Wall clock time and date at job start Mon Mar 30 2020 03:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47127 * 2 1 4 4 H 1.08997 * 109.47178 * 185.56726 * 3 2 1 5 5 C 1.50707 * 109.46917 * 305.56828 * 3 2 1 6 6 H 1.08006 * 119.99844 * 116.65635 * 5 3 2 7 7 C 1.37871 * 119.99750 * 296.65137 * 5 3 2 8 8 N 1.31508 * 120.00521 * 352.45232 * 7 5 3 9 9 Si 1.86807 * 119.99799 * 172.45481 * 7 5 3 10 10 H 1.48495 * 109.47092 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47164 * 299.99956 * 9 7 5 12 12 H 1.48505 * 109.46992 * 59.99840 * 9 7 5 13 13 N 1.46899 * 109.47179 * 65.56447 * 3 2 1 14 14 C 1.46904 * 110.99566 * 87.08035 * 13 3 2 15 15 C 1.53009 * 109.46892 * 184.09100 * 14 13 3 16 16 H 1.08994 * 110.35533 * 299.12940 * 15 14 13 17 17 C 1.54272 * 110.39981 * 176.67924 * 15 14 13 18 18 C 1.53858 * 108.92678 * 213.25343 * 17 15 14 19 19 C 1.55140 * 106.89777 * 47.25679 * 18 17 15 20 20 S 1.83096 * 110.39905 * 61.45214 * 15 14 13 21 21 H 1.09003 * 109.47308 * 303.34581 * 1 2 3 22 22 H 1.08998 * 109.47675 * 63.34765 * 1 2 3 23 23 H 1.09004 * 109.47005 * 183.34918 * 1 2 3 24 24 H 1.08999 * 109.46820 * 240.00172 * 2 1 3 25 25 H 1.09002 * 109.47190 * 119.99643 * 2 1 3 26 26 H 0.97001 * 119.99643 * 355.72137 * 8 7 5 27 27 H 1.00899 * 111.00449 * 323.12981 * 13 3 2 28 28 H 1.09001 * 109.46986 * 304.08748 * 14 13 3 29 29 H 1.08996 * 109.47396 * 64.09511 * 14 13 3 30 30 H 1.09000 * 109.61169 * 333.17801 * 17 15 14 31 31 H 1.09002 * 109.60782 * 93.33278 * 17 15 14 32 32 H 1.09003 * 109.97380 * 287.90033 * 18 17 15 33 33 H 1.08994 * 110.00526 * 166.63405 * 18 17 15 34 34 H 1.08999 * 110.85890 * 199.70220 * 19 18 17 35 35 H 1.09003 * 111.03255 * 76.13984 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1254 1.4441 -0.0997 5 6 1.4282 2.1916 -1.1558 6 1 0.7765 3.0325 -0.9699 7 6 1.7006 1.8033 -2.4504 8 7 2.6063 0.8787 -2.6829 9 14 0.7829 2.5909 -3.8743 10 1 1.2566 2.0040 -5.1535 11 1 -0.6731 2.3409 -3.7236 12 1 1.0363 4.0541 -3.8776 13 7 1.6631 2.0951 1.2609 14 6 2.6727 1.8544 2.3005 15 6 2.1980 2.4610 3.6226 16 1 2.0629 3.5376 3.5189 17 6 3.2043 2.1488 4.7495 18 6 2.4362 1.9814 6.0721 19 6 1.2350 1.0439 5.7805 20 16 0.6373 1.6710 4.1633 21 1 -0.3634 0.5649 0.8585 22 1 -0.3634 0.4610 -0.9184 23 1 -0.3633 -1.0260 0.0600 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.1266 0.5143 -1.9498 27 1 0.7504 1.7921 1.5663 28 1 2.8177 0.7812 2.4245 29 1 3.6148 2.3169 2.0062 30 1 3.7388 1.2276 4.5178 31 1 3.9166 2.9687 4.8414 32 1 2.0767 2.9502 6.4191 33 1 3.0840 1.5332 6.8254 34 1 0.4660 1.1489 6.5458 35 1 1.5593 0.0065 5.6985 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087669011.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:09 Heat of formation + Delta-G solvation = -21.111168 kcal Electronic energy + Delta-G solvation = -14460.089078 eV Core-core repulsion = 12197.212721 eV Total energy + Delta-G solvation = -2262.876358 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.28676 -35.92244 -32.99425 -31.02978 -29.17737 -26.27207 -24.73640 -23.46488 -22.05130 -20.83321 -19.45075 -16.78470 -16.58667 -15.76291 -14.91283 -14.35336 -13.78978 -13.58292 -13.46488 -13.31327 -12.69159 -12.49778 -12.13058 -11.85884 -11.60312 -11.22841 -11.12702 -10.96549 -10.81072 -10.71250 -10.13502 -10.01992 -9.97821 -9.79237 -9.64746 -8.58326 -8.20799 -7.56839 -7.24064 -6.24151 -3.92039 1.90188 2.50690 3.50488 3.51679 3.70373 4.43392 4.55839 4.61736 4.80291 4.99665 5.12444 5.39716 5.44615 5.45364 5.50220 5.65882 5.71036 5.73588 5.95718 6.13405 6.23069 6.24324 6.29697 6.43279 6.82049 7.06336 7.12278 7.34203 7.39816 7.98956 8.34939 8.52330 8.72123 8.99341 9.75314 11.11572 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.048169 B = 0.006304 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.151061 B = 4440.326613 C = 4550.756624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.148 4.148 3 C 0.205 3.795 4 H 0.022 0.978 5 C -0.568 4.568 6 H 0.054 0.946 7 C 0.018 3.982 8 N -0.917 5.917 9 Si 1.064 2.936 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.677 5.677 14 C 0.074 3.926 15 C -0.035 4.035 16 H 0.105 0.895 17 C -0.127 4.127 18 C -0.125 4.125 19 C -0.081 4.081 20 S -0.287 6.287 21 H 0.038 0.962 22 H 0.067 0.933 23 H 0.025 0.975 24 H 0.067 0.933 25 H 0.020 0.980 26 H 0.267 0.733 27 H 0.334 0.666 28 H 0.026 0.974 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.029 0.400 15.736 15.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.188 4.188 3 C 0.096 3.904 4 H 0.039 0.961 5 C -0.607 4.607 6 H 0.073 0.927 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.893 3.107 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.216 1.216 13 N -0.310 5.310 14 C -0.058 4.058 15 C -0.164 4.164 16 H 0.123 0.877 17 C -0.167 4.167 18 C -0.164 4.164 19 C -0.229 4.229 20 S -0.061 6.061 21 H 0.057 0.943 22 H 0.086 0.914 23 H 0.044 0.956 24 H 0.085 0.915 25 H 0.038 0.962 26 H 0.079 0.921 27 H 0.155 0.845 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.975 0.894 13.366 13.431 hybrid contribution 1.145 -0.875 2.469 2.859 sum 0.170 0.019 15.835 15.836 Atomic orbital electron populations 1.21533 0.96650 0.98271 1.01967 1.22169 0.96339 1.01034 0.99285 1.19305 0.95284 0.88720 0.87068 0.96050 1.21841 1.31303 1.16509 0.91074 0.92729 1.25692 0.97026 0.96127 0.99682 1.70803 1.21314 1.27395 1.35905 0.83615 0.75671 0.75573 0.75847 1.21025 1.21524 1.21576 1.60880 1.04015 1.62857 1.03207 1.21978 0.96977 0.97231 0.89634 1.23956 0.92160 1.02901 0.97353 0.87662 1.22409 0.98327 1.03265 0.92651 1.22537 0.95980 0.99916 0.97931 1.24239 1.00228 1.01790 0.96644 1.87794 1.22202 1.72736 1.23338 0.94310 0.91422 0.95588 0.91476 0.96177 0.92141 0.84510 0.95566 0.90978 0.90689 0.89899 0.90436 0.90170 0.88378 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 9.38 37.16 0.35 -2.48 16 2 C -0.15 -3.54 5.46 -26.73 -0.15 -3.68 16 3 C 0.20 5.17 1.97 -68.86 -0.14 5.04 16 4 H 0.02 0.59 7.23 -51.93 -0.38 0.21 16 5 C -0.57 -15.98 7.33 -34.44 -0.25 -16.23 16 6 H 0.05 1.58 7.83 -52.48 -0.41 1.17 16 7 C 0.02 0.51 5.25 -17.82 -0.09 0.41 16 8 N -0.92 -27.38 12.90 55.43 0.72 -26.67 16 9 Si 1.06 25.51 29.91 -169.99 -5.08 20.43 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.68 -14.96 6.27 -107.94 -0.68 -15.63 16 14 C 0.07 1.33 4.94 -3.82 -0.02 1.31 16 15 C -0.03 -0.51 3.54 -26.06 -0.09 -0.61 16 16 H 0.11 1.60 8.14 -51.93 -0.42 1.17 16 17 C -0.13 -1.40 5.94 -25.62 -0.15 -1.55 16 18 C -0.12 -1.16 6.46 -25.15 -0.16 -1.32 16 19 C -0.08 -0.87 7.38 38.29 0.28 -0.58 16 20 S -0.29 -4.36 21.41 -107.50 -2.30 -6.66 16 21 H 0.04 0.82 6.34 -51.93 -0.33 0.50 16 22 H 0.07 1.64 7.20 -51.93 -0.37 1.27 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 1.74 6.26 -51.93 -0.32 1.42 16 25 H 0.02 0.44 7.45 -51.93 -0.39 0.05 16 26 H 0.27 7.96 6.02 -40.82 -0.25 7.71 16 27 H 0.33 7.33 5.17 -39.29 -0.20 7.13 16 28 H 0.03 0.49 7.39 -51.93 -0.38 0.10 16 29 H 0.07 1.30 8.13 -51.93 -0.42 0.88 16 30 H 0.07 0.83 7.83 -51.93 -0.41 0.42 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 283.28 15.07 4.27 4.27 Total: -1.00 -29.96 283.28 -9.12 -39.08 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.62 Total: 4.88 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -0.42 Total: -19.70 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.04 Total: -42.30 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -5.08 Total: 20.43 kcal Atomic # 16 Polarization: -4.36 SS G_CDS: -2.30 Total: -6.66 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.96 -9.12 -39.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087669011.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.967 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds