Wall clock time and date at job start Mon Mar 30 2020 02:51:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 C 1.37784 * 120.11251 * 2 1
4 4 C 1.38791 * 120.66810 * 180.02562 * 3 2 1
5 5 C 1.36664 * 120.52560 * 0.02754 * 4 3 2
6 6 C 1.39593 * 119.76456 * 359.67681 * 5 4 3
7 7 C 1.46487 * 134.03646 * 179.64673 * 6 5 4
8 8 C 1.50708 * 126.50159 * 0.73250 * 7 6 5
9 9 C 1.50701 * 109.47168 * 84.71301 * 8 7 6
10 10 H 1.07992 * 119.99803 * 0.02562 * 9 8 7
11 11 C 1.37874 * 119.99907 * 179.72836 * 9 8 7
12 12 N 1.31513 * 119.99944 * 180.27474 * 11 9 8
13 13 Si 1.86802 * 119.99865 * 0.27501 * 11 9 8
14 14 H 1.48500 * 109.47489 * 90.00319 * 13 11 9
15 15 H 1.48500 * 109.46878 * 210.00055 * 13 11 9
16 16 H 1.48500 * 109.47187 * 329.99873 * 13 11 9
17 17 C 1.34239 * 107.00426 * 180.47107 * 7 6 5
18 18 N 1.36835 * 109.93304 * 0.23893 * 17 7 6
19 19 C 1.46496 * 125.06289 * 180.02562 * 18 17 7
20 20 C 1.37693 * 109.87702 * 0.02562 * 18 17 7
21 21 H 1.08995 * 109.47172 * 262.92861 * 1 2 3
22 22 H 1.09002 * 109.46974 * 22.92833 * 1 2 3
23 23 H 1.09000 * 109.47348 * 142.92624 * 1 2 3
24 24 H 1.07997 * 119.67221 * 0.04726 * 3 2 1
25 25 H 1.07996 * 119.73759 * 180.02562 * 4 3 2
26 26 H 1.07997 * 120.11960 * 179.97438 * 5 4 3
27 27 H 1.09000 * 109.46601 * 324.71227 * 8 7 6
28 28 H 1.09005 * 109.47171 * 204.71657 * 8 7 6
29 29 H 0.97002 * 120.00022 * 180.02562 * 12 11 9
30 30 H 1.07993 * 125.03564 * 180.25972 * 17 7 6
31 31 H 1.09000 * 109.47571 * 97.00983 * 19 18 17
32 32 H 1.08998 * 109.46928 * 217.01002 * 19 18 17
33 33 H 1.09005 * 109.47111 * 337.00722 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1983 1.1919 0.0000
4 6 3.5861 1.2054 -0.0005
5 6 4.2917 0.0349 -0.0016
6 6 3.6117 -1.1842 0.0046
7 6 4.0352 -2.5864 -0.0010
8 6 5.4542 -3.0943 -0.0010
9 6 5.9689 -3.1467 1.4144
10 1 5.3322 -2.8431 2.2321
11 6 7.2507 -3.5881 1.6659
12 7 7.6981 -3.6390 2.9015
13 14 8.3518 -4.1139 0.2515
14 1 9.1185 -2.9415 -0.2413
15 1 9.2950 -5.1603 0.7211
16 1 7.5172 -4.6580 -0.8498
17 6 2.9199 -3.3334 -0.0003
18 7 1.8165 -2.5242 -0.0001
19 6 0.4287 -2.9935 0.0012
20 6 2.2047 -1.2032 -0.0012
21 1 -0.3633 -0.1265 1.0198
22 1 -0.3633 0.9465 -0.4004
23 1 -0.3634 -0.8199 -0.6195
24 1 1.6548 2.1251 0.0008
25 1 4.1127 2.1482 -0.0001
26 1 5.3715 0.0530 -0.0025
27 1 6.0798 -2.4243 -0.5906
28 1 5.4823 -4.0938 -0.4351
29 1 8.6000 -3.9491 3.0785
30 1 2.8968 -4.4131 0.0003
31 1 0.0449 -2.9904 1.0214
32 1 -0.1787 -2.3329 -0.6175
33 1 0.3873 -4.0063 -0.3996
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000082589001.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:51:09
Heat of formation + Delta-G solvation = 55.641752 kcal
Electronic energy + Delta-G solvation = -15335.136066 eV
Core-core repulsion = 12940.144014 eV
Total energy + Delta-G solvation = -2394.992053 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 229.116 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.82404 -36.72671 -34.18071 -32.60627 -31.04512 -29.56748 -28.07645 -26.71327
-24.85587 -22.34948 -21.50069 -20.92187 -18.17041 -16.66823 -16.14997 -15.88281
-15.08637 -14.86343 -14.12778 -13.97625 -13.30304 -13.04488 -12.87560 -12.66043
-12.46597 -12.33892 -11.86004 -11.66302 -11.40980 -10.88634 -10.72296 -10.59827
-10.34424 -10.06589 -9.87393 -9.28964 -8.64424 -8.49026 -7.60364 -6.77264
-5.98217 -3.95516 1.65331 2.14252 3.30244 3.34406 3.40839 3.42386
3.44970 4.42781 4.49118 4.88936 5.06618 5.16116 5.30408 5.34111
5.40498 5.47132 5.49162 5.62175 5.71340 5.89026 6.03637 6.10302
6.27109 6.40957 6.56045 6.70211 6.94667 7.07278 7.16196 7.30835
7.41650 7.57479 7.78946 7.86040 7.93786 8.63403 9.09568 9.63074
11.15193
Molecular weight = 229.12amu
Principal moments of inertia in cm(-1)
A = 0.033105 B = 0.007547 C = 0.006695
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 845.578622 B = 3709.244669 C = 4181.429673
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.111 4.111
2 C -0.111 4.111
3 C -0.108 4.108
4 C -0.161 4.161
5 C -0.056 4.056
6 C -0.097 4.097
7 C -0.104 4.104
8 C 0.048 3.952
9 C -0.506 4.506
10 H 0.072 0.928
11 C 0.066 3.934
12 N -0.904 5.904
13 Si 0.876 3.124
14 H -0.276 1.276
15 H -0.288 1.288
16 H -0.265 1.265
17 C 0.015 3.985
18 N -0.493 5.493
19 C 0.078 3.922
20 C 0.098 3.902
21 H 0.061 0.939
22 H 0.062 0.938
23 H 0.062 0.938
24 H 0.115 0.885
25 H 0.115 0.885
26 H 0.123 0.877
27 H 0.021 0.979
28 H 0.024 0.976
29 H 0.262 0.738
30 H 0.162 0.838
31 H 0.061 0.939
32 H 0.079 0.921
33 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.871 4.944 -7.734 16.633
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C -0.114 4.114
3 C -0.127 4.127
4 C -0.181 4.181
5 C -0.074 4.074
6 C -0.102 4.102
7 C -0.110 4.110
8 C 0.010 3.990
9 C -0.544 4.544
10 H 0.090 0.910
11 C -0.134 4.134
12 N -0.543 5.543
13 Si 0.704 3.296
14 H -0.202 1.202
15 H -0.214 1.214
16 H -0.189 1.189
17 C -0.107 4.107
18 N -0.178 5.178
19 C -0.064 4.064
20 C -0.008 4.008
21 H 0.080 0.920
22 H 0.081 0.919
23 H 0.080 0.920
24 H 0.133 0.867
25 H 0.133 0.867
26 H 0.141 0.859
27 H 0.040 0.960
28 H 0.042 0.958
29 H 0.072 0.928
30 H 0.179 0.821
31 H 0.080 0.920
32 H 0.097 0.903
33 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -14.039 4.710 -7.625 16.656
hybrid contribution 0.653 -0.378 -0.429 0.868
sum -13.385 4.332 -8.054 16.211
Atomic orbital electron populations
1.20868 0.92201 1.02125 1.01578 1.18687 0.94692 0.90401 1.07597
1.20536 0.94136 0.95773 1.02228 1.20489 0.93834 0.97591 1.06149
1.20378 0.99919 0.90512 0.96602 1.19223 0.91374 0.93911 1.05681
1.20757 0.96054 0.90007 1.04174 1.18160 0.87383 0.95420 0.98017
1.21024 0.98752 1.43257 0.91338 0.91005 1.25003 0.97752 0.95301
0.95379 1.69912 1.17525 1.47973 1.18918 0.86830 0.80801 0.78770
0.83243 1.20222 1.21424 1.18949 1.21499 0.84469 0.95960 1.08751
1.43568 1.05543 1.03780 1.64920 1.22033 0.81212 1.00777 1.02358
1.18057 0.93693 0.84304 1.04746 0.91987 0.91863 0.91974 0.86684
0.86680 0.85893 0.96037 0.95757 0.92793 0.82113 0.92041 0.90300
0.90380
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.29 9.30 36.01 0.33 -0.96 16
2 C -0.11 -1.76 5.89 -104.47 -0.62 -2.37 16
3 C -0.11 -1.64 9.64 -39.54 -0.38 -2.02 16
4 C -0.16 -2.66 9.97 -39.95 -0.40 -3.06 16
5 C -0.06 -1.09 10.05 -39.65 -0.40 -1.49 16
6 C -0.10 -2.06 6.35 -105.14 -0.67 -2.73 16
7 C -0.10 -2.32 5.51 -102.71 -0.57 -2.89 16
8 C 0.05 1.19 4.57 -29.03 -0.13 1.06 16
9 C -0.51 -14.74 9.65 -34.44 -0.33 -15.07 16
10 H 0.07 2.32 7.98 -52.49 -0.42 1.90 16
11 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16
12 N -0.90 -28.22 13.96 55.43 0.77 -27.44 16
13 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16
14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16
16 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16
17 C 0.01 0.28 11.19 -16.73 -0.19 0.09 16
18 N -0.49 -8.39 3.18 -121.81 -0.39 -8.78 16
19 C 0.08 0.91 10.31 59.84 0.62 1.52 16
20 C 0.10 1.83 6.74 -83.99 -0.57 1.27 16
21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
22 H 0.06 0.62 8.03 -51.93 -0.42 0.20 16
23 H 0.06 0.65 5.08 -51.93 -0.26 0.39 16
24 H 0.12 1.39 8.05 -52.49 -0.42 0.97 16
25 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16
26 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16
27 H 0.02 0.53 7.58 -51.93 -0.39 0.14 16
28 H 0.02 0.59 7.19 -51.93 -0.37 0.21 16
29 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16
30 H 0.16 2.68 8.06 -52.49 -0.42 2.26 16
31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
32 H 0.08 0.78 5.18 -51.93 -0.27 0.51 16
33 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16
LS Contribution 275.97 15.07 4.16 4.16
Total: -1.00 -33.07 275.97 -7.78 -40.84
By element:
Atomic # 1 Polarization: 3.20 SS G_CDS: -4.26 Total: -1.06 kcal
Atomic # 6 Polarization: -21.40 SS G_CDS: -3.39 Total: -24.79 kcal
Atomic # 7 Polarization: -36.61 SS G_CDS: 0.39 Total: -36.22 kcal
Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal
Total LS contribution 4.16 Total: 4.16 kcal
Total: -33.07 -7.78 -40.84 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000082589001.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 96.486 kcal
(2) G-P(sol) polarization free energy of solvation -33.069 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.417 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal
(6) G-S(sol) free energy of system = (1) + (5) 55.642 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds