 15 9 C 0.56 30.32 7.79 86.36 0.67 31.00 15 10 O -0.63 -41.22 15.28 -4.31 -0.07 -41.28 15 11 N -0.65 -26.88 2.88 -777.70 -2.24 -29.11 15 12 C 0.14 3.91 5.28 87.28 0.46 4.37 15 13 C -0.38 -8.83 5.76 33.35 0.19 -8.64 15 14 H 0.18 3.00 8.14 -2.39 -0.02 2.98 15 15 C -0.14 -3.96 6.26 33.32 0.21 -3.75 15 16 C 0.13 4.96 4.46 46.62 0.21 5.16 15 17 H 0.08 3.26 8.03 -2.39 -0.02 3.24 15 18 C -0.43 -13.84 6.97 72.95 0.51 -13.34 15 19 S 1.27 32.13 13.86 -56.49 -0.78 31.35 15 20 O -0.91 -31.96 18.16 -148.98 -2.71 -34.67 15 21 H 0.27 14.65 8.29 -92.71 -0.77 13.88 15 22 H 0.07 2.08 8.14 -2.39 -0.02 2.06 15 23 H 0.10 2.43 8.03 -2.39 -0.02 2.41 15 24 H 0.08 2.25 8.12 -2.39 -0.02 2.23 15 25 H 0.09 2.59 8.14 -2.39 -0.02 2.57 15 26 H 0.12 3.99 8.14 -2.39 -0.02 3.97 15 27 H 0.09 2.97 8.14 -2.39 -0.02 2.95 15 Total: -1.00 -80.48 244.30 0.62 -79.86 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 1.18 Total: 14.12 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 2.94 Total: -11.96 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -1.98 Total: -77.63 kcal Atomic # 8 Polarization: -73.18 SS G_CDS: -2.77 Total: -75.95 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Atomic # 16 Polarization: 32.13 SS G_CDS: -0.78 Total: 31.35 kcal Total: -80.48 0.62 -79.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346308594.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.069 kcal (2) G-P(sol) polarization free energy of solvation -80.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds