Wall clock time and date at job start Mon Mar 30 2020 03:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31356 * 1 3 3 Si 1.86793 * 119.99960 * 2 1 4 4 H 1.48499 * 109.47083 * 269.99791 * 3 2 1 5 5 H 1.48497 * 109.47333 * 29.99924 * 3 2 1 6 6 H 1.48502 * 109.47183 * 149.99893 * 3 2 1 7 7 C 1.39076 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99994 * 0.02562 * 7 2 1 9 9 N 1.36818 * 119.99828 * 180.02562 * 7 2 1 10 10 C 1.34775 * 119.99729 * 180.02562 * 9 7 2 11 11 O 1.21662 * 120.00275 * 0.02562 * 10 9 7 12 12 C 1.46953 * 119.99523 * 179.97438 * 10 9 7 13 13 C 1.31192 * 116.33181 * 179.97438 * 12 10 9 14 14 S 1.76180 * 122.63432 * 179.17067 * 13 12 10 15 15 O 1.42102 * 103.00197 * 126.64165 * 14 13 12 16 16 C 1.81863 * 102.09476 * 13.10600 * 14 13 12 17 17 C 1.53551 * 107.58441 * 314.13070 * 16 14 13 18 18 C 1.49000 * 116.34080 * 359.97438 * 12 10 9 19 19 H 0.97001 * 119.99743 * 359.97438 * 1 2 3 20 20 H 0.97000 * 119.99941 * 359.97438 * 9 7 2 21 21 H 1.08000 * 118.68738 * 359.14437 * 13 12 10 22 22 H 1.09002 * 109.84757 * 73.67181 * 16 14 13 23 23 H 1.09003 * 109.84645 * 194.58955 * 16 14 13 24 24 H 1.09004 * 109.50311 * 190.62775 * 17 16 14 25 25 H 1.09005 * 109.50463 * 310.74937 * 17 16 14 26 26 H 1.09004 * 108.77450 * 321.96215 * 18 12 10 27 27 H 1.08997 * 108.78587 * 80.26580 * 18 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.4950 2.0463 -1.4001 5 1 1.4450 2.6526 0.7000 6 1 3.5451 1.4401 0.7001 7 6 2.0089 -1.2045 0.0005 8 1 1.4689 -2.1398 0.0005 9 7 3.3771 -1.2045 0.0011 10 6 4.0509 -2.3717 0.0011 11 8 3.4426 -3.4253 0.0001 12 6 5.5204 -2.3717 0.0011 13 6 6.1024 -3.5474 0.0016 14 16 7.8534 -3.7409 -0.0198 15 8 8.0949 -4.5897 1.0940 16 6 8.4273 -2.0585 0.3645 17 6 7.6196 -1.0831 -0.5038 18 6 6.1815 -1.0363 0.0005 19 1 -0.4850 0.8401 0.0004 20 1 3.8621 -0.3644 0.0007 21 1 5.4833 -4.4323 0.0161 22 1 8.2586 -1.8418 1.4193 23 1 9.4887 -1.9678 0.1334 24 1 8.0615 -0.0887 -0.4414 25 1 7.6310 -1.4227 -1.5395 26 1 5.6087 -0.3616 -0.6358 27 1 6.1809 -0.6439 1.0173 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001546236261.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:29 Heat of formation + Delta-G solvation = -57.471857 kcal Electronic energy + Delta-G solvation = -13823.212997 eV Core-core repulsion = 11287.093732 eV Total energy + Delta-G solvation = -2536.119265 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.08570 -36.18654 -35.50333 -34.30833 -31.92674 -31.46984 -27.41482 -25.52298 -22.84128 -21.26890 -19.13386 -18.27784 -17.06883 -16.50178 -15.36807 -14.98617 -14.68851 -14.63734 -13.90646 -13.80426 -13.38346 -13.09635 -12.97773 -12.42598 -12.05999 -11.54776 -11.41857 -11.30320 -11.26596 -10.76076 -10.15382 -9.93226 -9.81849 -9.45564 -8.68514 -8.37757 -8.16187 -6.53789 -3.97476 1.36637 2.05877 2.70690 2.89134 2.93645 3.01830 3.91413 3.93516 4.08829 4.52837 4.72028 4.75480 4.89072 5.12852 5.29323 5.39166 5.53246 5.72671 5.78446 5.99715 6.02221 6.32559 6.85397 7.37640 7.97126 8.39880 8.75399 9.21028 9.67169 10.57972 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.044979 B = 0.007612 C = 0.006654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.363137 B = 3677.746506 C = 4207.255495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.044 3.956 3 Si 0.878 3.122 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.268 1.268 7 C -0.302 4.302 8 H 0.124 0.876 9 N -0.567 5.567 10 C 0.449 3.551 11 O -0.576 6.576 12 C -0.042 4.042 13 C -0.477 4.477 14 S 1.322 4.678 15 O -0.867 6.867 16 C -0.459 4.459 17 C -0.092 4.092 18 C -0.116 4.116 19 H 0.278 0.722 20 H 0.373 0.627 21 H 0.158 0.842 22 H 0.089 0.911 23 H 0.115 0.885 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.141 2.625 -4.919 18.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.162 4.162 3 Si 0.704 3.296 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.431 4.431 8 H 0.141 0.859 9 N -0.204 5.204 10 C 0.236 3.764 11 O -0.460 6.460 12 C -0.048 4.048 13 C -0.597 4.597 14 S 1.521 4.479 15 O -0.863 6.863 16 C -0.596 4.596 17 C -0.130 4.130 18 C -0.153 4.153 19 H 0.089 0.911 20 H 0.207 0.793 21 H 0.176 0.824 22 H 0.108 0.892 23 H 0.133 0.867 24 H 0.097 0.903 25 H 0.102 0.898 26 H 0.107 0.893 27 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 17.028 1.227 -5.063 17.807 hybrid contribution -0.604 2.224 2.055 3.088 sum 16.424 3.451 -3.008 17.050 Atomic orbital electron populations 1.69596 1.05818 1.28121 1.46574 1.25156 0.95597 0.98301 0.97132 0.86682 0.79971 0.83660 0.79333 1.19007 1.19646 1.19312 1.19578 0.79413 0.96954 1.47153 0.85873 1.42333 1.07732 1.06553 1.63826 1.18142 0.87128 0.84580 0.86524 1.90651 1.69001 1.30740 1.55647 1.20725 0.95365 0.94318 0.94423 1.29816 1.18286 1.02643 1.08965 1.68990 0.84024 0.82555 1.12294 1.93113 1.81511 1.55876 1.55778 1.27860 1.07009 1.18533 1.06159 1.21149 0.92956 0.99715 0.99194 1.20501 0.96399 0.94994 1.03371 0.91113 0.79296 0.82448 0.89216 0.86690 0.90288 0.89817 0.89327 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.40 13.95 55.50 0.77 -23.62 15 2 C 0.04 1.16 5.50 -17.44 -0.10 1.07 15 3 Si 0.88 18.48 27.74 -169.99 -4.71 13.77 15 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 15 5 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 6 H -0.27 -5.12 6.52 56.52 0.37 -4.75 15 7 C -0.30 -8.46 10.16 -15.02 -0.15 -8.61 15 8 H 0.12 3.95 7.38 -52.49 -0.39 3.57 15 9 N -0.57 -13.61 4.96 -12.10 -0.06 -13.67 15 10 C 0.45 10.74 7.61 -12.73 -0.10 10.65 15 11 O -0.58 -16.32 15.38 5.22 0.08 -16.24 15 12 C -0.04 -0.75 5.76 -103.67 -0.60 -1.35 15 13 C -0.48 -8.08 9.49 28.96 0.27 -7.80 15 14 S 1.32 15.53 14.11 -107.50 -1.52 14.01 15 15 O -0.87 -16.12 17.87 -35.23 -0.63 -16.75 15 16 C -0.46 -4.51 6.51 37.44 0.24 -4.26 15 17 C -0.09 -0.84 5.87 -26.72 -0.16 -1.00 15 18 C -0.12 -1.55 4.74 -28.97 -0.14 -1.69 15 19 H 0.28 7.18 8.31 -40.82 -0.34 6.84 15 20 H 0.37 7.67 3.66 -40.82 -0.15 7.52 15 21 H 0.16 3.11 7.04 -52.49 -0.37 2.74 15 22 H 0.09 1.07 8.11 -51.93 -0.42 0.65 15 23 H 0.11 0.78 8.14 -51.93 -0.42 0.36 15 24 H 0.08 0.59 8.14 -51.93 -0.42 0.16 15 25 H 0.08 0.57 8.07 -51.93 -0.42 0.15 15 26 H 0.09 1.14 6.72 -51.93 -0.35 0.79 15 27 H 0.09 1.15 8.14 -51.93 -0.42 0.73 15 LS Contribution 244.11 15.07 3.68 3.68 Total: -1.00 -37.69 244.11 -5.64 -43.33 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -2.53 Total: 8.49 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -0.72 Total: -13.00 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.71 Total: -37.29 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.55 Total: -32.99 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -4.71 Total: 13.77 kcal Atomic # 16 Polarization: 15.53 SS G_CDS: -1.52 Total: 14.01 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -37.69 -5.64 -43.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546236261.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.144 kcal (2) G-P(sol) polarization free energy of solvation -37.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds