Wall clock time and date at job start Mon Mar 30 2020 03:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34644 * 116.99750 * 2 1 4 4 O 1.21507 * 119.99930 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99827 * 179.97438 * 3 2 1 6 6 C 1.46925 * 120.62933 * 0.02562 * 5 3 2 7 7 C 1.53191 * 108.77562 * 233.58346 * 6 5 3 8 8 C 1.53040 * 109.31327 * 305.36286 * 7 6 5 9 9 C 1.53044 * 109.53609 * 61.36519 * 8 7 6 10 10 O 1.42905 * 109.49574 * 58.58710 * 9 8 7 11 11 C 1.50696 * 109.50167 * 178.65170 * 9 8 7 12 12 H 1.08007 * 119.99518 * 359.97438 * 11 9 8 13 13 C 1.37873 * 120.00432 * 180.02562 * 11 9 8 14 14 N 1.31513 * 119.99892 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 120.00326 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46922 * 89.99823 * 15 13 11 17 17 H 1.48498 * 109.47445 * 209.99860 * 15 13 11 18 18 H 1.48497 * 109.46915 * 330.00310 * 15 13 11 19 19 C 1.46927 * 120.63015 * 179.71992 * 5 3 2 20 20 H 1.08999 * 109.47008 * 60.00031 * 1 2 3 21 21 H 1.08995 * 109.47277 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47465 * 300.00021 * 1 2 3 23 23 H 1.08999 * 109.59121 * 353.37387 * 6 5 3 24 24 H 1.08998 * 109.58763 * 113.79424 * 6 5 3 25 25 H 1.08998 * 109.50092 * 65.31633 * 7 6 5 26 26 H 1.09004 * 109.49944 * 185.38496 * 7 6 5 27 27 H 1.08996 * 109.46139 * 181.38324 * 8 7 6 28 28 H 1.09002 * 109.46109 * 301.36412 * 8 7 6 29 29 H 0.96701 * 114.00089 * 180.02562 * 10 9 8 30 30 H 0.96999 * 120.00001 * 179.97438 * 14 13 11 31 31 H 1.09006 * 109.58071 * 246.20340 * 19 5 3 32 32 H 1.08995 * 109.58576 * 6.62794 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.2228 0.0469 0.0005 7 6 5.2124 0.1130 1.1681 8 6 6.0234 1.4072 1.0716 9 6 5.0816 2.6097 1.1680 10 8 4.3654 2.5567 2.4035 11 6 5.8842 3.8836 1.1063 12 1 6.9590 3.8404 1.0084 13 6 5.2468 5.1042 1.1757 14 7 3.9382 5.1567 1.2953 15 14 6.2419 6.6833 1.0998 16 1 6.3787 7.1147 -0.3147 17 1 5.5489 7.7429 1.8756 18 1 7.5893 6.4475 1.6778 19 6 4.0905 2.5720 -0.0057 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 3.5759 -0.8223 0.1186 24 1 4.7705 -0.0276 -0.9389 25 1 4.6649 0.0961 2.1104 26 1 5.8858 -0.7430 1.1231 27 1 6.7452 1.4451 1.8874 28 1 6.5509 1.4350 0.1182 29 1 3.7480 3.2898 2.5321 30 1 3.4898 6.0155 1.3445 31 1 4.6276 2.6987 -0.9457 32 1 3.3561 3.3693 0.1083 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260100359.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:34 Heat of formation + Delta-G solvation = -154.124748 kcal Electronic energy + Delta-G solvation = -17205.319914 eV Core-core repulsion = 14358.089690 eV Total energy + Delta-G solvation = -2847.230225 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 229.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.55188 -39.54403 -37.25415 -36.37922 -34.18034 -33.28751 -30.97896 -28.69120 -27.10502 -26.00008 -23.49471 -22.11147 -20.51301 -19.35029 -18.39430 -17.99636 -17.54064 -16.96860 -16.30788 -15.55836 -15.38901 -15.03572 -14.73141 -14.63287 -14.12439 -13.77747 -13.45036 -13.26337 -12.88048 -12.83305 -12.59256 -12.27911 -12.06694 -11.84193 -11.74043 -11.72171 -11.43595 -11.03209 -10.71441 -10.33913 -9.37662 -8.18053 -6.39939 1.29873 1.42213 1.44194 1.53758 1.85104 2.38844 3.01155 3.15166 4.02723 4.10331 4.25332 4.31269 4.38096 4.42013 4.60131 4.64934 4.68687 4.80840 4.94472 5.04815 5.17626 5.24960 5.34948 5.51281 5.58672 5.64186 5.92067 6.15807 6.51536 6.67910 7.30671 7.37298 7.42080 8.81707 Molecular weight = 229.11amu Principal moments of inertia in cm(-1) A = 0.034107 B = 0.009535 C = 0.008030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.738482 B = 2935.893007 C = 3485.971997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.372 6.372 3 C 0.635 3.365 4 O -0.615 6.615 5 N -0.584 5.584 6 C 0.110 3.890 7 C -0.122 4.122 8 C -0.098 4.098 9 C 0.229 3.771 10 O -0.593 6.593 11 C -0.562 4.562 12 H 0.064 0.936 13 C 0.025 3.975 14 N -0.913 5.913 15 Si 0.963 3.037 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.268 1.268 19 C 0.110 3.890 20 H 0.057 0.943 21 H 0.144 0.856 22 H 0.050 0.950 23 H 0.101 0.899 24 H 0.086 0.914 25 H 0.048 0.952 26 H 0.104 0.896 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.369 0.631 30 H 0.268 0.732 31 H 0.055 0.945 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.123 -10.882 -3.461 11.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.286 6.286 3 C 0.390 3.610 4 O -0.507 6.507 5 N -0.323 5.323 6 C -0.012 4.012 7 C -0.160 4.160 8 C -0.136 4.136 9 C 0.189 3.811 10 O -0.400 6.400 11 C -0.600 4.600 12 H 0.082 0.918 13 C -0.175 4.175 14 N -0.552 5.552 15 Si 0.789 3.211 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.192 1.192 19 C -0.011 4.011 20 H 0.076 0.924 21 H 0.162 0.838 22 H 0.069 0.931 23 H 0.119 0.881 24 H 0.104 0.896 25 H 0.067 0.933 26 H 0.122 0.878 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.217 0.783 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.172 -11.059 -3.378 11.623 hybrid contribution -0.269 1.917 -0.002 1.936 sum -1.441 -9.142 -3.379 9.853 Atomic orbital electron populations 1.23452 0.73376 1.05549 1.02058 1.86203 1.25407 1.29761 1.87248 1.18353 0.83937 0.82152 0.76568 1.90943 1.65218 1.36385 1.58184 1.47311 1.01467 1.09864 1.73668 1.21952 0.93909 0.85656 0.99654 1.21821 0.98050 0.98209 0.97935 1.21472 0.97127 0.93448 1.01542 1.19278 0.87799 0.93404 0.80581 1.86096 1.60042 1.52206 1.41700 1.22002 0.94427 0.91831 1.51755 0.91756 1.25838 0.95875 1.02561 0.93267 1.69759 1.08742 1.26841 1.49872 0.85481 0.78781 0.78701 0.78183 1.19902 1.21143 1.19241 1.22624 0.96702 0.82437 0.99325 0.92371 0.83849 0.93063 0.88090 0.89559 0.93331 0.87783 0.92779 0.90516 0.78295 0.92229 0.92687 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.26 10.56 113.37 1.20 2.46 16 2 O -0.37 -12.70 9.20 -55.54 -0.51 -13.21 16 3 C 0.64 27.72 8.43 129.79 1.09 28.82 16 4 O -0.61 -31.69 15.54 19.82 0.31 -31.38 16 5 N -0.58 -24.58 2.91 -948.33 -2.76 -27.33 16 6 C 0.11 3.46 6.44 86.36 0.56 4.02 16 7 C -0.12 -3.96 5.94 30.67 0.18 -3.78 16 8 C -0.10 -3.88 4.86 30.62 0.15 -3.74 16 9 C 0.23 11.31 0.68 -11.30 -0.01 11.31 16 10 O -0.59 -32.01 12.16 -148.98 -1.81 -33.83 16 11 C -0.56 -29.85 8.25 25.60 0.21 -29.64 16 12 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 13 C 0.03 1.34 5.22 84.65 0.44 1.78 16 14 N -0.91 -51.28 9.77 21.45 0.21 -51.07 16 15 Si 0.96 42.60 29.54 68.60 2.03 44.63 16 16 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 17 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 19 C 0.11 5.40 5.09 86.52 0.44 5.84 16 20 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 21 H 0.14 2.21 8.14 -2.39 -0.02 2.19 16 22 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.10 2.77 6.93 -2.39 -0.02 2.75 16 24 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.05 1.81 7.61 -2.39 -0.02 1.79 16 26 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 27 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.37 21.42 7.15 -74.06 -0.53 20.89 16 30 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 31 H 0.05 2.60 8.14 -2.38 -0.02 2.58 16 32 H 0.09 5.03 5.15 -2.39 -0.01 5.02 16 Total: -1.00 -66.45 263.93 2.33 -64.12 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: 0.60 Total: 31.00 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: 4.26 Total: 17.07 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -2.55 Total: -78.40 kcal Atomic # 8 Polarization: -76.40 SS G_CDS: -2.01 Total: -78.42 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -66.45 2.33 -64.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260100359.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.000 kcal (2) G-P(sol) polarization free energy of solvation -66.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds