Wall clock time and date at job start Mon Mar 30 2020 03:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34644 * 116.99750 * 2 1 4 4 O 1.21507 * 119.99930 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99827 * 179.97438 * 3 2 1 6 6 C 1.46925 * 120.62933 * 0.02562 * 5 3 2 7 7 C 1.53191 * 108.77562 * 233.58346 * 6 5 3 8 8 C 1.53040 * 109.31327 * 305.36286 * 7 6 5 9 9 C 1.53044 * 109.53609 * 61.36519 * 8 7 6 10 10 O 1.42905 * 109.49574 * 58.58710 * 9 8 7 11 11 C 1.50696 * 109.50167 * 178.65170 * 9 8 7 12 12 H 1.08007 * 119.99518 * 359.97438 * 11 9 8 13 13 C 1.37873 * 120.00432 * 180.02562 * 11 9 8 14 14 N 1.31513 * 119.99892 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 120.00326 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46922 * 89.99823 * 15 13 11 17 17 H 1.48498 * 109.47445 * 209.99860 * 15 13 11 18 18 H 1.48497 * 109.46915 * 330.00310 * 15 13 11 19 19 C 1.46927 * 120.63015 * 179.71992 * 5 3 2 20 20 H 1.08999 * 109.47008 * 60.00031 * 1 2 3 21 21 H 1.08995 * 109.47277 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47465 * 300.00021 * 1 2 3 23 23 H 1.08999 * 109.59121 * 353.37387 * 6 5 3 24 24 H 1.08998 * 109.58763 * 113.79424 * 6 5 3 25 25 H 1.08998 * 109.50092 * 65.31633 * 7 6 5 26 26 H 1.09004 * 109.49944 * 185.38496 * 7 6 5 27 27 H 1.08996 * 109.46139 * 181.38324 * 8 7 6 28 28 H 1.09002 * 109.46109 * 301.36412 * 8 7 6 29 29 H 0.96701 * 114.00089 * 180.02562 * 10 9 8 30 30 H 0.96999 * 120.00001 * 179.97438 * 14 13 11 31 31 H 1.09006 * 109.58071 * 246.20340 * 19 5 3 32 32 H 1.08995 * 109.58576 * 6.62794 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.2228 0.0469 0.0005 7 6 5.2124 0.1130 1.1681 8 6 6.0234 1.4072 1.0716 9 6 5.0816 2.6097 1.1680 10 8 4.3654 2.5567 2.4035 11 6 5.8842 3.8836 1.1063 12 1 6.9590 3.8404 1.0084 13 6 5.2468 5.1042 1.1757 14 7 3.9382 5.1567 1.2953 15 14 6.2419 6.6833 1.0998 16 1 6.3787 7.1147 -0.3147 17 1 5.5489 7.7429 1.8756 18 1 7.5893 6.4475 1.6778 19 6 4.0905 2.5720 -0.0057 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 3.5759 -0.8223 0.1186 24 1 4.7705 -0.0276 -0.9389 25 1 4.6649 0.0961 2.1104 26 1 5.8858 -0.7430 1.1231 27 1 6.7452 1.4451 1.8874 28 1 6.5509 1.4350 0.1182 29 1 3.7480 3.2898 2.5321 30 1 3.4898 6.0155 1.3445 31 1 4.6276 2.6987 -0.9457 32 1 3.3561 3.3693 0.1083 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260100359.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:34 Heat of formation + Delta-G solvation = -131.983174 kcal Electronic energy + Delta-G solvation = -17204.359784 eV Core-core repulsion = 14358.089690 eV Total energy + Delta-G solvation = -2846.270094 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 229.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.92262 -37.85126 -35.62061 -34.56485 -32.16030 -31.61406 -29.18048 -27.39289 -25.21899 -24.39897 -21.84321 -20.46744 -18.80328 -17.59409 -16.59749 -16.33969 -15.97232 -15.05787 -14.52628 -14.01910 -13.73964 -13.45823 -13.05921 -12.94582 -12.48600 -12.15379 -11.95498 -11.60024 -11.37680 -11.00894 -10.72923 -10.47683 -10.32265 -10.26333 -10.15570 -9.94360 -9.74857 -9.23692 -8.74237 -8.39842 -7.59583 -6.18189 -4.31810 2.83601 3.23564 3.31249 3.34272 3.53803 4.30007 4.55896 5.07097 5.39139 5.48166 5.51455 5.60815 5.69716 5.75753 6.06562 6.09847 6.30034 6.33986 6.51850 6.67763 6.72163 6.89232 7.04901 7.19148 7.43593 7.53624 7.86479 8.10642 8.20042 8.71348 9.01078 9.37919 9.54869 10.84405 Molecular weight = 229.11amu Principal moments of inertia in cm(-1) A = 0.034107 B = 0.009535 C = 0.008030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.738482 B = 2935.893007 C = 3485.971997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.381 6.381 3 C 0.640 3.360 4 O -0.572 6.572 5 N -0.580 5.580 6 C 0.114 3.886 7 C -0.131 4.131 8 C -0.099 4.099 9 C 0.243 3.757 10 O -0.586 6.586 11 C -0.542 4.542 12 H 0.064 0.936 13 C 0.069 3.931 14 N -0.890 5.890 15 Si 0.902 3.098 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.100 3.900 20 H 0.057 0.943 21 H 0.094 0.906 22 H 0.059 0.941 23 H 0.078 0.922 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.380 0.620 30 H 0.271 0.729 31 H 0.053 0.947 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.912 -9.193 -2.843 9.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.296 6.296 3 C 0.394 3.606 4 O -0.461 6.461 5 N -0.319 5.319 6 C -0.009 4.009 7 C -0.169 4.169 8 C -0.137 4.137 9 C 0.203 3.797 10 O -0.395 6.395 11 C -0.581 4.581 12 H 0.082 0.918 13 C -0.134 4.134 14 N -0.529 5.529 15 Si 0.730 3.270 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.020 4.020 20 H 0.076 0.924 21 H 0.112 0.888 22 H 0.078 0.922 23 H 0.097 0.903 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.231 0.769 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.977 -9.311 -2.755 9.909 hybrid contribution 0.027 1.459 -0.194 1.472 sum -1.949 -7.852 -2.949 8.612 Atomic orbital electron populations 1.23021 0.75830 1.02438 1.02384 1.86200 1.23150 1.32383 1.87861 1.18167 0.83755 0.81604 0.77110 1.90975 1.64164 1.34597 1.56359 1.47301 1.01089 1.09438 1.74079 1.21622 0.93860 0.86886 0.98546 1.21869 0.97876 0.98239 0.98930 1.21478 0.97713 0.93625 1.00859 1.18987 0.87394 0.91990 0.81337 1.86095 1.60161 1.52869 1.40342 1.21663 0.94177 0.90580 1.51663 0.91773 1.25103 0.95072 0.99617 0.93565 1.69610 1.07454 1.26529 1.49318 0.86431 0.80117 0.82364 0.78128 1.20487 1.21027 1.19778 1.23078 0.97684 0.81765 0.99467 0.92406 0.88793 0.92216 0.90323 0.92197 0.91029 0.92264 0.92252 0.92193 0.76926 0.91909 0.92858 0.85600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.80 10.56 101.05 1.07 1.87 16 2 O -0.38 -6.86 9.20 -40.34 -0.37 -7.23 16 3 C 0.64 14.06 8.43 54.06 0.46 14.51 16 4 O -0.57 -14.39 15.54 -19.28 -0.30 -14.69 16 5 N -0.58 -12.44 2.91 -178.27 -0.52 -12.95 16 6 C 0.11 1.98 6.44 -3.71 -0.02 1.95 16 7 C -0.13 -2.32 5.94 -26.61 -0.16 -2.47 16 8 C -0.10 -2.04 4.86 -26.69 -0.13 -2.17 16 9 C 0.24 5.99 0.68 -91.41 -0.06 5.93 16 10 O -0.59 -15.51 12.16 -35.23 -0.43 -15.93 16 11 C -0.54 -14.34 8.25 -34.44 -0.28 -14.63 16 12 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 13 C 0.07 1.84 5.22 -17.82 -0.09 1.74 16 14 N -0.89 -24.33 9.77 55.43 0.54 -23.78 16 15 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 19 C 0.10 2.42 5.09 -3.46 -0.02 2.40 16 20 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.08 1.23 6.93 -51.93 -0.36 0.87 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.07 1.40 7.61 -51.93 -0.40 1.01 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.38 10.63 7.15 45.56 0.33 10.95 16 30 H 0.27 7.13 8.31 -40.82 -0.34 6.80 16 31 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.13 3.49 5.15 -51.93 -0.27 3.22 16 LS Contribution 263.93 15.07 3.98 3.98 Total: -1.00 -30.07 263.93 -4.98 -35.05 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -3.62 Total: 10.80 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 0.75 Total: 9.13 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.02 Total: -36.74 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -1.10 Total: -37.85 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.07 -4.98 -35.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260100359.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.929 kcal (2) G-P(sol) polarization free energy of solvation -30.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds