Wall clock time and date at job start Mon Mar 30 2020 03:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31356 * 1 3 3 Si 1.86793 * 119.99960 * 2 1 4 4 H 1.48499 * 109.47083 * 269.99791 * 3 2 1 5 5 H 1.48497 * 109.47333 * 29.99924 * 3 2 1 6 6 H 1.48502 * 109.47183 * 149.99893 * 3 2 1 7 7 C 1.39076 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99994 * 0.02562 * 7 2 1 9 9 N 1.36818 * 119.99828 * 180.02562 * 7 2 1 10 10 C 1.34775 * 119.99729 * 180.02562 * 9 7 2 11 11 O 1.21662 * 120.00275 * 0.02562 * 10 9 7 12 12 C 1.46953 * 119.99523 * 179.97438 * 10 9 7 13 13 C 1.31192 * 116.33181 * 179.97438 * 12 10 9 14 14 S 1.76180 * 122.63432 * 179.17067 * 13 12 10 15 15 O 1.42102 * 103.00197 * 126.64165 * 14 13 12 16 16 C 1.81863 * 102.09476 * 13.10600 * 14 13 12 17 17 C 1.53551 * 107.58441 * 314.13070 * 16 14 13 18 18 C 1.49000 * 116.34080 * 359.97438 * 12 10 9 19 19 H 0.97001 * 119.99743 * 359.97438 * 1 2 3 20 20 H 0.97000 * 119.99941 * 359.97438 * 9 7 2 21 21 H 1.08000 * 118.68738 * 359.14437 * 13 12 10 22 22 H 1.09002 * 109.84757 * 73.67181 * 16 14 13 23 23 H 1.09003 * 109.84645 * 194.58955 * 16 14 13 24 24 H 1.09004 * 109.50311 * 190.62775 * 17 16 14 25 25 H 1.09005 * 109.50463 * 310.74937 * 17 16 14 26 26 H 1.09004 * 108.77450 * 321.96215 * 18 12 10 27 27 H 1.08997 * 108.78587 * 80.26580 * 18 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.4950 2.0463 -1.4001 5 1 1.4450 2.6526 0.7000 6 1 3.5451 1.4401 0.7001 7 6 2.0089 -1.2045 0.0005 8 1 1.4689 -2.1398 0.0005 9 7 3.3771 -1.2045 0.0011 10 6 4.0509 -2.3717 0.0011 11 8 3.4426 -3.4253 0.0001 12 6 5.5204 -2.3717 0.0011 13 6 6.1024 -3.5474 0.0016 14 16 7.8534 -3.7409 -0.0198 15 8 8.0949 -4.5897 1.0940 16 6 8.4273 -2.0585 0.3645 17 6 7.6196 -1.0831 -0.5038 18 6 6.1815 -1.0363 0.0005 19 1 -0.4850 0.8401 0.0004 20 1 3.8621 -0.3644 0.0007 21 1 5.4833 -4.4323 0.0161 22 1 8.2586 -1.8418 1.4193 23 1 9.4887 -1.9678 0.1334 24 1 8.0615 -0.0887 -0.4414 25 1 7.6310 -1.4227 -1.5395 26 1 5.6087 -0.3616 -0.6358 27 1 6.1809 -0.6439 1.0173 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001546236261.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:29 Heat of formation + Delta-G solvation = -89.402102 kcal Electronic energy + Delta-G solvation = -13824.597596 eV Core-core repulsion = 11287.093732 eV Total energy + Delta-G solvation = -2537.503864 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.88579 -37.44981 -36.82929 -36.33935 -33.95620 -32.68686 -28.62078 -27.29400 -24.20152 -22.58877 -21.05274 -19.90541 -18.27065 -17.91880 -17.17818 -16.18529 -16.12573 -16.00765 -15.52447 -15.28212 -14.86165 -14.47513 -14.33244 -14.09910 -13.40526 -13.08413 -12.68426 -12.56078 -12.24758 -12.17834 -11.97943 -11.67481 -11.22746 -10.86679 -10.53942 -10.42615 -9.29853 -8.57269 -6.16375 -0.02186 0.94683 1.23141 1.32831 1.39124 1.63390 2.13038 2.17458 2.82705 2.98636 3.08266 3.61242 3.80060 3.97990 4.23097 4.52015 4.56290 4.66141 4.87723 4.99932 5.16946 5.32104 5.34878 5.57744 5.79890 6.41017 6.68307 7.17208 7.74598 8.59503 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.044979 B = 0.007612 C = 0.006654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.363137 B = 3677.746506 C = 4207.255495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.008 4.008 3 Si 0.961 3.039 4 H -0.242 1.242 5 H -0.268 1.268 6 H -0.231 1.231 7 C -0.341 4.341 8 H 0.054 0.946 9 N -0.561 5.561 10 C 0.440 3.560 11 O -0.635 6.635 12 C -0.047 4.047 13 C -0.478 4.478 14 S 1.404 4.596 15 O -0.931 6.931 16 C -0.450 4.450 17 C -0.087 4.087 18 C -0.121 4.121 19 H 0.286 0.714 20 H 0.394 0.606 21 H 0.117 0.883 22 H 0.075 0.925 23 H 0.162 0.838 24 H 0.116 0.884 25 H 0.115 0.885 26 H 0.099 0.901 27 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.563 5.977 -5.669 23.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.779 3.221 4 H -0.165 1.165 5 H -0.192 1.192 6 H -0.154 1.154 7 C -0.470 4.470 8 H 0.072 0.928 9 N -0.200 5.200 10 C 0.229 3.771 11 O -0.523 6.523 12 C -0.053 4.053 13 C -0.594 4.594 14 S 1.603 4.397 15 O -0.927 6.927 16 C -0.589 4.589 17 C -0.125 4.125 18 C -0.158 4.158 19 H 0.096 0.904 20 H 0.232 0.768 21 H 0.135 0.865 22 H 0.094 0.906 23 H 0.180 0.820 24 H 0.135 0.865 25 H 0.134 0.866 26 H 0.117 0.883 27 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 21.428 4.554 -5.820 22.667 hybrid contribution -1.929 1.028 2.287 3.163 sum 19.500 5.583 -3.534 20.588 Atomic orbital electron populations 1.69764 1.08326 1.30051 1.47351 1.26290 0.96594 1.03020 0.95003 0.85442 0.79612 0.76075 0.81014 1.16514 1.19207 1.15393 1.19102 0.81403 0.95378 1.51156 0.92763 1.42047 1.06143 1.07608 1.64184 1.19420 0.90043 0.83604 0.84082 1.90614 1.71247 1.32980 1.57461 1.20819 0.91268 0.97339 0.95903 1.30388 1.21804 1.00954 1.06282 1.68135 0.78691 0.82994 1.09832 1.92987 1.81119 1.60268 1.58347 1.27813 1.09849 1.15460 1.05804 1.21308 0.89279 1.01610 1.00323 1.20714 0.99317 0.91425 1.04354 0.90417 0.76818 0.86486 0.90584 0.81987 0.86535 0.86625 0.88254 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.12 13.95 21.69 0.30 -53.82 15 2 C -0.01 -0.43 5.50 84.97 0.47 0.04 15 3 Si 0.96 36.63 27.74 68.60 1.90 38.54 15 4 H -0.24 -8.37 7.11 99.48 0.71 -7.66 15 5 H -0.27 -10.04 7.11 99.48 0.71 -9.33 15 6 H -0.23 -7.34 6.52 99.48 0.65 -6.69 15 7 C -0.34 -20.31 10.16 84.12 0.85 -19.46 15 8 H 0.05 3.87 7.38 -2.91 -0.02 3.85 15 9 N -0.56 -27.41 4.96 -310.42 -1.54 -28.96 15 10 C 0.44 21.88 7.61 86.53 0.66 22.54 15 11 O -0.63 -38.91 15.38 -4.23 -0.07 -38.98 15 12 C -0.05 -1.65 5.76 -18.33 -0.11 -1.76 15 13 C -0.48 -16.11 9.49 67.59 0.64 -15.47 15 14 S 1.40 29.09 14.11 -56.49 -0.80 28.29 15 15 O -0.93 -33.43 17.87 -148.98 -2.66 -36.09 15 16 C -0.45 -6.15 6.51 72.17 0.47 -5.68 15 17 C -0.09 -1.00 5.87 30.60 0.18 -0.82 15 18 C -0.12 -2.73 4.74 29.14 0.14 -2.60 15 19 H 0.29 15.19 8.31 -92.71 -0.77 14.42 15 20 H 0.39 15.44 3.66 -92.71 -0.34 15.10 15 21 H 0.12 4.94 7.04 -2.91 -0.02 4.92 15 22 H 0.08 1.40 8.11 -2.39 -0.02 1.39 15 23 H 0.16 0.91 8.14 -2.39 -0.02 0.89 15 24 H 0.12 0.71 8.14 -2.39 -0.02 0.69 15 25 H 0.12 0.70 8.07 -2.38 -0.02 0.68 15 26 H 0.10 2.06 6.72 -2.39 -0.02 2.04 15 27 H 0.09 2.02 8.14 -2.39 -0.02 2.00 15 Total: -1.00 -93.17 244.11 1.24 -91.92 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.80 Total: 22.30 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: 3.30 Total: -23.21 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -1.24 Total: -82.77 kcal Atomic # 8 Polarization: -72.34 SS G_CDS: -2.73 Total: -75.07 kcal Atomic # 14 Polarization: 36.63 SS G_CDS: 1.90 Total: 38.54 kcal Atomic # 16 Polarization: 29.09 SS G_CDS: -0.80 Total: 28.29 kcal Total: -93.17 1.24 -91.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546236261.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.521 kcal (2) G-P(sol) polarization free energy of solvation -93.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds