Wall clock time and date at job start Mon Mar 30 2020 03:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47222 * 2 1 4 4 H 1.09008 * 109.47175 * 57.31289 * 3 2 1 5 5 C 1.50693 * 109.47344 * 177.31217 * 3 2 1 6 6 H 1.08004 * 120.00380 * 114.67174 * 5 3 2 7 7 C 1.37881 * 120.00235 * 294.68005 * 5 3 2 8 8 N 1.31516 * 120.00093 * 180.27318 * 7 5 3 9 9 Si 1.86796 * 119.99851 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47253 * 90.00360 * 9 7 5 11 11 H 1.48497 * 109.47078 * 210.00291 * 9 7 5 12 12 H 1.48502 * 109.47334 * 330.00194 * 9 7 5 13 13 N 1.46896 * 109.47227 * 297.31548 * 3 2 1 14 14 C 1.46467 * 110.99918 * 297.41365 * 13 3 2 15 15 C 1.53255 * 109.85731 * 162.23383 * 14 13 3 16 16 S 1.81901 * 108.50399 * 62.00723 * 15 14 13 17 17 C 1.81897 * 101.91478 * 308.68941 * 16 15 14 18 18 H 1.08998 * 109.63679 * 291.40854 * 17 16 15 19 19 C 1.52998 * 109.63386 * 171.01112 * 17 16 15 20 20 C 1.46469 * 110.99996 * 171.43522 * 13 3 2 21 21 H 1.09000 * 109.47123 * 65.24794 * 1 2 3 22 22 H 1.09002 * 109.47340 * 185.24572 * 1 2 3 23 23 H 1.08998 * 109.47515 * 305.24905 * 1 2 3 24 24 H 1.09004 * 109.46979 * 239.99932 * 2 1 3 25 25 H 1.08998 * 109.46943 * 120.00141 * 2 1 3 26 26 H 0.97001 * 120.00226 * 179.72170 * 8 7 5 27 27 H 1.08998 * 109.40629 * 282.35509 * 14 13 3 28 28 H 1.08996 * 109.40574 * 42.19783 * 14 13 3 29 29 H 1.09004 * 109.62706 * 181.70934 * 15 14 13 30 30 H 1.08998 * 109.63100 * 302.09948 * 15 14 13 31 31 H 1.09001 * 109.47119 * 60.00066 * 19 17 16 32 32 H 1.08996 * 109.47478 * 180.02562 * 19 17 16 33 33 H 1.09003 * 109.47108 * 300.00827 * 19 17 16 34 34 H 1.09002 * 109.40757 * 317.88589 * 20 13 3 35 35 H 1.08998 * 109.41089 * 77.64978 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6379 1.9700 0.8650 5 6 3.5455 1.4430 0.0666 6 1 4.1227 1.8203 -0.7646 7 6 4.1861 0.9617 1.1887 8 7 5.4999 0.9672 1.2490 9 14 3.1879 0.3096 2.6266 10 1 2.9483 -1.1445 2.4439 11 1 3.9355 0.5331 3.8900 12 1 1.8862 1.0217 2.6890 13 7 1.6041 2.1160 -1.2305 14 6 2.1764 1.4696 -2.4137 15 6 1.3890 1.8794 -3.6629 16 16 1.5380 3.6799 -3.8745 17 6 1.0657 4.2919 -2.2280 18 1 0.0053 4.1056 -2.0583 19 6 1.3446 5.7935 -2.1382 20 6 1.8977 3.5499 -1.1763 21 1 -0.3633 0.4303 -0.9332 22 1 -0.3634 -1.0234 0.0940 23 1 -0.3634 0.5931 0.8392 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 5.9505 0.6323 2.0400 27 1 3.2170 1.7745 -2.5252 28 1 2.1269 0.3873 -2.2947 29 1 1.7989 1.3728 -4.5367 30 1 0.3405 1.6076 -3.5404 31 1 0.7650 6.3168 -2.8987 32 1 1.0611 6.1574 -1.1506 33 1 2.4068 5.9762 -2.3013 34 1 1.6532 3.9324 -0.1853 35 1 2.9575 3.7104 -1.3738 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123382327.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:57 Heat of formation + Delta-G solvation = -3.439730 kcal Electronic energy + Delta-G solvation = -15068.786611 eV Core-core repulsion = 12806.676544 eV Total energy + Delta-G solvation = -2262.110067 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.12958 -34.22005 -32.55860 -31.83056 -29.77936 -27.08300 -25.19458 -22.69525 -22.17577 -20.83636 -19.19283 -16.94695 -16.33244 -15.36774 -14.81579 -14.34988 -14.09033 -13.67631 -13.23769 -12.92050 -12.71199 -12.45630 -12.21193 -11.81427 -11.59819 -11.51176 -11.39735 -11.02057 -10.88104 -10.60899 -10.29140 -10.16595 -9.71722 -9.68926 -9.33203 -9.17917 -8.63572 -7.43435 -7.22325 -6.17152 -4.18917 2.16650 2.91220 3.20804 3.31770 3.32728 4.31858 4.59526 5.10808 5.22249 5.32288 5.50663 5.54742 5.70115 5.78606 5.85277 5.95321 5.96169 5.99193 6.14509 6.22249 6.27196 6.29888 6.58012 6.61801 6.66529 6.71466 6.85535 7.02756 7.14502 7.47406 7.96383 8.03249 8.38623 8.85113 9.45585 10.95532 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.031104 B = 0.009368 C = 0.008646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.990296 B = 2988.077021 C = 3237.628352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C 0.185 3.815 4 H 0.041 0.959 5 C -0.547 4.547 6 H 0.076 0.924 7 C 0.076 3.924 8 N -0.895 5.895 9 Si 0.880 3.120 10 H -0.277 1.277 11 H -0.295 1.295 12 H -0.263 1.263 13 N -0.539 5.539 14 C 0.060 3.940 15 C -0.069 4.069 16 S -0.296 6.296 17 C -0.040 4.040 18 H 0.088 0.912 19 C -0.131 4.131 20 C 0.070 3.930 21 H 0.058 0.942 22 H 0.033 0.967 23 H 0.042 0.958 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.264 0.736 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.444 3.161 -5.347 11.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.160 4.160 3 C 0.078 3.922 4 H 0.059 0.941 5 C -0.585 4.585 6 H 0.094 0.906 7 C -0.127 4.127 8 N -0.533 5.533 9 Si 0.710 3.290 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.188 1.188 13 N -0.262 5.262 14 C -0.069 4.069 15 C -0.218 4.218 16 S -0.070 6.070 17 C -0.169 4.169 18 H 0.106 0.894 19 C -0.190 4.190 20 C -0.060 4.060 21 H 0.077 0.923 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.482 3.647 -6.188 11.895 hybrid contribution 0.197 -1.114 1.939 2.245 sum -9.285 2.533 -4.249 10.521 Atomic orbital electron populations 1.21719 0.97389 0.99218 1.01601 1.21950 0.93955 0.99261 1.00816 1.19747 0.94399 0.90385 0.87662 0.94144 1.21627 0.90197 1.42786 1.03927 0.90588 1.24971 0.94666 0.94905 0.98168 1.69914 1.07699 1.46328 1.29334 0.86919 0.80580 0.79608 0.81922 1.20324 1.22196 1.18755 1.61523 1.59519 1.01672 1.03516 1.22077 0.96425 1.00083 0.88331 1.23549 1.04052 0.92489 1.01663 1.86566 1.91499 1.07975 1.20983 1.23250 1.02751 0.97737 0.93131 0.89364 1.21582 1.02673 0.92712 1.02020 1.22050 0.97855 0.88751 0.97326 0.92341 0.94797 0.93860 0.92219 0.93265 0.92601 0.93012 0.89735 0.88585 0.89919 0.92234 0.91279 0.91731 0.90670 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.71 37.16 0.36 -2.11 16 2 C -0.12 -2.52 4.84 -26.73 -0.13 -2.65 16 3 C 0.19 4.13 1.30 -68.87 -0.09 4.04 16 4 H 0.04 0.95 6.55 -51.92 -0.34 0.61 16 5 C -0.55 -14.49 7.94 -34.44 -0.27 -14.77 16 6 H 0.08 2.23 6.47 -52.48 -0.34 1.89 16 7 C 0.08 2.11 5.45 -17.82 -0.10 2.02 16 8 N -0.90 -26.68 13.96 55.43 0.77 -25.90 16 9 Si 0.88 21.18 24.67 -169.99 -4.19 16.99 16 10 H -0.28 -6.53 6.87 56.52 0.39 -6.14 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 12 H -0.26 -6.05 6.39 56.52 0.36 -5.69 16 13 N -0.54 -10.47 3.81 -228.44 -0.87 -11.34 16 14 C 0.06 1.12 4.55 -3.93 -0.02 1.10 16 15 C -0.07 -1.07 6.69 37.29 0.25 -0.82 16 16 S -0.30 -4.79 21.77 -107.50 -2.34 -7.13 16 17 C -0.04 -0.61 3.34 -26.60 -0.09 -0.70 16 18 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 19 C -0.13 -1.71 9.23 37.16 0.34 -1.37 16 20 C 0.07 1.30 4.24 -3.93 -0.02 1.28 16 21 H 0.06 0.97 7.84 -51.93 -0.41 0.57 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 1.21 6.03 -51.93 -0.31 0.90 16 25 H 0.05 1.09 3.98 -51.93 -0.21 0.88 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.05 1.10 6.72 -51.93 -0.35 0.75 16 28 H 0.08 1.58 5.65 -51.93 -0.29 1.28 16 29 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.39 7.78 -51.93 -0.40 0.98 16 35 H 0.05 1.09 7.48 -51.93 -0.39 0.71 16 LS Contribution 273.80 15.07 4.13 4.13 Total: -1.00 -28.11 273.80 -7.88 -35.98 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -5.61 Total: 1.24 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 0.24 Total: -13.97 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: -0.10 Total: -37.24 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.19 Total: 16.99 kcal Atomic # 16 Polarization: -4.79 SS G_CDS: -2.34 Total: -7.13 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.11 -7.88 -35.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123382327.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.543 kcal (2) G-P(sol) polarization free energy of solvation -28.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds