Wall clock time and date at job start Mon Mar 30 2020 03:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47102 * 2 1 4 4 N 1.46904 * 109.46801 * 240.00732 * 2 1 3 5 5 C 1.52995 * 109.47334 * 120.00615 * 2 1 3 6 6 S 1.81397 * 109.47286 * 59.99830 * 5 2 1 7 7 C 1.81403 * 102.99882 * 180.02562 * 6 5 2 8 8 C 1.53000 * 109.47144 * 180.02562 * 7 6 5 9 9 C 1.50704 * 115.54769 * 294.73865 * 8 7 6 10 10 H 1.07999 * 120.00523 * 99.48502 * 9 8 7 11 11 C 1.37881 * 119.99579 * 279.20614 * 9 8 7 12 12 N 1.31514 * 120.00444 * 355.36234 * 11 9 8 13 13 Si 1.86804 * 119.99919 * 175.35926 * 11 9 8 14 14 H 1.48498 * 109.47058 * 60.00286 * 13 11 9 15 15 H 1.48496 * 109.47120 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46819 * 300.00125 * 13 11 9 17 17 C 1.53003 * 117.52066 * 80.43586 * 8 7 6 18 18 C 1.52993 * 117.50274 * 149.06862 * 8 7 6 19 19 H 1.09008 * 109.46641 * 299.99444 * 1 2 3 20 20 H 1.08994 * 109.47379 * 59.99395 * 1 2 3 21 21 H 1.08998 * 109.47007 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.47193 * 180.02562 * 3 2 1 23 23 H 1.09000 * 109.47832 * 300.00243 * 3 2 1 24 24 H 1.09005 * 109.47417 * 60.00712 * 3 2 1 25 25 H 1.00898 * 111.00398 * 56.04325 * 4 2 1 26 26 H 1.00900 * 111.00245 * 180.02562 * 4 2 1 27 27 H 1.08996 * 109.47121 * 299.99231 * 5 2 1 28 28 H 1.09006 * 109.47015 * 179.97438 * 5 2 1 29 29 H 1.09003 * 109.47246 * 60.00125 * 7 6 5 30 30 H 1.09003 * 109.46997 * 299.99681 * 7 6 5 31 31 H 0.96998 * 120.00274 * 184.99867 * 12 11 9 32 32 H 1.09003 * 117.49776 * 214.97282 * 17 8 7 33 33 H 1.08994 * 117.49517 * 359.97438 * 17 8 7 34 34 H 1.09005 * 117.49876 * 359.97234 * 18 8 7 35 35 H 1.08998 * 117.50319 * 144.97353 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 -1.1996 5 6 2.0400 -0.7213 1.2491 6 16 1.4354 -2.4316 1.2490 7 6 2.1321 -3.1107 2.7801 8 6 1.7071 -4.5730 2.9291 9 6 0.2302 -4.8044 3.1195 10 1 -0.3826 -5.1009 2.2811 11 6 -0.3378 -4.6431 4.3655 12 7 0.4222 -4.3768 5.4052 13 14 -2.1870 -4.8026 4.5768 14 1 -2.6175 -6.1612 4.1595 15 1 -2.5428 -4.5861 6.0021 16 1 -2.8706 -3.7867 3.7366 17 6 2.4898 -5.6211 2.1354 18 6 2.6691 -5.5182 3.6514 19 1 -0.3633 0.5138 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 3.1300 1.4425 -0.0005 23 1 1.6767 1.9564 -0.8899 24 1 1.6768 1.9563 0.8901 25 1 1.6441 -0.2738 -2.0373 26 1 3.0282 -0.7062 -1.2228 27 1 1.6769 -0.2076 2.1391 28 1 3.1301 -0.7217 1.2488 29 1 1.7661 -2.5371 3.6316 30 1 3.2198 -3.0510 2.7421 31 1 0.0329 -4.3350 6.2927 32 1 1.9364 -6.4779 1.7510 33 1 3.3074 -5.2689 1.5065 34 1 3.6051 -5.0985 4.0201 35 1 2.2339 -6.3072 4.2646 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085350689.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:02 Heat of formation + Delta-G solvation = 8.321231 kcal Electronic energy + Delta-G solvation = -14198.668735 eV Core-core repulsion = 11937.068662 eV Total energy + Delta-G solvation = -2261.600073 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.43945 -36.44134 -31.86434 -29.62735 -27.81538 -27.26229 -26.90781 -25.17461 -21.00741 -19.64410 -18.91871 -16.24063 -15.65833 -15.44998 -14.60939 -14.52688 -14.21938 -13.70080 -13.22289 -13.01490 -12.69816 -12.22641 -11.97025 -11.74777 -11.69895 -11.30559 -10.99757 -10.86545 -10.83975 -10.78828 -10.40276 -10.07709 -9.42807 -9.08855 -8.80585 -8.49797 -8.36479 -7.87236 -6.49320 -5.95677 -4.01197 2.58665 3.37208 3.40585 3.45528 3.73997 4.47751 4.58007 4.81947 5.05696 5.18633 5.32834 5.48836 5.49228 5.59211 5.86697 5.88362 5.98950 6.06871 6.08518 6.14618 6.32221 6.50642 6.60048 6.64696 6.83934 6.92480 7.16019 7.28750 7.49348 7.58074 7.60079 7.96466 8.49512 8.99490 9.63694 11.12491 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.027812 B = 0.007968 C = 0.006871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.529694 B = 3513.021992 C = 4073.881397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.133 3.867 3 C -0.177 4.177 4 N -0.826 5.826 5 C -0.095 4.095 6 S -0.200 6.200 7 C -0.042 4.042 8 C 0.058 3.942 9 C -0.482 4.482 10 H 0.061 0.939 11 C 0.071 3.929 12 N -0.885 5.885 13 Si 0.889 3.111 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.274 1.274 17 C -0.204 4.204 18 C -0.151 4.151 19 H 0.058 0.942 20 H 0.047 0.953 21 H 0.083 0.917 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.336 0.664 26 H 0.338 0.662 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.259 0.741 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.577 9.223 -8.422 12.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.039 3.961 3 C -0.238 4.238 4 N -0.356 5.356 5 C -0.244 4.244 6 S 0.029 5.971 7 C -0.190 4.190 8 C 0.057 3.943 9 C -0.520 4.520 10 H 0.079 0.921 11 C -0.132 4.132 12 N -0.522 5.522 13 Si 0.716 3.284 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.199 1.199 17 C -0.242 4.242 18 C -0.191 4.191 19 H 0.077 0.923 20 H 0.066 0.934 21 H 0.102 0.898 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.148 0.852 26 H 0.151 0.849 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.535 8.196 -8.680 12.204 hybrid contribution 0.402 1.553 1.097 1.944 sum 2.937 9.748 -7.583 12.695 Atomic orbital electron populations 1.21874 0.93158 1.04055 1.00870 1.20467 0.95914 0.89861 0.89854 1.22655 1.01042 0.97835 1.02257 1.58795 1.13515 1.59912 1.03368 1.23444 1.02184 0.99306 0.99492 1.87053 1.70936 1.07138 1.31962 1.23108 0.98249 1.01447 0.96221 1.18394 0.93176 0.84642 0.98107 1.20359 0.90542 1.46366 0.94706 0.92079 1.24950 0.97656 0.94543 0.96002 1.69983 1.35141 1.48544 0.98542 0.86708 0.86074 0.78742 0.76844 1.20317 1.21468 1.19906 1.22963 1.03331 1.03709 0.94148 1.22580 0.99644 1.04296 0.92581 0.92283 0.93374 0.89848 0.92838 0.92579 0.92017 0.85168 0.84909 0.90809 0.91759 0.90540 0.93903 0.93121 0.90431 0.91465 0.92148 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.50 37.16 0.32 -1.63 16 2 C 0.13 1.73 0.91 -131.60 -0.12 1.61 16 3 C -0.18 -1.84 8.76 37.16 0.33 -1.51 16 4 N -0.83 -10.24 8.42 0.74 0.01 -10.23 16 5 C -0.10 -1.52 5.10 37.15 0.19 -1.33 16 6 S -0.20 -4.11 19.54 -107.50 -2.10 -6.21 16 7 C -0.04 -0.96 5.80 37.16 0.22 -0.75 16 8 C 0.06 1.47 1.34 -155.66 -0.21 1.26 16 9 C -0.48 -13.37 8.47 -34.44 -0.29 -13.67 16 10 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 11 C 0.07 1.97 5.44 -17.82 -0.10 1.87 16 12 N -0.88 -25.24 12.85 55.43 0.71 -24.53 16 13 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 17 C -0.20 -4.65 9.96 -26.73 -0.27 -4.91 16 18 C -0.15 -3.63 9.39 -26.73 -0.25 -3.88 16 19 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.08 1.38 6.92 -51.93 -0.36 1.02 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.34 3.46 8.98 -39.29 -0.35 3.11 16 26 H 0.34 3.81 9.00 -39.29 -0.35 3.45 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 29 H 0.08 1.92 8.14 -51.92 -0.42 1.50 16 30 H 0.04 0.92 8.09 -51.92 -0.42 0.50 16 31 H 0.26 7.11 8.32 -40.82 -0.34 6.77 16 32 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 33 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.08 2.14 8.14 -51.93 -0.42 1.71 16 LS Contribution 302.17 15.07 4.55 4.55 Total: -1.00 -28.85 302.17 -8.14 -36.99 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.10 Total: 5.81 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: -0.19 Total: -22.94 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.72 Total: -34.76 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -4.11 SS G_CDS: -2.10 Total: -6.21 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.85 -8.14 -36.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085350689.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.310 kcal (2) G-P(sol) polarization free energy of solvation -28.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds