Wall clock time and date at job start Mon Mar 30 2020 03:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42906 * 113.99450 * 2 1 4 4 C 1.50701 * 109.46773 * 180.02562 * 3 2 1 5 5 N 1.29028 * 124.91855 * 90.02634 * 4 3 2 6 6 C 1.31771 * 117.12878 * 180.02562 * 5 4 3 7 7 C 1.50700 * 122.75189 * 180.27169 * 6 5 4 8 8 H 1.09005 * 109.47219 * 184.70498 * 7 6 5 9 9 O 1.42901 * 109.47279 * 64.70301 * 7 6 5 10 10 C 1.50701 * 109.47098 * 304.70593 * 7 6 5 11 11 H 1.08008 * 119.99495 * 359.97438 * 10 7 6 12 12 C 1.37878 * 120.00319 * 180.02562 * 10 7 6 13 13 N 1.31511 * 119.99883 * 359.97438 * 12 10 7 14 14 Si 1.86798 * 120.00155 * 180.02562 * 12 10 7 15 15 H 1.48505 * 109.47005 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47299 * 119.99756 * 14 12 10 17 17 H 1.48493 * 109.47131 * 239.99934 * 14 12 10 18 18 C 1.33644 * 114.50041 * 359.97438 * 6 5 4 19 19 S 1.70979 * 124.91569 * 270.02942 * 4 3 2 20 20 H 1.09002 * 109.46661 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.46868 * 299.99573 * 1 2 3 22 22 H 1.09001 * 109.47068 * 60.00113 * 1 2 3 23 23 H 1.08998 * 109.47198 * 60.00691 * 3 2 1 24 24 H 1.09000 * 109.47397 * 299.99803 * 3 2 1 25 25 H 0.96697 * 113.99966 * 300.00367 * 9 7 6 26 26 H 0.97004 * 119.99996 * 179.97438 * 13 12 10 27 27 H 1.08001 * 126.03803 * 180.02562 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2484 1.1290 -1.0589 6 6 5.5499 1.0253 -0.8809 7 6 6.5264 0.9547 -2.0265 8 1 7.5312 0.7887 -1.6378 9 8 6.4948 2.1831 -2.7559 10 6 6.1472 -0.1820 -2.9404 11 1 5.2854 -0.7924 -2.7140 12 6 6.9009 -0.4433 -4.0650 13 7 7.9505 0.2997 -4.3404 14 14 6.4304 -1.8518 -5.1982 15 1 5.2187 -2.5286 -4.6699 16 1 6.1493 -1.3216 -6.5565 17 1 7.5495 -2.8254 -5.2687 18 6 5.9334 0.9943 0.3990 19 16 4.4886 1.1084 1.4010 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.6886 1.8464 0.8900 24 1 1.6886 1.8465 -0.8900 25 1 5.6293 2.3954 -3.1313 26 1 8.4810 0.1156 -5.1314 27 1 6.9495 0.9136 0.7560 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535723006.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:03 Heat of formation + Delta-G solvation = -74.722419 kcal Electronic energy + Delta-G solvation = -13622.889279 eV Core-core repulsion = 11086.021974 eV Total energy + Delta-G solvation = -2536.867305 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.91538 -38.80996 -37.20056 -34.30106 -32.62322 -29.48813 -28.70707 -26.88842 -25.43526 -23.23642 -20.78408 -19.13511 -18.74830 -17.54482 -16.92911 -16.70386 -16.61738 -16.37108 -15.36581 -15.07815 -14.73092 -14.55442 -13.68913 -13.35465 -13.09965 -13.03114 -12.88720 -12.69432 -12.33847 -12.11858 -11.38934 -10.79276 -10.74068 -10.60622 -10.35965 -10.25519 -9.65075 -8.17114 -6.40660 -0.27164 0.47143 0.75434 1.37072 1.38043 1.51552 1.83002 2.39282 2.82164 3.08968 3.41792 3.95861 4.22575 4.30839 4.35096 4.41317 4.53875 4.58923 4.62880 4.87457 5.13671 5.47655 5.65540 6.00075 6.11899 6.65380 6.95638 7.23604 7.40433 8.87528 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.026782 B = 0.008295 C = 0.006890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.222640 B = 3374.532195 C = 4062.930134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.145 3.855 4 C 0.014 3.986 5 N -0.469 5.469 6 C 0.043 3.957 7 C 0.295 3.705 8 H 0.051 0.949 9 O -0.570 6.570 10 C -0.565 4.565 11 H 0.045 0.955 12 C 0.029 3.971 13 N -0.897 5.897 14 Si 0.961 3.039 15 H -0.274 1.274 16 H -0.275 1.275 17 H -0.272 1.272 18 C -0.265 4.265 19 S 0.179 5.821 20 H 0.096 0.904 21 H 0.067 0.933 22 H 0.051 0.949 23 H 0.107 0.893 24 H 0.081 0.919 25 H 0.358 0.642 26 H 0.265 0.735 27 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.668 1.710 11.727 17.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C 0.065 3.935 4 C -0.264 4.264 5 N -0.187 5.187 6 C -0.089 4.089 7 C 0.234 3.766 8 H 0.069 0.931 9 O -0.374 6.374 10 C -0.603 4.603 11 H 0.063 0.937 12 C -0.173 4.173 13 N -0.535 5.535 14 Si 0.786 3.214 15 H -0.199 1.199 16 H -0.200 1.200 17 H -0.197 1.197 18 C -0.404 4.404 19 S 0.433 5.567 20 H 0.114 0.886 21 H 0.086 0.914 22 H 0.070 0.930 23 H 0.125 0.875 24 H 0.099 0.901 25 H 0.203 0.797 26 H 0.074 0.926 27 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -12.251 1.632 12.375 17.490 hybrid contribution 0.051 -0.633 -1.695 1.810 sum -12.201 0.999 10.680 16.246 Atomic orbital electron populations 1.23010 0.78179 1.04166 1.01627 1.87940 1.22467 1.27308 1.95760 1.20925 0.82891 0.85814 1.03824 1.27235 1.01738 1.05607 0.91802 1.65973 1.05259 1.14479 1.32966 1.21545 0.90849 1.00099 0.96402 1.17909 0.90708 0.83285 0.84650 0.93092 1.86475 1.35962 1.42206 1.72707 1.21713 1.12887 1.15939 1.09771 0.93690 1.25823 0.94240 0.98345 0.98901 1.70182 1.17141 1.39250 1.26879 0.85483 0.78279 0.79081 0.78562 1.19886 1.19994 1.19701 1.27232 1.04893 1.12545 0.95690 1.83001 0.96157 1.67081 1.10426 0.88578 0.91449 0.93050 0.87523 0.90097 0.79709 0.92642 0.79322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.70 15 2 O -0.42 -11.75 10.69 -148.98 -1.59 -13.34 15 3 C 0.15 3.77 6.51 71.24 0.46 4.24 15 4 C 0.01 0.49 7.02 88.52 0.62 1.11 15 5 N -0.47 -20.80 10.39 -179.40 -1.86 -22.67 15 6 C 0.04 1.98 5.61 41.52 0.23 2.22 15 7 C 0.29 16.15 3.25 29.10 0.09 16.25 15 8 H 0.05 2.95 8.03 -2.38 -0.02 2.93 15 9 O -0.57 -31.81 12.72 -148.98 -1.90 -33.71 15 10 C -0.56 -33.31 8.64 25.60 0.22 -33.09 15 11 H 0.04 2.73 7.74 -2.91 -0.02 2.71 15 12 C 0.03 1.71 5.40 84.66 0.46 2.16 15 13 N -0.90 -54.43 12.84 21.45 0.28 -54.15 15 14 Si 0.96 45.56 29.54 68.60 2.03 47.59 15 15 H -0.27 -12.97 7.11 99.48 0.71 -12.26 15 16 H -0.27 -12.59 7.11 99.48 0.71 -11.88 15 17 H -0.27 -12.30 7.11 99.48 0.71 -11.60 15 18 C -0.26 -10.00 11.07 66.78 0.74 -9.26 15 19 S 0.18 5.24 23.18 -56.49 -1.31 3.93 15 20 H 0.10 1.49 8.14 -2.39 -0.02 1.47 15 21 H 0.07 0.83 8.14 -2.39 -0.02 0.81 15 22 H 0.05 0.82 8.14 -2.39 -0.02 0.80 15 23 H 0.11 1.88 8.14 -2.39 -0.02 1.86 15 24 H 0.08 2.04 8.14 -2.39 -0.02 2.02 15 25 H 0.36 18.64 9.03 -74.06 -0.67 17.97 15 26 H 0.26 15.01 8.31 -92.71 -0.77 14.24 15 27 H 0.19 6.25 8.06 -2.91 -0.02 6.22 15 Total: -1.00 -71.96 261.07 0.24 -71.72 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.52 Total: 15.30 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 4.08 Total: -14.67 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -1.59 Total: -76.82 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -3.49 Total: -47.05 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Atomic # 16 Polarization: 5.24 SS G_CDS: -1.31 Total: 3.93 kcal Total: -71.96 0.24 -71.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535723006.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.002 kcal (2) G-P(sol) polarization free energy of solvation -71.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds