Wall clock time and date at job start Mon Mar 30 2020 03:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99826 * 2 1 4 4 O 1.20826 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99715 * 180.02562 * 3 2 1 6 6 O 1.42898 * 112.94578 * 23.40672 * 5 3 2 7 7 C 1.53953 * 113.74130 * 251.66711 * 5 3 2 8 8 N 1.47578 * 86.11875 * 222.04911 * 7 5 3 9 9 C 1.34776 * 134.49295 * 204.64252 * 8 7 5 10 10 O 1.21687 * 120.00173 * 179.97438 * 9 8 7 11 11 C 1.46369 * 119.99716 * 359.97438 * 9 8 7 12 12 H 1.07998 * 120.00455 * 0.02562 * 11 9 8 13 13 C 1.40058 * 120.00154 * 180.02562 * 11 9 8 14 14 N 1.30667 * 119.99204 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00278 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46835 * 90.00068 * 15 13 11 17 17 H 1.48492 * 109.46918 * 209.99940 * 15 13 11 18 18 H 1.48502 * 109.47059 * 329.99950 * 15 13 11 19 19 C 1.47587 * 91.01433 * 24.64148 * 8 7 5 20 20 H 1.09001 * 109.47157 * 60.00159 * 1 2 3 21 21 H 1.09004 * 109.47122 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47070 * 300.00317 * 1 2 3 23 23 H 0.96700 * 113.99927 * 309.66066 * 6 5 3 24 24 H 1.09001 * 113.76571 * 336.35649 * 7 5 3 25 25 H 1.08997 * 113.76089 * 107.74447 * 7 5 3 26 26 H 0.97002 * 119.99467 * 179.97438 * 14 13 11 27 27 H 1.09001 * 113.76722 * 221.05292 * 19 8 7 28 28 H 1.09005 * 113.86913 * 89.67457 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 8 4.1856 0.0981 -0.5238 7 6 4.1626 1.7496 1.3370 8 7 5.0814 2.5679 0.5220 9 6 6.3076 3.0913 0.7194 10 8 6.8391 3.7443 -0.1592 11 6 6.9998 2.8744 1.9906 12 1 6.5283 2.2946 2.7703 13 6 8.2738 3.4187 2.1961 14 7 8.8445 4.1198 1.2526 15 14 9.1576 3.1413 3.8182 16 1 9.9727 1.9030 3.7323 17 1 10.0437 4.2983 4.1033 18 1 8.1591 3.0020 4.9085 19 6 4.1182 2.5828 -0.5962 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 3.8625 -0.7243 -0.1309 24 1 3.4716 2.3361 1.9425 25 1 4.6599 0.9605 1.9009 26 1 9.7267 4.4972 1.3950 27 1 4.5802 2.4590 -1.5756 28 1 3.4135 3.4136 -0.5603 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714504291.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:05 Heat of formation + Delta-G solvation = -154.853667 kcal Electronic energy + Delta-G solvation = -16023.036267 eV Core-core repulsion = 13039.941339 eV Total energy + Delta-G solvation = -2983.094928 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.22004 -40.37525 -38.30582 -37.67668 -36.08621 -34.66774 -30.63973 -29.07116 -27.90958 -27.18786 -24.74802 -21.84315 -20.81523 -19.75939 -18.72327 -18.25854 -17.87060 -17.48928 -16.63574 -16.18427 -15.76873 -15.57590 -14.91496 -14.59255 -14.33147 -13.97462 -13.81242 -13.57096 -13.09389 -12.96676 -12.86965 -12.74374 -12.48732 -12.01143 -11.85637 -11.72824 -11.25486 -10.96355 -9.96767 -9.35468 -8.34409 -6.91507 0.82392 1.38269 1.41018 1.45319 1.58209 2.15849 2.36553 2.45150 2.80239 3.02408 3.49551 3.71901 3.93056 4.31457 4.35508 4.36485 4.42354 4.49602 4.73036 4.79534 4.91353 5.16590 5.27925 5.88950 6.30498 6.41901 6.68293 6.80939 7.41151 8.35139 8.61341 Molecular weight = 229.08amu Principal moments of inertia in cm(-1) A = 0.049941 B = 0.006398 C = 0.006090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.522299 B = 4375.224052 C = 4596.462154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.465 3.535 4 O -0.517 6.517 5 C 0.124 3.876 6 O -0.525 6.525 7 C 0.109 3.891 8 N -0.670 5.670 9 C 0.561 3.439 10 O -0.629 6.629 11 C -0.560 4.560 12 H 0.090 0.910 13 C 0.025 3.975 14 N -0.822 5.822 15 Si 1.005 2.995 16 H -0.259 1.259 17 H -0.272 1.272 18 H -0.246 1.246 19 C 0.123 3.877 20 H 0.062 0.938 21 H 0.138 0.862 22 H 0.066 0.934 23 H 0.408 0.592 24 H 0.097 0.903 25 H 0.106 0.894 26 H 0.277 0.723 27 H 0.070 0.930 28 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.456 -11.400 3.240 18.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.268 6.268 3 C 0.307 3.693 4 O -0.405 6.405 5 C 0.079 3.921 6 O -0.334 6.334 7 C -0.015 4.015 8 N -0.409 5.409 9 C 0.370 3.630 10 O -0.516 6.516 11 C -0.596 4.596 12 H 0.108 0.892 13 C -0.190 4.190 14 N -0.451 5.451 15 Si 0.824 3.176 16 H -0.183 1.183 17 H -0.197 1.197 18 H -0.169 1.169 19 C -0.001 4.001 20 H 0.080 0.920 21 H 0.156 0.844 22 H 0.085 0.915 23 H 0.260 0.740 24 H 0.114 0.886 25 H 0.124 0.876 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.741 -10.158 2.364 17.251 hybrid contribution -0.073 -0.042 0.473 0.480 sum -13.814 -10.199 2.837 17.404 Atomic orbital electron populations 1.23667 0.74019 1.06198 1.02784 1.86467 1.25620 1.31622 1.83090 1.24044 0.91295 0.82140 0.71810 1.90678 1.66697 1.37296 1.45871 1.22534 0.83064 0.89011 0.97479 1.86610 1.65352 1.15688 1.65730 1.23593 0.90551 0.94473 0.92871 1.49865 1.15714 1.57894 1.17463 1.18469 0.77959 0.77769 0.88787 1.90565 1.67007 1.46083 1.47980 1.21305 1.02733 1.36269 0.99283 0.89154 1.27105 0.97618 0.91951 1.02311 1.70193 1.14245 1.25605 1.35098 0.84914 0.78059 0.78741 0.75934 1.18342 1.19702 1.16911 1.22985 0.90343 0.93049 0.93713 0.91963 0.84372 0.91496 0.73976 0.88560 0.87580 0.91303 0.91144 0.88235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 15 2 O -0.35 -7.20 9.93 -46.71 -0.46 -7.67 15 3 C 0.47 12.62 7.28 71.24 0.52 13.14 15 4 O -0.52 -16.42 15.82 21.96 0.35 -16.08 15 5 C 0.12 3.89 1.86 -10.88 -0.02 3.87 15 6 O -0.52 -15.46 13.43 -136.89 -1.84 -17.29 15 7 C 0.11 3.75 7.84 86.48 0.68 4.43 15 8 N -0.67 -32.33 3.61 -845.29 -3.05 -35.37 15 9 C 0.56 34.31 7.98 86.36 0.69 35.00 15 10 O -0.63 -44.49 15.75 -4.31 -0.07 -44.56 15 11 C -0.56 -32.30 9.33 24.83 0.23 -32.07 15 12 H 0.09 4.62 7.67 -2.91 -0.02 4.60 15 13 C 0.03 1.42 5.50 85.31 0.47 1.89 15 14 N -0.82 -51.13 11.83 21.84 0.26 -50.87 15 15 Si 1.01 40.76 29.56 68.60 2.03 42.79 15 16 H -0.26 -9.94 7.11 99.48 0.71 -9.23 15 17 H -0.27 -10.66 7.11 99.48 0.71 -9.95 15 18 H -0.25 -9.15 7.11 99.48 0.71 -8.45 15 19 C 0.12 4.99 8.14 86.48 0.70 5.69 15 20 H 0.06 0.90 8.13 -2.39 -0.02 0.89 15 21 H 0.14 0.90 8.14 -2.38 -0.02 0.88 15 22 H 0.07 0.92 8.13 -2.39 -0.02 0.90 15 23 H 0.41 7.50 8.58 -74.06 -0.64 6.86 15 24 H 0.10 3.00 8.09 -2.39 -0.02 2.98 15 25 H 0.11 3.30 8.14 -2.39 -0.02 3.28 15 26 H 0.28 15.49 8.29 -92.71 -0.77 14.72 15 27 H 0.07 3.02 8.14 -2.39 -0.02 3.00 15 28 H 0.10 3.86 7.39 -2.38 -0.02 3.84 15 Total: -1.00 -83.47 260.46 2.24 -81.23 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.56 Total: 14.32 kcal Atomic # 6 Polarization: 29.04 SS G_CDS: 4.47 Total: 33.50 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -2.79 Total: -86.25 kcal Atomic # 8 Polarization: -83.57 SS G_CDS: -2.02 Total: -85.59 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -83.47 2.24 -81.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714504291.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.625 kcal (2) G-P(sol) polarization free energy of solvation -83.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds