Wall clock time and date at job start Mon Mar 30 2020 03:14:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86793 * 120.00372 * 2 1
4 4 H 1.48510 * 109.46860 * 270.00055 * 3 2 1
5 5 H 1.48497 * 109.47254 * 29.99722 * 3 2 1
6 6 H 1.48501 * 109.47268 * 150.00098 * 3 2 1
7 7 C 1.37881 * 119.99455 * 180.02562 * 2 1 3
8 8 H 1.07992 * 120.00538 * 359.97438 * 7 2 1
9 9 C 1.50709 * 119.99680 * 180.02562 * 7 2 1
10 10 H 1.08999 * 109.46474 * 299.99928 * 9 7 2
11 11 O 1.42900 * 109.47188 * 59.99576 * 9 7 2
12 12 C 1.50695 * 109.47015 * 179.97438 * 9 7 2
13 13 C 1.33389 * 125.20136 * 99.71698 * 12 9 7
14 14 C 1.38433 * 114.92022 * 180.26208 * 13 12 9
15 15 C 1.33388 * 114.91766 * 0.02562 * 14 13 12
16 16 N 1.48043 * 125.20054 * 180.02562 * 15 14 13
17 17 O 1.21800 * 120.00044 * 359.97438 * 16 15 14
18 18 O 1.21800 * 120.00243 * 179.97438 * 16 15 14
19 19 S 1.75879 * 109.59837 * 0.02562 * 15 14 13
20 20 H 0.96997 * 119.99972 * 0.02562 * 1 2 3
21 21 H 0.96702 * 113.99382 * 59.99942 * 11 9 7
22 22 H 1.07998 * 122.54399 * 0.24715 * 13 12 9
23 23 H 1.08000 * 122.53671 * 180.02562 * 14 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 2.4967 2.0463 -1.4002
5 1 1.4467 2.6526 0.7000
6 1 3.5468 1.4400 0.7000
7 6 2.0044 -1.1942 -0.0005
8 1 1.4645 -2.1294 -0.0005
9 6 3.5115 -1.1942 0.0000
10 1 3.8751 -0.6798 -0.8895
11 8 3.9874 -0.5213 1.1674
12 6 4.0137 -2.6150 -0.0001
13 6 4.4439 -3.2784 -1.0744
14 6 4.8531 -4.5785 -0.8320
15 6 4.7547 -4.9708 0.4391
16 7 5.1280 -6.3090 0.9505
17 8 5.5640 -7.1526 0.1877
18 8 4.9992 -6.5665 2.1339
19 16 4.1137 -3.6553 1.4147
20 1 -0.4850 0.8400 -0.0004
21 1 3.7017 -0.9254 1.9982
22 1 4.4706 -2.8351 -2.0588
23 1 5.2239 -5.2259 -1.6128
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001535846648.mol2 23
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:14:02
Heat of formation + Delta-G solvation = -35.431000 kcal
Electronic energy + Delta-G solvation = -13312.533189 eV
Core-core repulsion = 10641.536593 eV
Total energy + Delta-G solvation = -2670.996596 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 229.024 amu
Computer time = 0.15 seconds
Orbital eigenvalues (eV)
-43.20498 -39.62543 -37.87187 -37.63863 -34.55951 -32.44919 -29.77488 -27.31202
-24.89662 -23.58936 -21.60636 -20.50211 -19.75072 -19.00997 -18.75902 -17.66888
-16.95968 -16.72948 -15.61059 -15.02701 -14.80243 -14.52670 -13.84910 -13.59960
-13.12631 -12.85246 -12.72071 -12.66655 -12.41887 -12.40196 -11.99602 -11.44187
-10.97115 -10.61056 -10.17460 -9.86520 -8.42543 -6.63115 -1.37388 -0.47158
0.09089 0.39144 0.66902 1.35250 1.41073 1.48666 1.73725 2.37829
2.93619 3.55768 3.74560 3.82627 4.10663 4.49523 4.69295 4.91333
5.09797 5.13793 5.23173 5.94966 6.40442 6.49781 6.84933 7.16728
8.70246
Molecular weight = 229.02amu
Principal moments of inertia in cm(-1)
A = 0.056686 B = 0.007117 C = 0.007080
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 493.834462 B = 3933.566134 C = 3953.811434
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.927 5.927
2 C 0.038 3.962
3 Si 0.934 3.066
4 H -0.276 1.276
5 H -0.298 1.298
6 H -0.202 1.202
7 C -0.567 4.567
8 H 0.041 0.959
9 C 0.256 3.744
10 H 0.102 0.898
11 O -0.570 6.570
12 C -0.114 4.114
13 C -0.165 4.165
14 C -0.002 4.002
15 C -0.226 4.226
16 N 0.071 4.929
17 O -0.151 6.151
18 O -0.200 6.200
19 S 0.237 5.763
20 H 0.271 0.729
21 H 0.368 0.632
22 H 0.189 0.811
23 H 0.194 0.806
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.354 -4.187 -1.180 11.230
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.565 5.565
2 C -0.164 4.164
3 Si 0.757 3.243
4 H -0.202 1.202
5 H -0.225 1.225
6 H -0.123 1.123
7 C -0.605 4.605
8 H 0.059 0.941
9 C 0.196 3.804
10 H 0.119 0.881
11 O -0.377 6.377
12 C -0.235 4.235
13 C -0.193 4.193
14 C -0.040 4.040
15 C -0.428 4.428
16 N 0.585 4.415
17 O -0.370 6.370
18 O -0.405 6.405
19 S 0.503 5.497
20 H 0.080 0.920
21 H 0.216 0.784
22 H 0.206 0.794
23 H 0.211 0.789
Dipole moment (debyes) X Y Z Total
from point charges 9.957 -2.947 -0.199 10.385
hybrid contribution -0.297 -0.375 -0.966 1.078
sum 9.659 -3.322 -1.165 10.281
Atomic orbital electron populations
1.70041 1.08606 1.28939 1.48906 1.25817 0.95254 1.03522 0.91799
0.86049 0.81991 0.77211 0.79047 1.20177 1.22467 1.12326 1.21473
0.90303 0.93840 1.54898 0.94085 1.18508 0.91720 0.82257 0.87944
0.88103 1.86742 1.77335 1.57148 1.16503 1.26581 0.97677 1.02389
0.96848 1.20315 1.04283 0.93000 1.01738 1.20641 0.92518 0.96437
0.94369 1.25982 1.25271 0.90261 1.01247 1.42613 0.97254 1.01246
1.00373 1.94491 1.46093 1.41412 1.55032 1.94560 1.60377 1.85512
1.00085 1.84569 1.58867 0.98421 1.07869 0.91954 0.78367 0.79433
0.78906
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -53.09 13.96 21.45 0.30 -52.79 14
2 C 0.04 1.99 5.47 84.66 0.46 2.45 14
3 Si 0.93 39.63 26.99 68.60 1.85 41.48 14
4 H -0.28 -11.39 7.11 99.48 0.71 -10.68 14
5 H -0.30 -12.98 7.11 99.48 0.71 -12.28 14
6 H -0.20 -7.97 5.31 99.48 0.53 -7.45 14
7 C -0.57 -28.04 9.33 25.60 0.24 -27.80 14
8 H 0.04 2.29 7.98 -2.91 -0.02 2.27 14
9 C 0.26 9.90 2.76 29.10 0.08 9.98 14
10 H 0.10 3.70 7.55 -2.39 -0.02 3.68 14
11 O -0.57 -21.37 10.09 -148.98 -1.50 -22.87 14
12 C -0.11 -3.77 5.41 24.59 0.13 -3.63 14
13 C -0.17 -4.47 10.04 21.22 0.21 -4.26 14
14 C 0.00 -0.06 9.81 21.22 0.21 0.15 14
15 C -0.23 -6.91 7.50 80.82 0.61 -6.31 14
16 N 0.07 2.33 4.46 -48.12 -0.21 2.11 14
17 O -0.15 -4.79 18.94 18.89 0.36 -4.43 14
18 O -0.20 -7.00 19.08 18.89 0.36 -6.64 14
19 S 0.24 7.45 22.44 -56.49 -1.27 6.19 14
20 H 0.27 14.61 8.31 -92.71 -0.77 13.84 14
21 H 0.37 12.40 8.44 -74.06 -0.63 11.77 14
22 H 0.19 4.02 8.06 -2.91 -0.02 3.99 14
23 H 0.19 3.63 8.01 -2.91 -0.02 3.61 14
Total: -1.00 -59.92 234.14 2.28 -57.63
By element:
Atomic # 1 Polarization: 8.31 SS G_CDS: 0.46 Total: 8.77 kcal
Atomic # 6 Polarization: -31.37 SS G_CDS: 1.94 Total: -29.43 kcal
Atomic # 7 Polarization: -50.77 SS G_CDS: 0.08 Total: -50.68 kcal
Atomic # 8 Polarization: -33.17 SS G_CDS: -0.78 Total: -33.95 kcal
Atomic # 14 Polarization: 39.63 SS G_CDS: 1.85 Total: 41.48 kcal
Atomic # 16 Polarization: 7.45 SS G_CDS: -1.27 Total: 6.19 kcal
Total: -59.92 2.28 -57.63 kcal
The number of atoms in the molecule is 23
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001535846648.mol2 23
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.200 kcal
(2) G-P(sol) polarization free energy of solvation -59.916 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.716 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.631 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.431 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds