Wall clock time and date at job start Mon Mar 30 2020 03:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00092 * 2 1 4 4 C 1.50699 * 109.47387 * 180.02562 * 3 2 1 5 5 N 1.29025 * 124.91996 * 89.99784 * 4 3 2 6 6 C 1.31776 * 117.12440 * 180.02562 * 5 4 3 7 7 C 1.50698 * 122.74670 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47607 * 65.02833 * 7 6 5 9 9 O 1.42902 * 109.47022 * 185.02092 * 7 6 5 10 10 C 1.50702 * 109.47465 * 305.02038 * 7 6 5 11 11 H 1.08002 * 119.99441 * 0.02562 * 10 7 6 12 12 C 1.37871 * 120.00075 * 180.02562 * 10 7 6 13 13 N 1.31514 * 120.00481 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 119.99886 * 179.73007 * 12 10 7 15 15 H 1.48502 * 109.46964 * 270.27509 * 14 12 10 16 16 H 1.48505 * 109.47036 * 30.26897 * 14 12 10 17 17 H 1.48490 * 109.47395 * 150.27411 * 14 12 10 18 18 C 1.33644 * 114.50417 * 0.23066 * 6 5 4 19 19 S 1.70982 * 124.91164 * 270.00212 * 4 3 2 20 20 H 1.08998 * 109.47161 * 300.00119 * 1 2 3 21 21 H 1.09002 * 109.46770 * 60.00378 * 1 2 3 22 22 H 1.09005 * 109.47147 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46913 * 59.99821 * 3 2 1 24 24 H 1.09006 * 109.47071 * 300.00250 * 3 2 1 25 25 H 0.96704 * 113.99972 * 60.00582 * 9 7 6 26 26 H 0.97005 * 119.99656 * 359.72741 * 13 12 10 27 27 H 1.08000 * 126.03900 * 179.77097 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2484 1.1283 -1.0589 6 6 5.5499 1.0247 -0.8807 7 6 6.5259 0.9470 -2.0263 8 1 6.5064 1.8830 -2.5845 9 8 7.8421 0.7239 -1.5164 10 6 6.1411 -0.1897 -2.9379 11 1 5.2759 -0.7950 -2.7106 12 6 6.8933 -0.4569 -4.0620 13 7 7.9465 0.2804 -4.3391 14 14 6.4207 -1.8706 -5.1878 15 1 7.0989 -3.1118 -4.7353 16 1 4.9493 -2.0669 -5.1450 17 1 6.8380 -1.5572 -6.5780 18 6 5.9331 0.9889 0.3991 19 16 4.4886 1.1089 1.4011 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.6886 1.8463 0.8900 24 1 1.6886 1.8464 -0.8900 25 1 7.9336 -0.0934 -1.0077 26 1 8.1917 1.0148 -3.7546 27 1 6.9488 0.9036 0.7562 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535723007.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:05 Heat of formation + Delta-G solvation = -80.598736 kcal Electronic energy + Delta-G solvation = -13644.146449 eV Core-core repulsion = 11107.024327 eV Total energy + Delta-G solvation = -2537.122121 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.04204 -38.89306 -37.70824 -34.39536 -32.48409 -29.23349 -28.82202 -26.88908 -25.41387 -23.31789 -20.79373 -19.63026 -18.98279 -17.60153 -17.38042 -16.72476 -16.52789 -15.80393 -15.76880 -15.17268 -14.76129 -14.57681 -14.04631 -13.68484 -13.14030 -12.92126 -12.65363 -12.37770 -12.24579 -11.96183 -11.67114 -10.79953 -10.72166 -10.63855 -10.46312 -10.32524 -9.63733 -8.64678 -6.48647 -0.34299 0.40600 0.68343 1.49947 1.58774 1.74914 1.79062 2.53764 2.74776 3.09063 3.34547 3.80190 3.96923 4.24815 4.26957 4.35473 4.49733 4.51942 4.57934 4.85134 5.07022 5.20399 5.75297 6.07808 6.09101 6.52246 6.78873 7.07063 7.41955 8.72240 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.026459 B = 0.008474 C = 0.006725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.003239 B = 3303.566075 C = 4162.501608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.144 3.856 4 C 0.015 3.985 5 N -0.477 5.477 6 C 0.044 3.956 7 C 0.280 3.720 8 H 0.035 0.965 9 O -0.576 6.576 10 C -0.634 4.634 11 H 0.038 0.962 12 C -0.013 4.013 13 N -0.916 5.916 14 Si 1.119 2.881 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.277 1.277 18 C -0.262 4.262 19 S 0.188 5.812 20 H 0.068 0.932 21 H 0.050 0.950 22 H 0.097 0.903 23 H 0.109 0.891 24 H 0.079 0.921 25 H 0.369 0.631 26 H 0.268 0.732 27 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.584 0.979 12.930 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C 0.065 3.935 4 C -0.263 4.263 5 N -0.195 5.195 6 C -0.088 4.088 7 C 0.220 3.780 8 H 0.052 0.948 9 O -0.382 6.382 10 C -0.672 4.672 11 H 0.056 0.944 12 C -0.215 4.215 13 N -0.552 5.552 14 Si 0.940 3.060 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.203 1.203 18 C -0.401 4.401 19 S 0.441 5.559 20 H 0.086 0.914 21 H 0.069 0.931 22 H 0.116 0.884 23 H 0.127 0.873 24 H 0.097 0.903 25 H 0.216 0.784 26 H 0.079 0.921 27 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -12.398 0.660 11.855 17.167 hybrid contribution 0.102 0.627 0.676 0.927 sum -12.296 1.287 12.531 17.603 Atomic orbital electron populations 1.23022 0.78077 1.04262 1.01644 1.87935 1.22561 1.27184 1.95760 1.20935 0.82840 0.85921 1.03833 1.27259 1.01844 1.05447 0.91766 1.65921 1.05433 1.14845 1.33294 1.21293 0.90708 1.00720 0.96063 1.17738 0.77682 0.95897 0.86698 0.94758 1.86453 1.32018 1.45717 1.73970 1.22480 1.15134 1.17787 1.11840 0.94401 1.27274 0.92933 1.02919 0.98346 1.70761 1.25358 1.18700 1.40394 0.82922 0.75737 0.72805 0.74516 1.19365 1.20636 1.20271 1.27056 1.04959 1.12636 0.95406 1.82999 0.95854 1.66910 1.10087 0.91357 0.93107 0.88444 0.87286 0.90312 0.78410 0.92106 0.78995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.70 15 2 O -0.42 -11.86 10.69 -148.98 -1.59 -13.45 15 3 C 0.14 3.83 6.51 71.24 0.46 4.29 15 4 C 0.01 0.52 7.02 88.52 0.62 1.14 15 5 N -0.48 -21.83 10.38 -179.40 -1.86 -23.70 15 6 C 0.04 2.04 6.00 41.52 0.25 2.29 15 7 C 0.28 15.29 2.97 29.10 0.09 15.38 15 8 H 0.03 2.09 8.00 -2.39 -0.02 2.07 15 9 O -0.58 -29.37 11.19 -148.98 -1.67 -31.03 15 10 C -0.63 -37.79 8.64 25.60 0.22 -37.57 15 11 H 0.04 2.34 7.73 -2.91 -0.02 2.31 15 12 C -0.01 -0.75 5.40 84.65 0.46 -0.29 15 13 N -0.92 -57.48 13.52 21.45 0.29 -57.19 15 14 Si 1.12 52.31 29.90 68.60 2.05 54.36 15 15 H -0.27 -11.67 7.11 99.48 0.71 -10.96 15 16 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 17 H -0.28 -12.63 7.11 99.48 0.71 -11.93 15 18 C -0.26 -9.73 10.39 66.78 0.69 -9.04 15 19 S 0.19 5.43 23.18 -56.49 -1.31 4.12 15 20 H 0.07 0.84 8.14 -2.39 -0.02 0.82 15 21 H 0.05 0.83 8.14 -2.39 -0.02 0.81 15 22 H 0.10 1.51 8.14 -2.38 -0.02 1.49 15 23 H 0.11 1.93 8.14 -2.39 -0.02 1.91 15 24 H 0.08 2.05 8.14 -2.38 -0.02 2.04 15 25 H 0.37 16.50 8.54 -74.05 -0.63 15.87 15 26 H 0.27 17.24 6.48 -92.70 -0.60 16.64 15 27 H 0.19 6.26 7.42 -2.91 -0.02 6.24 15 Total: -1.00 -74.31 257.02 0.68 -73.63 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.73 Total: 15.36 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: 4.04 Total: -22.10 kcal Atomic # 7 Polarization: -79.32 SS G_CDS: -1.57 Total: -80.89 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -3.26 Total: -44.48 kcal Atomic # 14 Polarization: 52.31 SS G_CDS: 2.05 Total: 54.36 kcal Atomic # 16 Polarization: 5.43 SS G_CDS: -1.31 Total: 4.12 kcal Total: -74.31 0.68 -73.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535723007.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.969 kcal (2) G-P(sol) polarization free energy of solvation -74.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds