Wall clock time and date at job start Mon Mar 30 2020 02:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37784 * 120.11251 * 2 1 4 4 C 1.38791 * 120.66810 * 180.02562 * 3 2 1 5 5 C 1.36664 * 120.52560 * 0.02754 * 4 3 2 6 6 C 1.39593 * 119.76456 * 359.67681 * 5 4 3 7 7 C 1.46487 * 134.03646 * 179.64673 * 6 5 4 8 8 C 1.50708 * 126.50159 * 0.73250 * 7 6 5 9 9 C 1.50701 * 109.47168 * 84.71301 * 8 7 6 10 10 H 1.07992 * 119.99803 * 0.02562 * 9 8 7 11 11 C 1.37874 * 119.99907 * 179.72836 * 9 8 7 12 12 N 1.31513 * 119.99944 * 180.27474 * 11 9 8 13 13 Si 1.86802 * 119.99865 * 0.27501 * 11 9 8 14 14 H 1.48500 * 109.47489 * 90.00319 * 13 11 9 15 15 H 1.48500 * 109.46878 * 210.00055 * 13 11 9 16 16 H 1.48500 * 109.47187 * 329.99873 * 13 11 9 17 17 C 1.34239 * 107.00426 * 180.47107 * 7 6 5 18 18 N 1.36835 * 109.93304 * 0.23893 * 17 7 6 19 19 C 1.46496 * 125.06289 * 180.02562 * 18 17 7 20 20 C 1.37693 * 109.87702 * 0.02562 * 18 17 7 21 21 H 1.08995 * 109.47172 * 262.92861 * 1 2 3 22 22 H 1.09002 * 109.46974 * 22.92833 * 1 2 3 23 23 H 1.09000 * 109.47348 * 142.92624 * 1 2 3 24 24 H 1.07997 * 119.67221 * 0.04726 * 3 2 1 25 25 H 1.07996 * 119.73759 * 180.02562 * 4 3 2 26 26 H 1.07997 * 120.11960 * 179.97438 * 5 4 3 27 27 H 1.09000 * 109.46601 * 324.71227 * 8 7 6 28 28 H 1.09005 * 109.47171 * 204.71657 * 8 7 6 29 29 H 0.97002 * 120.00022 * 180.02562 * 12 11 9 30 30 H 1.07993 * 125.03564 * 180.25972 * 17 7 6 31 31 H 1.09000 * 109.47571 * 97.00983 * 19 18 17 32 32 H 1.08998 * 109.46928 * 217.01002 * 19 18 17 33 33 H 1.09005 * 109.47111 * 337.00722 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1919 0.0000 4 6 3.5861 1.2054 -0.0005 5 6 4.2917 0.0349 -0.0016 6 6 3.6117 -1.1842 0.0046 7 6 4.0352 -2.5864 -0.0010 8 6 5.4542 -3.0943 -0.0010 9 6 5.9689 -3.1467 1.4144 10 1 5.3322 -2.8431 2.2321 11 6 7.2507 -3.5881 1.6659 12 7 7.6981 -3.6390 2.9015 13 14 8.3518 -4.1139 0.2515 14 1 9.1185 -2.9415 -0.2413 15 1 9.2950 -5.1603 0.7211 16 1 7.5172 -4.6580 -0.8498 17 6 2.9199 -3.3334 -0.0003 18 7 1.8165 -2.5242 -0.0001 19 6 0.4287 -2.9935 0.0012 20 6 2.2047 -1.2032 -0.0012 21 1 -0.3633 -0.1265 1.0198 22 1 -0.3633 0.9465 -0.4004 23 1 -0.3634 -0.8199 -0.6195 24 1 1.6548 2.1251 0.0008 25 1 4.1127 2.1482 -0.0001 26 1 5.3715 0.0530 -0.0025 27 1 6.0798 -2.4243 -0.5906 28 1 5.4823 -4.0938 -0.4351 29 1 8.6000 -3.9491 3.0785 30 1 2.8968 -4.4131 0.0003 31 1 0.0449 -2.9904 1.0214 32 1 -0.1787 -2.3329 -0.6175 33 1 0.3873 -4.0063 -0.3996 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082589001.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:08 Heat of formation + Delta-G solvation = 36.116669 kcal Electronic energy + Delta-G solvation = -15335.982737 eV Core-core repulsion = 12940.144014 eV Total energy + Delta-G solvation = -2395.838724 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.18062 -38.01967 -35.81706 -34.46291 -32.52234 -31.11717 -29.45697 -28.07783 -26.16640 -24.21632 -22.85140 -22.27583 -19.68338 -18.92333 -17.49505 -17.19210 -16.33293 -16.22510 -16.07070 -15.15918 -14.83720 -14.28696 -14.19211 -14.06382 -13.94842 -13.84968 -13.22140 -13.17833 -12.76609 -12.43195 -12.34468 -12.01320 -11.92946 -11.71756 -11.60656 -11.40151 -10.76208 -10.08167 -8.97975 -8.28515 -8.17684 -6.30565 0.29574 0.79968 1.36798 1.38334 1.51042 1.90190 2.07950 2.37409 3.04453 3.07059 3.87561 3.94477 4.03858 4.17080 4.23869 4.37532 4.53371 4.62111 4.68240 4.78758 4.80269 4.87742 4.97067 5.06632 5.12952 5.19434 5.30707 5.52869 5.60736 5.73041 5.81117 5.98643 6.05758 6.33621 6.42575 6.61218 6.75871 7.32276 8.90326 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.033105 B = 0.007547 C = 0.006695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.578622 B = 3709.244669 C = 4181.429673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.106 4.106 3 C -0.110 4.110 4 C -0.152 4.152 5 C -0.099 4.099 6 C -0.136 4.136 7 C -0.166 4.166 8 C 0.060 3.940 9 C -0.512 4.512 10 H 0.019 0.981 11 C 0.005 3.995 12 N -0.953 5.953 13 Si 0.952 3.048 14 H -0.269 1.269 15 H -0.280 1.280 16 H -0.244 1.244 17 C 0.032 3.968 18 N -0.488 5.488 19 C 0.068 3.932 20 C 0.081 3.919 21 H 0.071 0.929 22 H 0.088 0.912 23 H 0.075 0.925 24 H 0.156 0.844 25 H 0.140 0.860 26 H 0.102 0.898 27 H 0.016 0.984 28 H 0.032 0.968 29 H 0.266 0.734 30 H 0.184 0.816 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.326 5.380 -9.542 19.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.109 4.109 3 C -0.129 4.129 4 C -0.171 4.171 5 C -0.117 4.117 6 C -0.140 4.140 7 C -0.172 4.172 8 C 0.022 3.978 9 C -0.550 4.550 10 H 0.037 0.963 11 C -0.191 4.191 12 N -0.594 5.594 13 Si 0.775 3.225 14 H -0.194 1.194 15 H -0.206 1.206 16 H -0.167 1.167 17 C -0.092 4.092 18 N -0.172 5.172 19 C -0.071 4.071 20 C -0.026 4.026 21 H 0.090 0.910 22 H 0.107 0.893 23 H 0.094 0.906 24 H 0.174 0.826 25 H 0.158 0.842 26 H 0.120 0.880 27 H 0.034 0.966 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.201 0.799 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.547 5.158 -9.441 19.737 hybrid contribution 1.274 -0.431 0.218 1.363 sum -15.272 4.727 -9.223 18.457 Atomic orbital electron populations 1.20953 0.88646 1.04207 1.02691 1.19272 0.97261 0.89296 1.05063 1.21036 0.93576 0.97398 1.00880 1.20839 0.94972 0.97317 1.03950 1.20447 0.99341 0.91837 1.00122 1.19526 0.93470 0.93786 1.07266 1.20685 0.95709 0.91762 1.09082 1.17897 0.89396 0.95693 0.94800 1.21223 0.98512 1.42852 0.92438 0.96273 1.26002 0.99410 0.95193 0.98524 1.70076 1.18311 1.49413 1.21629 0.85631 0.78528 0.78665 0.79675 1.19381 1.20575 1.16719 1.21776 0.84605 0.96926 1.05924 1.43845 1.07002 1.03017 1.63325 1.22438 0.78271 1.02612 1.03816 1.18394 0.92869 0.85915 1.05426 0.91000 0.89330 0.90614 0.82600 0.84178 0.88027 0.96563 0.94937 0.92480 0.79897 0.90943 0.88004 0.88060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 9.30 71.24 0.66 -1.36 16 2 C -0.11 -3.08 5.89 -19.77 -0.12 -3.19 16 3 C -0.11 -3.04 9.64 22.29 0.22 -2.82 16 4 C -0.15 -4.91 9.97 22.03 0.22 -4.69 16 5 C -0.10 -4.08 10.05 22.23 0.22 -3.86 16 6 C -0.14 -5.98 6.35 -20.20 -0.13 -6.11 16 7 C -0.17 -7.72 5.51 -18.62 -0.10 -7.83 16 8 C 0.06 3.09 4.57 29.10 0.13 3.23 16 9 C -0.51 -31.56 9.65 25.60 0.25 -31.32 16 10 H 0.02 1.33 7.98 -2.91 -0.02 1.30 16 11 C 0.00 0.30 5.47 84.65 0.46 0.76 16 12 N -0.95 -62.00 13.96 21.45 0.30 -61.70 16 13 Si 0.95 45.74 27.47 68.60 1.88 47.62 16 14 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 15 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 16 H -0.24 -10.80 6.54 99.48 0.65 -10.15 16 17 C 0.03 1.21 11.19 83.00 0.93 2.14 16 18 N -0.49 -15.86 3.18 -539.28 -1.71 -17.57 16 19 C 0.07 1.34 10.31 127.77 1.32 2.66 16 20 C 0.08 2.94 6.74 39.03 0.26 3.20 16 21 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 22 H 0.09 1.24 8.03 -2.39 -0.02 1.22 16 23 H 0.08 1.21 5.08 -2.39 -0.01 1.20 16 24 H 0.16 3.01 8.05 -2.91 -0.02 2.98 16 25 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 26 H 0.10 4.40 8.06 -2.91 -0.02 4.37 16 27 H 0.02 0.83 7.58 -2.39 -0.02 0.81 16 28 H 0.03 1.58 7.19 -2.38 -0.02 1.56 16 29 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 30 H 0.18 5.91 8.06 -2.91 -0.02 5.88 16 31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.10 1.55 5.18 -2.39 -0.01 1.54 16 33 H 0.10 1.54 8.11 -2.38 -0.02 1.53 16 Total: -1.00 -77.05 275.97 5.83 -71.22 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 1.04 Total: 9.62 kcal Atomic # 6 Polarization: -53.52 SS G_CDS: 4.33 Total: -49.19 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -1.41 Total: -79.27 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.88 Total: 47.62 kcal Total: -77.05 5.83 -71.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082589001.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.337 kcal (2) G-P(sol) polarization free energy of solvation -77.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds