Wall clock time and date at job start Mon Mar 30 2020 03:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35169 * 125.96923 * 2 1 4 4 C 1.35223 * 107.88241 * 180.02562 * 3 2 1 5 5 Cl 1.73599 * 126.06528 * 179.97438 * 4 3 2 6 6 C 1.40588 * 107.86330 * 0.24645 * 4 3 2 7 7 N 1.39689 * 125.97714 * 179.72511 * 6 4 3 8 8 C 1.34779 * 119.99219 * 179.97438 * 7 6 4 9 9 O 1.21760 * 120.00479 * 0.02562 * 8 7 6 10 10 C 1.46118 * 119.99409 * 179.97438 * 8 7 6 11 11 H 1.07994 * 120.00149 * 0.02562 * 10 8 7 12 12 C 1.40130 * 119.99946 * 180.02562 * 10 8 7 13 13 N 1.30632 * 119.99687 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 120.00361 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47123 * 89.99608 * 14 12 10 16 16 H 1.48500 * 109.47384 * 210.00323 * 14 12 10 17 17 H 1.48504 * 109.46726 * 329.99612 * 14 12 10 18 18 N 1.31420 * 108.03373 * 359.58801 * 6 4 3 19 19 H 1.08999 * 109.47705 * 89.99476 * 1 2 3 20 20 H 1.09000 * 109.47154 * 209.99860 * 1 2 3 21 21 H 1.09001 * 109.46499 * 329.99421 * 1 2 3 22 22 H 1.07998 * 126.06166 * 0.04388 * 3 2 1 23 23 H 0.96992 * 120.00380 * 0.02562 * 7 6 4 24 24 H 0.97003 * 120.00227 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0940 0.0000 4 6 3.5444 0.6742 -0.0006 5 17 4.9515 1.6908 -0.0014 6 6 3.5389 -0.7317 -0.0067 7 7 4.6661 -1.5567 -0.0146 8 6 4.5203 -2.8966 -0.0194 9 8 3.4063 -3.3879 -0.0173 10 6 5.6994 -3.7596 -0.0282 11 1 6.6875 -3.3238 -0.0305 12 6 5.5480 -5.1527 -0.0337 13 7 4.3527 -5.6797 -0.0305 14 14 7.0552 -6.2561 -0.0443 15 1 7.4601 -6.5545 1.3529 16 1 6.7358 -7.5237 -0.7488 17 1 8.1681 -5.5670 -0.7457 18 7 2.2877 -1.1337 -0.0007 19 1 -0.3634 0.0001 -1.0276 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3632 0.8900 0.5139 22 1 1.9258 2.1213 0.0007 23 1 5.5536 -1.1654 -0.0159 24 1 4.2478 -6.6441 -0.0347 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350953979.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:35 Heat of formation + Delta-G solvation = 13.864893 kcal Electronic energy + Delta-G solvation = -13416.962161 eV Core-core repulsion = 10778.352240 eV Total energy + Delta-G solvation = -2638.609921 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.13150 -39.36723 -37.33498 -35.58443 -34.54303 -32.91485 -30.82913 -28.79204 -26.88508 -23.41545 -22.25060 -20.75484 -19.30960 -18.25088 -17.45467 -16.61884 -16.57478 -15.92120 -15.27375 -14.95272 -14.53168 -14.46759 -13.79214 -13.35213 -13.18974 -12.81968 -12.71738 -12.51185 -12.17051 -12.00099 -11.45130 -11.27982 -10.92032 -9.89584 -9.67464 -8.89866 -8.35616 -6.94143 0.91704 1.11611 1.39756 1.40792 1.58535 1.66951 1.86089 2.24544 2.52590 2.89570 3.61572 3.68856 4.04868 4.48555 4.51283 4.61093 4.74340 4.92603 5.26593 5.68599 6.04137 6.12309 6.24478 6.66720 6.79260 7.41442 8.37884 8.59012 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.034998 B = 0.007677 C = 0.006318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.860421 B = 3646.204592 C = 4430.916384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.379 5.379 3 C 0.107 3.893 4 C -0.237 4.237 5 Cl -0.035 7.035 6 C 0.305 3.695 7 N -0.656 5.656 8 C 0.522 3.478 9 O -0.582 6.582 10 C -0.564 4.564 11 H 0.095 0.905 12 C 0.028 3.972 13 N -0.815 5.815 14 Si 1.006 2.994 15 H -0.260 1.260 16 H -0.272 1.272 17 H -0.246 1.246 18 N -0.338 5.338 19 H 0.087 0.913 20 H 0.075 0.925 21 H 0.134 0.866 22 H 0.236 0.764 23 H 0.414 0.586 24 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.012 14.146 0.106 14.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.162 5.162 3 C -0.043 4.043 4 C -0.278 4.278 5 Cl -0.007 7.007 6 C 0.047 3.953 7 N -0.307 5.307 8 C 0.328 3.672 9 O -0.464 6.464 10 C -0.600 4.600 11 H 0.113 0.887 12 C -0.188 4.188 13 N -0.445 5.445 14 Si 0.824 3.176 15 H -0.185 1.185 16 H -0.197 1.197 17 H -0.169 1.169 18 N -0.169 5.169 19 H 0.106 0.894 20 H 0.093 0.907 21 H 0.152 0.848 22 H 0.252 0.748 23 H 0.250 0.750 24 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.727 12.643 0.107 13.182 hybrid contribution 1.464 0.239 -0.014 1.483 sum -2.264 12.882 0.093 13.080 Atomic orbital electron populations 1.22220 0.71012 1.05974 1.04735 1.48743 1.08046 1.02846 1.56534 1.22777 0.87884 0.95488 0.98146 1.20546 0.90492 0.88126 1.28666 1.98270 1.38227 1.66064 1.98133 1.19798 0.88671 0.89290 0.97564 1.43441 1.05528 1.05986 1.75791 1.18948 0.91054 0.79968 0.77274 1.90672 1.28208 1.73355 1.54128 1.21345 0.92667 0.91553 1.54446 0.88690 1.27067 1.00660 1.00040 0.91062 1.70171 1.26030 1.13012 1.35244 0.84901 0.76644 0.76491 0.79546 1.18452 1.19673 1.16922 1.78420 1.00150 1.06623 1.31743 0.89425 0.90651 0.84769 0.74775 0.74975 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.08 11.47 127.77 1.47 3.54 14 2 N -0.38 -12.60 4.02 -369.45 -1.48 -14.08 14 3 C 0.11 2.91 11.46 83.48 0.96 3.86 14 4 C -0.24 -8.27 6.67 22.15 0.15 -8.12 14 5 Cl -0.03 -1.00 29.17 -2.72 -0.08 -1.08 14 6 C 0.30 14.26 7.81 133.47 1.04 15.31 14 7 N -0.66 -33.09 5.43 -311.62 -1.69 -34.79 14 8 C 0.52 31.96 7.70 86.29 0.66 32.62 14 9 O -0.58 -40.72 13.72 -4.54 -0.06 -40.79 14 10 C -0.56 -32.56 9.53 24.78 0.24 -32.32 14 11 H 0.10 4.84 7.85 -2.91 -0.02 4.82 14 12 C 0.03 1.55 5.50 85.33 0.47 2.02 14 13 N -0.82 -50.50 11.82 21.85 0.26 -50.25 14 14 Si 1.01 40.98 29.56 68.60 2.03 43.01 14 15 H -0.26 -10.07 7.11 99.48 0.71 -9.36 14 16 H -0.27 -10.68 7.11 99.48 0.71 -9.97 14 17 H -0.25 -9.26 7.11 99.48 0.71 -8.55 14 18 N -0.34 -16.59 10.79 -54.53 -0.59 -17.18 14 19 H 0.09 1.56 8.14 -2.39 -0.02 1.54 14 20 H 0.07 1.81 8.14 -2.39 -0.02 1.79 14 21 H 0.13 1.40 8.14 -2.39 -0.02 1.38 14 22 H 0.24 3.34 8.06 -2.91 -0.02 3.31 14 23 H 0.41 17.94 8.66 -92.71 -0.80 17.14 14 24 H 0.28 15.48 8.29 -92.71 -0.77 14.71 14 Total: -1.00 -85.25 243.25 3.81 -81.44 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.44 Total: 16.81 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 4.98 Total: 16.91 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -3.51 Total: -116.29 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: -0.06 Total: -40.79 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.08 Total: -1.08 kcal Total: -85.25 3.81 -81.44 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350953979.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.304 kcal (2) G-P(sol) polarization free energy of solvation -85.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds