Wall clock time and date at job start Mon Mar 30 2020 02:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37784 * 120.11251 * 2 1 4 4 C 1.38791 * 120.66810 * 180.02562 * 3 2 1 5 5 C 1.36664 * 120.52560 * 0.02754 * 4 3 2 6 6 C 1.39593 * 119.76456 * 359.67681 * 5 4 3 7 7 C 1.46487 * 134.03646 * 179.64673 * 6 5 4 8 8 C 1.50708 * 126.50159 * 0.73250 * 7 6 5 9 9 C 1.50701 * 109.47168 * 84.71301 * 8 7 6 10 10 H 1.07992 * 119.99803 * 0.02562 * 9 8 7 11 11 C 1.37874 * 119.99907 * 179.72836 * 9 8 7 12 12 N 1.31513 * 119.99944 * 180.27474 * 11 9 8 13 13 Si 1.86802 * 119.99865 * 0.27501 * 11 9 8 14 14 H 1.48500 * 109.47489 * 90.00319 * 13 11 9 15 15 H 1.48500 * 109.46878 * 210.00055 * 13 11 9 16 16 H 1.48500 * 109.47187 * 329.99873 * 13 11 9 17 17 C 1.34239 * 107.00426 * 180.47107 * 7 6 5 18 18 N 1.36835 * 109.93304 * 0.23893 * 17 7 6 19 19 C 1.46496 * 125.06289 * 180.02562 * 18 17 7 20 20 C 1.37693 * 109.87702 * 0.02562 * 18 17 7 21 21 H 1.08995 * 109.47172 * 262.92861 * 1 2 3 22 22 H 1.09002 * 109.46974 * 22.92833 * 1 2 3 23 23 H 1.09000 * 109.47348 * 142.92624 * 1 2 3 24 24 H 1.07997 * 119.67221 * 0.04726 * 3 2 1 25 25 H 1.07996 * 119.73759 * 180.02562 * 4 3 2 26 26 H 1.07997 * 120.11960 * 179.97438 * 5 4 3 27 27 H 1.09000 * 109.46601 * 324.71227 * 8 7 6 28 28 H 1.09005 * 109.47171 * 204.71657 * 8 7 6 29 29 H 0.97002 * 120.00022 * 180.02562 * 12 11 9 30 30 H 1.07993 * 125.03564 * 180.25972 * 17 7 6 31 31 H 1.09000 * 109.47571 * 97.00983 * 19 18 17 32 32 H 1.08998 * 109.46928 * 217.01002 * 19 18 17 33 33 H 1.09005 * 109.47111 * 337.00722 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1919 0.0000 4 6 3.5861 1.2054 -0.0005 5 6 4.2917 0.0349 -0.0016 6 6 3.6117 -1.1842 0.0046 7 6 4.0352 -2.5864 -0.0010 8 6 5.4542 -3.0943 -0.0010 9 6 5.9689 -3.1467 1.4144 10 1 5.3322 -2.8431 2.2321 11 6 7.2507 -3.5881 1.6659 12 7 7.6981 -3.6390 2.9015 13 14 8.3518 -4.1139 0.2515 14 1 9.1185 -2.9415 -0.2413 15 1 9.2950 -5.1603 0.7211 16 1 7.5172 -4.6580 -0.8498 17 6 2.9199 -3.3334 -0.0003 18 7 1.8165 -2.5242 -0.0001 19 6 0.4287 -2.9935 0.0012 20 6 2.2047 -1.2032 -0.0012 21 1 -0.3633 -0.1265 1.0198 22 1 -0.3633 0.9465 -0.4004 23 1 -0.3634 -0.8199 -0.6195 24 1 1.6548 2.1251 0.0008 25 1 4.1127 2.1482 -0.0001 26 1 5.3715 0.0530 -0.0025 27 1 6.0798 -2.4243 -0.5906 28 1 5.4823 -4.0938 -0.4351 29 1 8.6000 -3.9491 3.0785 30 1 2.8968 -4.4131 0.0003 31 1 0.0449 -2.9904 1.0214 32 1 -0.1787 -2.3329 -0.6175 33 1 0.3873 -4.0063 -0.3996 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082589001.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:09 Heat of formation + Delta-G solvation = 55.641752 kcal Electronic energy + Delta-G solvation = -15335.136066 eV Core-core repulsion = 12940.144014 eV Total energy + Delta-G solvation = -2394.992053 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.82404 -36.72671 -34.18071 -32.60627 -31.04512 -29.56748 -28.07645 -26.71327 -24.85587 -22.34948 -21.50069 -20.92187 -18.17041 -16.66823 -16.14997 -15.88281 -15.08637 -14.86343 -14.12778 -13.97625 -13.30304 -13.04488 -12.87560 -12.66043 -12.46597 -12.33892 -11.86004 -11.66302 -11.40980 -10.88634 -10.72296 -10.59827 -10.34424 -10.06589 -9.87393 -9.28964 -8.64424 -8.49026 -7.60364 -6.77264 -5.98217 -3.95516 1.65331 2.14252 3.30244 3.34406 3.40839 3.42386 3.44970 4.42781 4.49118 4.88936 5.06618 5.16116 5.30408 5.34111 5.40498 5.47132 5.49162 5.62175 5.71340 5.89026 6.03637 6.10302 6.27109 6.40957 6.56045 6.70211 6.94667 7.07278 7.16196 7.30835 7.41650 7.57479 7.78946 7.86040 7.93786 8.63403 9.09568 9.63074 11.15193 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.033105 B = 0.007547 C = 0.006695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.578622 B = 3709.244669 C = 4181.429673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.111 4.111 3 C -0.108 4.108 4 C -0.161 4.161 5 C -0.056 4.056 6 C -0.097 4.097 7 C -0.104 4.104 8 C 0.048 3.952 9 C -0.506 4.506 10 H 0.072 0.928 11 C 0.066 3.934 12 N -0.904 5.904 13 Si 0.876 3.124 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.265 1.265 17 C 0.015 3.985 18 N -0.493 5.493 19 C 0.078 3.922 20 C 0.098 3.902 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.123 0.877 27 H 0.021 0.979 28 H 0.024 0.976 29 H 0.262 0.738 30 H 0.162 0.838 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.871 4.944 -7.734 16.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.114 4.114 3 C -0.127 4.127 4 C -0.181 4.181 5 C -0.074 4.074 6 C -0.102 4.102 7 C -0.110 4.110 8 C 0.010 3.990 9 C -0.544 4.544 10 H 0.090 0.910 11 C -0.134 4.134 12 N -0.543 5.543 13 Si 0.704 3.296 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.189 1.189 17 C -0.107 4.107 18 N -0.178 5.178 19 C -0.064 4.064 20 C -0.008 4.008 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.133 0.867 25 H 0.133 0.867 26 H 0.141 0.859 27 H 0.040 0.960 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.179 0.821 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.039 4.710 -7.625 16.656 hybrid contribution 0.653 -0.378 -0.429 0.868 sum -13.385 4.332 -8.054 16.211 Atomic orbital electron populations 1.20868 0.92201 1.02125 1.01578 1.18687 0.94692 0.90401 1.07597 1.20536 0.94136 0.95773 1.02228 1.20489 0.93834 0.97591 1.06149 1.20378 0.99919 0.90512 0.96602 1.19223 0.91374 0.93911 1.05681 1.20757 0.96054 0.90007 1.04174 1.18160 0.87383 0.95420 0.98017 1.21024 0.98752 1.43257 0.91338 0.91005 1.25003 0.97752 0.95301 0.95379 1.69912 1.17525 1.47973 1.18918 0.86830 0.80801 0.78770 0.83243 1.20222 1.21424 1.18949 1.21499 0.84469 0.95960 1.08751 1.43568 1.05543 1.03780 1.64920 1.22033 0.81212 1.00777 1.02358 1.18057 0.93693 0.84304 1.04746 0.91987 0.91863 0.91974 0.86684 0.86680 0.85893 0.96037 0.95757 0.92793 0.82113 0.92041 0.90300 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 9.30 36.01 0.33 -0.96 16 2 C -0.11 -1.76 5.89 -104.47 -0.62 -2.37 16 3 C -0.11 -1.64 9.64 -39.54 -0.38 -2.02 16 4 C -0.16 -2.66 9.97 -39.95 -0.40 -3.06 16 5 C -0.06 -1.09 10.05 -39.65 -0.40 -1.49 16 6 C -0.10 -2.06 6.35 -105.14 -0.67 -2.73 16 7 C -0.10 -2.32 5.51 -102.71 -0.57 -2.89 16 8 C 0.05 1.19 4.57 -29.03 -0.13 1.06 16 9 C -0.51 -14.74 9.65 -34.44 -0.33 -15.07 16 10 H 0.07 2.32 7.98 -52.49 -0.42 1.90 16 11 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 12 N -0.90 -28.22 13.96 55.43 0.77 -27.44 16 13 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 17 C 0.01 0.28 11.19 -16.73 -0.19 0.09 16 18 N -0.49 -8.39 3.18 -121.81 -0.39 -8.78 16 19 C 0.08 0.91 10.31 59.84 0.62 1.52 16 20 C 0.10 1.83 6.74 -83.99 -0.57 1.27 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.06 0.62 8.03 -51.93 -0.42 0.20 16 23 H 0.06 0.65 5.08 -51.93 -0.26 0.39 16 24 H 0.12 1.39 8.05 -52.49 -0.42 0.97 16 25 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 26 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 27 H 0.02 0.53 7.58 -51.93 -0.39 0.14 16 28 H 0.02 0.59 7.19 -51.93 -0.37 0.21 16 29 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.16 2.68 8.06 -52.49 -0.42 2.26 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.78 5.18 -51.93 -0.27 0.51 16 33 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16 LS Contribution 275.97 15.07 4.16 4.16 Total: -1.00 -33.07 275.97 -7.78 -40.84 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -4.26 Total: -1.06 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -3.39 Total: -24.79 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.39 Total: -36.22 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -33.07 -7.78 -40.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082589001.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.486 kcal (2) G-P(sol) polarization free energy of solvation -33.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds