Wall clock time and date at job start Mon Mar 30 2020 03:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00372 * 2 1 4 4 H 1.48510 * 109.46860 * 270.00055 * 3 2 1 5 5 H 1.48497 * 109.47254 * 29.99722 * 3 2 1 6 6 H 1.48501 * 109.47268 * 150.00098 * 3 2 1 7 7 C 1.37881 * 119.99455 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00538 * 359.97438 * 7 2 1 9 9 C 1.50709 * 119.99680 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.46474 * 299.99928 * 9 7 2 11 11 O 1.42900 * 109.47188 * 59.99576 * 9 7 2 12 12 C 1.50695 * 109.47015 * 179.97438 * 9 7 2 13 13 C 1.33389 * 125.20136 * 99.71698 * 12 9 7 14 14 C 1.38433 * 114.92022 * 180.26208 * 13 12 9 15 15 C 1.33388 * 114.91766 * 0.02562 * 14 13 12 16 16 N 1.48043 * 125.20054 * 180.02562 * 15 14 13 17 17 O 1.21800 * 120.00044 * 359.97438 * 16 15 14 18 18 O 1.21800 * 120.00243 * 179.97438 * 16 15 14 19 19 S 1.75879 * 109.59837 * 0.02562 * 15 14 13 20 20 H 0.96997 * 119.99972 * 0.02562 * 1 2 3 21 21 H 0.96702 * 113.99382 * 59.99942 * 11 9 7 22 22 H 1.07998 * 122.54399 * 0.24715 * 13 12 9 23 23 H 1.08000 * 122.53671 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8751 -0.6798 -0.8895 11 8 3.9874 -0.5213 1.1674 12 6 4.0137 -2.6150 -0.0001 13 6 4.4439 -3.2784 -1.0744 14 6 4.8531 -4.5785 -0.8320 15 6 4.7547 -4.9708 0.4391 16 7 5.1280 -6.3090 0.9505 17 8 5.5640 -7.1526 0.1877 18 8 4.9992 -6.5665 2.1339 19 16 4.1137 -3.6553 1.4147 20 1 -0.4850 0.8400 -0.0004 21 1 3.7017 -0.9254 1.9982 22 1 4.4706 -2.8351 -2.0588 23 1 5.2239 -5.2259 -1.6128 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535846648.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:02 Heat of formation + Delta-G solvation = -35.431000 kcal Electronic energy + Delta-G solvation = -13312.533189 eV Core-core repulsion = 10641.536593 eV Total energy + Delta-G solvation = -2670.996596 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.024 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.20498 -39.62543 -37.87187 -37.63863 -34.55951 -32.44919 -29.77488 -27.31202 -24.89662 -23.58936 -21.60636 -20.50211 -19.75072 -19.00997 -18.75902 -17.66888 -16.95968 -16.72948 -15.61059 -15.02701 -14.80243 -14.52670 -13.84910 -13.59960 -13.12631 -12.85246 -12.72071 -12.66655 -12.41887 -12.40196 -11.99602 -11.44187 -10.97115 -10.61056 -10.17460 -9.86520 -8.42543 -6.63115 -1.37388 -0.47158 0.09089 0.39144 0.66902 1.35250 1.41073 1.48666 1.73725 2.37829 2.93619 3.55768 3.74560 3.82627 4.10663 4.49523 4.69295 4.91333 5.09797 5.13793 5.23173 5.94966 6.40442 6.49781 6.84933 7.16728 8.70246 Molecular weight = 229.02amu Principal moments of inertia in cm(-1) A = 0.056686 B = 0.007117 C = 0.007080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.834462 B = 3933.566134 C = 3953.811434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.038 3.962 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.041 0.959 9 C 0.256 3.744 10 H 0.102 0.898 11 O -0.570 6.570 12 C -0.114 4.114 13 C -0.165 4.165 14 C -0.002 4.002 15 C -0.226 4.226 16 N 0.071 4.929 17 O -0.151 6.151 18 O -0.200 6.200 19 S 0.237 5.763 20 H 0.271 0.729 21 H 0.368 0.632 22 H 0.189 0.811 23 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.354 -4.187 -1.180 11.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.164 4.164 3 Si 0.757 3.243 4 H -0.202 1.202 5 H -0.225 1.225 6 H -0.123 1.123 7 C -0.605 4.605 8 H 0.059 0.941 9 C 0.196 3.804 10 H 0.119 0.881 11 O -0.377 6.377 12 C -0.235 4.235 13 C -0.193 4.193 14 C -0.040 4.040 15 C -0.428 4.428 16 N 0.585 4.415 17 O -0.370 6.370 18 O -0.405 6.405 19 S 0.503 5.497 20 H 0.080 0.920 21 H 0.216 0.784 22 H 0.206 0.794 23 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 9.957 -2.947 -0.199 10.385 hybrid contribution -0.297 -0.375 -0.966 1.078 sum 9.659 -3.322 -1.165 10.281 Atomic orbital electron populations 1.70041 1.08606 1.28939 1.48906 1.25817 0.95254 1.03522 0.91799 0.86049 0.81991 0.77211 0.79047 1.20177 1.22467 1.12326 1.21473 0.90303 0.93840 1.54898 0.94085 1.18508 0.91720 0.82257 0.87944 0.88103 1.86742 1.77335 1.57148 1.16503 1.26581 0.97677 1.02389 0.96848 1.20315 1.04283 0.93000 1.01738 1.20641 0.92518 0.96437 0.94369 1.25982 1.25271 0.90261 1.01247 1.42613 0.97254 1.01246 1.00373 1.94491 1.46093 1.41412 1.55032 1.94560 1.60377 1.85512 1.00085 1.84569 1.58867 0.98421 1.07869 0.91954 0.78367 0.79433 0.78906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.09 13.96 21.45 0.30 -52.79 14 2 C 0.04 1.99 5.47 84.66 0.46 2.45 14 3 Si 0.93 39.63 26.99 68.60 1.85 41.48 14 4 H -0.28 -11.39 7.11 99.48 0.71 -10.68 14 5 H -0.30 -12.98 7.11 99.48 0.71 -12.28 14 6 H -0.20 -7.97 5.31 99.48 0.53 -7.45 14 7 C -0.57 -28.04 9.33 25.60 0.24 -27.80 14 8 H 0.04 2.29 7.98 -2.91 -0.02 2.27 14 9 C 0.26 9.90 2.76 29.10 0.08 9.98 14 10 H 0.10 3.70 7.55 -2.39 -0.02 3.68 14 11 O -0.57 -21.37 10.09 -148.98 -1.50 -22.87 14 12 C -0.11 -3.77 5.41 24.59 0.13 -3.63 14 13 C -0.17 -4.47 10.04 21.22 0.21 -4.26 14 14 C 0.00 -0.06 9.81 21.22 0.21 0.15 14 15 C -0.23 -6.91 7.50 80.82 0.61 -6.31 14 16 N 0.07 2.33 4.46 -48.12 -0.21 2.11 14 17 O -0.15 -4.79 18.94 18.89 0.36 -4.43 14 18 O -0.20 -7.00 19.08 18.89 0.36 -6.64 14 19 S 0.24 7.45 22.44 -56.49 -1.27 6.19 14 20 H 0.27 14.61 8.31 -92.71 -0.77 13.84 14 21 H 0.37 12.40 8.44 -74.06 -0.63 11.77 14 22 H 0.19 4.02 8.06 -2.91 -0.02 3.99 14 23 H 0.19 3.63 8.01 -2.91 -0.02 3.61 14 Total: -1.00 -59.92 234.14 2.28 -57.63 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.46 Total: 8.77 kcal Atomic # 6 Polarization: -31.37 SS G_CDS: 1.94 Total: -29.43 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.08 Total: -50.68 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -0.78 Total: -33.95 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 1.85 Total: 41.48 kcal Atomic # 16 Polarization: 7.45 SS G_CDS: -1.27 Total: 6.19 kcal Total: -59.92 2.28 -57.63 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535846648.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.200 kcal (2) G-P(sol) polarization free energy of solvation -59.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds