Wall clock time and date at job start Mon Mar 30 2020 03:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47102 * 2 1 4 4 N 1.46904 * 109.46801 * 240.00732 * 2 1 3 5 5 C 1.52995 * 109.47334 * 120.00615 * 2 1 3 6 6 S 1.81397 * 109.47286 * 59.99830 * 5 2 1 7 7 C 1.81403 * 102.99882 * 180.02562 * 6 5 2 8 8 C 1.53000 * 109.47144 * 180.02562 * 7 6 5 9 9 C 1.50704 * 115.54769 * 294.73865 * 8 7 6 10 10 H 1.07999 * 120.00523 * 99.48502 * 9 8 7 11 11 C 1.37881 * 119.99579 * 279.20614 * 9 8 7 12 12 N 1.31514 * 120.00444 * 355.36234 * 11 9 8 13 13 Si 1.86804 * 119.99919 * 175.35926 * 11 9 8 14 14 H 1.48498 * 109.47058 * 60.00286 * 13 11 9 15 15 H 1.48496 * 109.47120 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46819 * 300.00125 * 13 11 9 17 17 C 1.53003 * 117.52066 * 80.43586 * 8 7 6 18 18 C 1.52993 * 117.50274 * 149.06862 * 8 7 6 19 19 H 1.09008 * 109.46641 * 299.99444 * 1 2 3 20 20 H 1.08994 * 109.47379 * 59.99395 * 1 2 3 21 21 H 1.08998 * 109.47007 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.47193 * 180.02562 * 3 2 1 23 23 H 1.09000 * 109.47832 * 300.00243 * 3 2 1 24 24 H 1.09005 * 109.47417 * 60.00712 * 3 2 1 25 25 H 1.00898 * 111.00398 * 56.04325 * 4 2 1 26 26 H 1.00900 * 111.00245 * 180.02562 * 4 2 1 27 27 H 1.08996 * 109.47121 * 299.99231 * 5 2 1 28 28 H 1.09006 * 109.47015 * 179.97438 * 5 2 1 29 29 H 1.09003 * 109.47246 * 60.00125 * 7 6 5 30 30 H 1.09003 * 109.46997 * 299.99681 * 7 6 5 31 31 H 0.96998 * 120.00274 * 184.99867 * 12 11 9 32 32 H 1.09003 * 117.49776 * 214.97282 * 17 8 7 33 33 H 1.08994 * 117.49517 * 359.97438 * 17 8 7 34 34 H 1.09005 * 117.49876 * 359.97234 * 18 8 7 35 35 H 1.08998 * 117.50319 * 144.97353 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 -1.1996 5 6 2.0400 -0.7213 1.2491 6 16 1.4354 -2.4316 1.2490 7 6 2.1321 -3.1107 2.7801 8 6 1.7071 -4.5730 2.9291 9 6 0.2302 -4.8044 3.1195 10 1 -0.3826 -5.1009 2.2811 11 6 -0.3378 -4.6431 4.3655 12 7 0.4222 -4.3768 5.4052 13 14 -2.1870 -4.8026 4.5768 14 1 -2.6175 -6.1612 4.1595 15 1 -2.5428 -4.5861 6.0021 16 1 -2.8706 -3.7867 3.7366 17 6 2.4898 -5.6211 2.1354 18 6 2.6691 -5.5182 3.6514 19 1 -0.3633 0.5138 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 3.1300 1.4425 -0.0005 23 1 1.6767 1.9564 -0.8899 24 1 1.6768 1.9563 0.8901 25 1 1.6441 -0.2738 -2.0373 26 1 3.0282 -0.7062 -1.2228 27 1 1.6769 -0.2076 2.1391 28 1 3.1301 -0.7217 1.2488 29 1 1.7661 -2.5371 3.6316 30 1 3.2198 -3.0510 2.7421 31 1 0.0329 -4.3350 6.2927 32 1 1.9364 -6.4779 1.7510 33 1 3.3074 -5.2689 1.5065 34 1 3.6051 -5.0985 4.0201 35 1 2.2339 -6.3072 4.2646 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085350689.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:02 Heat of formation + Delta-G solvation = -8.768177 kcal Electronic energy + Delta-G solvation = -14199.409787 eV Core-core repulsion = 11937.068662 eV Total energy + Delta-G solvation = -2262.341125 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.52635 -38.30866 -33.98002 -30.65868 -29.49656 -28.34123 -28.14586 -27.24577 -22.89694 -21.24291 -20.36177 -18.12847 -16.98585 -16.63959 -16.59427 -15.86117 -15.63822 -15.42373 -14.95881 -14.21214 -14.03342 -13.66360 -13.44861 -13.22529 -12.92181 -12.80468 -12.79506 -12.62156 -12.36335 -12.16750 -11.97619 -11.90204 -11.33034 -10.91343 -10.57559 -10.41404 -9.77098 -9.45740 -8.13510 -8.06878 -6.18187 1.05885 1.41640 1.44119 1.50916 2.14268 2.44907 3.20285 3.56943 3.61531 3.76425 3.99493 4.21032 4.24081 4.44547 4.48946 4.64128 4.65161 4.73651 4.74104 4.92704 4.94701 4.98479 5.02579 5.10302 5.19557 5.24892 5.47304 5.60118 5.65705 5.81351 6.37059 6.42293 6.75111 6.85128 7.48815 8.99865 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.027812 B = 0.007968 C = 0.006871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.529694 B = 3513.021992 C = 4073.881397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.136 3.864 3 C -0.168 4.168 4 N -0.839 5.839 5 C -0.084 4.084 6 S -0.228 6.228 7 C -0.033 4.033 8 C 0.031 3.969 9 C -0.495 4.495 10 H 0.046 0.954 11 C 0.028 3.972 12 N -0.909 5.909 13 Si 0.944 3.056 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.273 1.273 17 C -0.182 4.182 18 C -0.154 4.154 19 H 0.057 0.943 20 H 0.070 0.930 21 H 0.050 0.950 22 H 0.062 0.938 23 H 0.074 0.926 24 H 0.061 0.939 25 H 0.349 0.651 26 H 0.346 0.654 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.259 0.741 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.885 10.510 -9.633 14.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.043 3.957 3 C -0.229 4.229 4 N -0.371 5.371 5 C -0.233 4.233 6 S 0.001 5.999 7 C -0.182 4.182 8 C 0.030 3.970 9 C -0.533 4.533 10 H 0.065 0.935 11 C -0.172 4.172 12 N -0.547 5.547 13 Si 0.770 3.230 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.198 1.198 17 C -0.220 4.220 18 C -0.194 4.194 19 H 0.077 0.923 20 H 0.089 0.911 21 H 0.069 0.931 22 H 0.081 0.919 23 H 0.093 0.907 24 H 0.080 0.920 25 H 0.163 0.837 26 H 0.159 0.841 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.846 9.472 -9.902 13.995 hybrid contribution 0.320 1.189 1.410 1.872 sum 3.166 10.660 -8.492 13.992 Atomic orbital electron populations 1.21856 0.93873 1.02213 1.02025 1.20416 0.95333 0.91220 0.88769 1.22546 1.01619 0.95493 1.03219 1.58718 1.14258 1.60421 1.03696 1.23573 1.02825 0.95691 1.01176 1.87079 1.71783 1.11145 1.29935 1.22830 0.98902 0.99946 0.96479 1.18516 0.92332 0.86271 0.99870 1.20542 0.92100 1.46304 0.94371 0.93534 1.25580 1.01360 0.94445 0.95788 1.70075 1.36550 1.49378 0.98724 0.85836 0.81575 0.78750 0.76887 1.19808 1.20874 1.19818 1.22940 1.03034 1.02506 0.93477 1.22498 0.99885 1.03656 0.93322 0.92347 0.91085 0.93068 0.91880 0.90737 0.91962 0.83674 0.84069 0.91099 0.90538 0.93547 0.92592 0.93179 0.90638 0.89232 0.90757 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 8.50 71.98 0.61 -3.06 16 2 C 0.14 3.25 0.91 3.52 0.00 3.25 16 3 C -0.17 -2.92 8.76 71.98 0.63 -2.29 16 4 N -0.84 -18.77 8.42 -151.57 -1.28 -20.04 16 5 C -0.08 -2.54 5.10 71.98 0.37 -2.17 16 6 S -0.23 -9.29 19.54 -56.49 -1.10 -10.40 16 7 C -0.03 -1.53 5.80 71.98 0.42 -1.11 16 8 C 0.03 1.59 1.34 -52.93 -0.07 1.52 16 9 C -0.50 -27.87 8.47 25.60 0.22 -27.66 16 10 H 0.05 2.69 7.82 -2.91 -0.02 2.66 16 11 C 0.03 1.58 5.44 84.66 0.46 2.04 16 12 N -0.91 -52.56 12.85 21.45 0.28 -52.29 16 13 Si 0.94 44.63 29.54 68.60 2.03 46.65 16 14 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 15 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 16 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 17 C -0.18 -8.15 9.96 30.60 0.30 -7.85 16 18 C -0.15 -7.40 9.39 30.59 0.29 -7.11 16 19 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 20 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 21 H 0.05 1.66 6.92 -2.39 -0.02 1.65 16 22 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 23 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.35 6.23 8.98 -89.70 -0.81 5.42 16 26 H 0.35 6.86 9.00 -89.69 -0.81 6.05 16 27 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.06 2.36 8.09 -2.39 -0.02 2.34 16 31 H 0.26 14.37 8.32 -92.71 -0.77 13.60 16 32 H 0.08 3.37 8.14 -2.39 -0.02 3.36 16 33 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 34 H 0.07 3.30 8.14 -2.38 -0.02 3.28 16 35 H 0.06 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -61.58 302.17 2.60 -58.99 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -0.55 Total: 21.52 kcal Atomic # 6 Polarization: -47.66 SS G_CDS: 3.23 Total: -44.44 kcal Atomic # 7 Polarization: -71.33 SS G_CDS: -1.00 Total: -72.33 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: -9.29 SS G_CDS: -1.10 Total: -10.40 kcal Total: -61.58 2.60 -58.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085350689.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.220 kcal (2) G-P(sol) polarization free energy of solvation -61.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds