Wall clock time and date at job start Mon Mar 30 2020 03:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34267 * 125.73413 * 2 1 4 4 C 1.38130 * 107.42456 * 180.02562 * 3 2 1 5 5 C 1.47316 * 126.42857 * 179.97438 * 4 3 2 6 6 O 1.21633 * 119.99704 * 179.97438 * 5 4 3 7 7 N 1.34777 * 119.99959 * 0.02562 * 5 4 3 8 8 C 1.36985 * 119.99554 * 180.02562 * 7 5 4 9 9 H 1.07997 * 120.00586 * 359.97438 * 8 7 5 10 10 C 1.38973 * 119.99655 * 179.97438 * 8 7 5 11 11 N 1.31413 * 119.99973 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00182 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47233 * 59.99741 * 12 10 8 14 14 H 1.48501 * 109.47364 * 179.97438 * 12 10 8 15 15 H 1.48508 * 109.46883 * 299.99937 * 12 10 8 16 16 C 1.41421 * 107.13841 * 0.23890 * 4 3 2 17 17 Cl 1.73603 * 126.00130 * 179.73870 * 16 4 3 18 18 N 1.30522 * 107.99772 * 359.59249 * 16 4 3 19 19 H 1.09000 * 109.47140 * 90.00252 * 1 2 3 20 20 H 1.09001 * 109.47196 * 210.00396 * 1 2 3 21 21 H 1.08997 * 109.47096 * 330.00398 * 1 2 3 22 22 H 1.08005 * 126.28764 * 0.04972 * 3 2 1 23 23 H 0.96996 * 119.99887 * 359.97438 * 7 5 4 24 24 H 0.96999 * 119.99993 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2491 1.0899 0.0000 4 6 3.5605 0.6560 -0.0006 5 6 4.7634 1.5064 -0.0013 6 8 5.8681 0.9974 -0.0013 7 7 4.6398 2.8485 -0.0010 8 6 5.7583 3.6393 -0.0022 9 1 6.7392 3.1874 -0.0030 10 6 5.6309 5.0232 -0.0024 11 7 4.4374 5.5731 -0.0018 12 14 7.1561 6.1016 -0.0033 13 1 7.9639 5.8156 -1.2161 14 1 6.7521 7.5306 -0.0040 15 1 7.9651 5.8160 1.2089 16 6 3.5316 -0.7579 -0.0066 17 17 4.9149 -1.8068 -0.0161 18 7 2.2823 -1.1358 -0.0005 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3634 -0.8900 0.5139 21 1 -0.3633 0.8900 0.5138 22 1 1.9158 2.1172 0.0008 23 1 3.7588 3.2544 -0.0006 24 1 4.3484 6.5390 -0.0016 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001546236842.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:29 Heat of formation + Delta-G solvation = 12.372225 kcal Electronic energy + Delta-G solvation = -13348.624747 eV Core-core repulsion = 10709.950099 eV Total energy + Delta-G solvation = -2638.674648 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.36432 -39.63148 -37.72387 -35.92323 -34.11115 -33.32880 -31.43338 -28.01792 -26.80560 -23.64044 -22.09379 -20.97074 -20.03468 -18.32191 -17.21501 -16.77946 -16.40111 -16.05073 -15.69470 -15.13846 -14.75228 -14.30693 -14.01463 -13.51373 -13.41521 -12.90031 -12.58077 -12.54098 -12.38017 -12.08565 -11.75386 -11.48737 -10.41655 -10.38728 -9.99705 -9.69062 -8.44481 -5.88452 0.47172 0.49787 0.88555 1.46231 1.49783 1.56520 1.83054 2.34324 2.54934 3.27823 3.36629 3.52631 3.85436 4.32231 4.46581 4.48553 4.64367 4.74304 4.94109 5.46170 5.81125 6.03282 6.25685 6.64482 7.15515 7.58659 8.15631 8.73121 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.033345 B = 0.007756 C = 0.006314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.501863 B = 3609.018749 C = 4433.367647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.341 5.341 3 C 0.117 3.883 4 C -0.282 4.282 5 C 0.510 3.490 6 O -0.621 6.621 7 N -0.560 5.560 8 C -0.330 4.330 9 H 0.081 0.919 10 C -0.009 4.009 11 N -0.915 5.915 12 Si 0.992 3.008 13 H -0.273 1.273 14 H -0.269 1.269 15 H -0.273 1.273 16 C 0.147 3.853 17 Cl 0.015 6.985 18 N -0.303 5.303 19 H 0.100 0.900 20 H 0.103 0.897 21 H 0.127 0.873 22 H 0.223 0.777 23 H 0.397 0.603 24 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.294 -5.799 0.063 12.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.122 5.122 3 C -0.035 4.035 4 C -0.298 4.298 5 C 0.298 3.702 6 O -0.508 6.508 7 N -0.196 5.196 8 C -0.459 4.459 9 H 0.099 0.901 10 C -0.210 4.210 11 N -0.556 5.556 12 Si 0.816 3.184 13 H -0.198 1.198 14 H -0.193 1.193 15 H -0.198 1.198 16 C -0.045 4.045 17 Cl 0.043 6.957 18 N -0.130 5.130 19 H 0.118 0.882 20 H 0.122 0.878 21 H 0.145 0.855 22 H 0.240 0.760 23 H 0.232 0.768 24 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.472 -7.012 0.067 13.446 hybrid contribution 1.072 1.171 -0.021 1.587 sum -10.400 -5.842 0.046 11.928 Atomic orbital electron populations 1.22583 0.69486 1.07235 1.05956 1.48559 1.08469 1.01841 1.53295 1.23517 0.88485 0.95332 0.96174 1.20355 0.94479 0.92377 1.22556 1.17329 0.87757 0.82219 0.82888 1.90592 1.28192 1.74198 1.57827 1.41650 1.09316 1.03974 1.64627 1.19663 0.88087 0.88588 1.49612 0.90119 1.25986 1.01124 0.97613 0.96233 1.69630 1.23326 1.12775 1.49865 0.85002 0.77542 0.76988 0.78897 1.19844 1.19348 1.19827 1.22687 0.89488 0.90349 1.01938 1.98372 1.36014 1.64667 1.96661 1.77015 0.99640 1.09293 1.27049 0.88166 0.87815 0.85472 0.76048 0.76831 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.04 11.44 127.77 1.46 2.50 14 2 N -0.34 -8.78 3.98 -367.70 -1.46 -10.24 14 3 C 0.12 3.47 10.99 84.29 0.93 4.40 14 4 C -0.28 -11.53 6.13 -20.13 -0.12 -11.65 14 5 C 0.51 25.94 7.76 86.63 0.67 26.61 14 6 O -0.62 -35.97 15.29 -4.13 -0.06 -36.04 14 7 N -0.56 -28.81 5.27 -310.06 -1.63 -30.45 14 8 C -0.33 -18.62 9.68 84.06 0.81 -17.80 14 9 H 0.08 4.86 7.15 -2.91 -0.02 4.84 14 10 C -0.01 -0.49 5.50 84.93 0.47 -0.02 14 11 N -0.92 -47.47 13.05 21.67 0.28 -47.18 14 12 Si 0.99 42.21 29.55 68.60 2.03 44.24 14 13 H -0.27 -11.57 7.11 99.48 0.71 -10.87 14 14 H -0.27 -10.70 7.11 99.48 0.71 -9.99 14 15 H -0.27 -11.56 7.11 99.48 0.71 -10.86 14 16 C 0.15 5.78 7.88 85.67 0.68 6.46 14 17 Cl 0.02 0.58 28.00 -2.72 -0.08 0.51 14 18 N -0.30 -10.22 12.50 -48.93 -0.61 -10.84 14 19 H 0.10 0.90 8.14 -2.39 -0.02 0.88 14 20 H 0.10 1.09 8.14 -2.39 -0.02 1.07 14 21 H 0.13 0.79 8.14 -2.39 -0.02 0.77 14 22 H 0.22 4.97 7.46 -2.91 -0.02 4.95 14 23 H 0.40 18.60 6.82 -92.71 -0.63 17.96 14 24 H 0.28 13.53 8.31 -92.71 -0.77 12.76 14 Total: -1.00 -71.95 242.51 3.97 -67.98 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.62 Total: 11.52 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 4.89 Total: 10.50 kcal Atomic # 7 Polarization: -95.28 SS G_CDS: -3.43 Total: -98.71 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -0.06 Total: -36.04 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 17 Polarization: 0.58 SS G_CDS: -0.08 Total: 0.51 kcal Total: -71.95 3.97 -67.98 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546236842.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.353 kcal (2) G-P(sol) polarization free energy of solvation -71.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds