Wall clock time and date at job start Mon Mar 30 2020 03:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35169 * 125.96923 * 2 1 4 4 C 1.35223 * 107.88241 * 180.02562 * 3 2 1 5 5 Cl 1.73599 * 126.06528 * 179.97438 * 4 3 2 6 6 C 1.40588 * 107.86330 * 0.24645 * 4 3 2 7 7 N 1.39689 * 125.97714 * 179.72511 * 6 4 3 8 8 C 1.34779 * 119.99219 * 179.97438 * 7 6 4 9 9 O 1.21760 * 120.00479 * 0.02562 * 8 7 6 10 10 C 1.46118 * 119.99409 * 179.97438 * 8 7 6 11 11 H 1.07994 * 120.00149 * 0.02562 * 10 8 7 12 12 C 1.40130 * 119.99946 * 180.02562 * 10 8 7 13 13 N 1.30632 * 119.99687 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 120.00361 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47123 * 89.99608 * 14 12 10 16 16 H 1.48500 * 109.47384 * 210.00323 * 14 12 10 17 17 H 1.48504 * 109.46726 * 329.99612 * 14 12 10 18 18 N 1.31420 * 108.03373 * 359.58801 * 6 4 3 19 19 H 1.08999 * 109.47705 * 89.99476 * 1 2 3 20 20 H 1.09000 * 109.47154 * 209.99860 * 1 2 3 21 21 H 1.09001 * 109.46499 * 329.99421 * 1 2 3 22 22 H 1.07998 * 126.06166 * 0.04388 * 3 2 1 23 23 H 0.96992 * 120.00380 * 0.02562 * 7 6 4 24 24 H 0.97003 * 120.00227 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0940 0.0000 4 6 3.5444 0.6742 -0.0006 5 17 4.9515 1.6908 -0.0014 6 6 3.5389 -0.7317 -0.0067 7 7 4.6661 -1.5567 -0.0146 8 6 4.5203 -2.8966 -0.0194 9 8 3.4063 -3.3879 -0.0173 10 6 5.6994 -3.7596 -0.0282 11 1 6.6875 -3.3238 -0.0305 12 6 5.5480 -5.1527 -0.0337 13 7 4.3527 -5.6797 -0.0305 14 14 7.0552 -6.2561 -0.0443 15 1 7.4601 -6.5545 1.3529 16 1 6.7358 -7.5237 -0.7488 17 1 8.1681 -5.5670 -0.7457 18 7 2.2877 -1.1337 -0.0007 19 1 -0.3634 0.0001 -1.0276 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3632 0.8900 0.5139 22 1 1.9258 2.1213 0.0007 23 1 5.5536 -1.1654 -0.0159 24 1 4.2478 -6.6441 -0.0347 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350953979.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:35 Heat of formation + Delta-G solvation = 41.516412 kcal Electronic energy + Delta-G solvation = -13415.763101 eV Core-core repulsion = 10778.352240 eV Total energy + Delta-G solvation = -2637.410861 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.66503 -37.32470 -36.06281 -33.75635 -32.44143 -31.38028 -29.37613 -26.83220 -25.43432 -21.65022 -20.79307 -18.96930 -17.44253 -16.71607 -15.38693 -15.22022 -15.00877 -14.12061 -13.99970 -13.29227 -13.08453 -12.54125 -12.32460 -12.26872 -11.27784 -11.26089 -11.05567 -10.86984 -10.56471 -10.27270 -9.79421 -9.75118 -8.86329 -8.16399 -7.67446 -7.24631 -6.26945 -4.73765 2.21242 2.37128 3.10843 3.17836 3.21375 3.25039 3.31620 4.04748 4.51407 4.58608 4.88445 5.05987 5.35126 5.57503 5.75532 5.77751 5.92415 6.50018 7.29599 7.36142 7.58352 8.01018 8.14139 8.37129 8.92652 9.33779 10.49153 10.66313 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.034998 B = 0.007677 C = 0.006318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.860421 B = 3646.204592 C = 4430.916384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.383 5.383 3 C 0.075 3.925 4 C -0.218 4.218 5 Cl -0.057 7.057 6 C 0.338 3.662 7 N -0.657 5.657 8 C 0.537 3.463 9 O -0.530 6.530 10 C -0.537 4.537 11 H 0.073 0.927 12 C 0.086 3.914 13 N -0.761 5.761 14 Si 0.914 3.086 15 H -0.271 1.271 16 H -0.278 1.278 17 H -0.263 1.263 18 N -0.268 5.268 19 H 0.070 0.930 20 H 0.090 0.910 21 H 0.081 0.919 22 H 0.175 0.825 23 H 0.402 0.598 24 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.682 12.396 0.106 12.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.165 5.165 3 C -0.074 4.074 4 C -0.260 4.260 5 Cl -0.029 7.029 6 C 0.079 3.921 7 N -0.308 5.308 8 C 0.342 3.658 9 O -0.407 6.407 10 C -0.574 4.574 11 H 0.091 0.909 12 C -0.135 4.135 13 N -0.389 5.389 14 Si 0.738 3.262 15 H -0.196 1.196 16 H -0.204 1.204 17 H -0.187 1.187 18 N -0.099 5.099 19 H 0.089 0.911 20 H 0.108 0.892 21 H 0.100 0.900 22 H 0.192 0.808 23 H 0.237 0.763 24 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.396 10.827 0.108 11.686 hybrid contribution 1.809 0.609 -0.014 1.909 sum -2.587 11.436 0.093 11.726 Atomic orbital electron populations 1.21725 0.74081 1.04106 1.03005 1.48358 1.06448 1.03798 1.57932 1.21903 0.89474 0.93865 1.02190 1.20438 0.88357 0.89817 1.27396 1.98271 1.39201 1.67346 1.98103 1.19546 0.89280 0.87342 0.95969 1.43997 1.04124 1.06920 1.75803 1.18546 0.91306 0.78265 0.77708 1.90728 1.26536 1.71637 1.51779 1.20769 0.91947 0.90518 1.54137 0.90893 1.25733 0.96715 0.98433 0.92597 1.69998 1.22638 1.12178 1.34103 0.86266 0.81721 0.79277 0.78928 1.19613 1.20363 1.18732 1.78623 0.98616 1.02311 1.30375 0.91099 0.89166 0.89996 0.80800 0.76349 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.31 11.47 59.85 0.69 1.99 14 2 N -0.38 -6.67 4.02 -68.13 -0.27 -6.94 14 3 C 0.07 1.14 11.46 -17.16 -0.20 0.94 14 4 C -0.22 -3.96 6.67 -39.77 -0.27 -4.23 14 5 Cl -0.06 -0.87 29.17 -51.86 -1.51 -2.38 14 6 C 0.34 7.77 7.81 -154.62 -1.21 6.56 14 7 N -0.66 -16.04 5.43 -12.49 -0.07 -16.11 14 8 C 0.54 15.75 7.70 -13.10 -0.10 15.65 14 9 O -0.53 -17.57 13.72 5.14 0.07 -17.50 14 10 C -0.54 -15.17 9.53 -35.71 -0.34 -15.51 14 11 H 0.07 1.86 7.85 -52.49 -0.41 1.45 14 12 C 0.09 2.39 5.50 -17.35 -0.10 2.29 14 13 N -0.76 -22.76 11.82 55.55 0.66 -22.10 14 14 Si 0.91 19.98 29.56 -169.99 -5.02 14.95 14 15 H -0.27 -5.79 7.11 56.52 0.40 -5.38 14 16 H -0.28 -5.96 7.11 56.52 0.40 -5.56 14 17 H -0.26 -5.55 7.11 56.52 0.40 -5.15 14 18 N -0.27 -6.42 10.79 31.41 0.34 -6.08 14 19 H 0.07 0.72 8.14 -51.93 -0.42 0.30 14 20 H 0.09 1.11 8.14 -51.93 -0.42 0.68 14 21 H 0.08 0.62 8.14 -51.93 -0.42 0.20 14 22 H 0.17 1.78 8.06 -52.49 -0.42 1.36 14 23 H 0.40 8.51 8.66 -40.82 -0.35 8.15 14 24 H 0.27 7.32 8.29 -40.82 -0.34 6.99 14 LS Contribution 243.25 15.07 3.67 3.67 Total: -1.00 -36.51 243.25 -5.26 -41.76 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -1.59 Total: 3.04 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -1.52 Total: 7.70 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.65 Total: -51.23 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: 0.07 Total: -17.50 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.51 Total: -2.38 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -36.51 -5.26 -41.76 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350953979.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.279 kcal (2) G-P(sol) polarization free energy of solvation -36.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds