Wall clock time and date at job start Mon Mar 30 2020 03:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47222 * 2 1 4 4 H 1.09008 * 109.47175 * 57.31289 * 3 2 1 5 5 C 1.50693 * 109.47344 * 177.31217 * 3 2 1 6 6 H 1.08004 * 120.00380 * 114.67174 * 5 3 2 7 7 C 1.37881 * 120.00235 * 294.68005 * 5 3 2 8 8 N 1.31516 * 120.00093 * 180.27318 * 7 5 3 9 9 Si 1.86796 * 119.99851 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47253 * 90.00360 * 9 7 5 11 11 H 1.48497 * 109.47078 * 210.00291 * 9 7 5 12 12 H 1.48502 * 109.47334 * 330.00194 * 9 7 5 13 13 N 1.46896 * 109.47227 * 297.31548 * 3 2 1 14 14 C 1.46467 * 110.99918 * 297.41365 * 13 3 2 15 15 C 1.53255 * 109.85731 * 162.23383 * 14 13 3 16 16 S 1.81901 * 108.50399 * 62.00723 * 15 14 13 17 17 C 1.81897 * 101.91478 * 308.68941 * 16 15 14 18 18 H 1.08998 * 109.63679 * 291.40854 * 17 16 15 19 19 C 1.52998 * 109.63386 * 171.01112 * 17 16 15 20 20 C 1.46469 * 110.99996 * 171.43522 * 13 3 2 21 21 H 1.09000 * 109.47123 * 65.24794 * 1 2 3 22 22 H 1.09002 * 109.47340 * 185.24572 * 1 2 3 23 23 H 1.08998 * 109.47515 * 305.24905 * 1 2 3 24 24 H 1.09004 * 109.46979 * 239.99932 * 2 1 3 25 25 H 1.08998 * 109.46943 * 120.00141 * 2 1 3 26 26 H 0.97001 * 120.00226 * 179.72170 * 8 7 5 27 27 H 1.08998 * 109.40629 * 282.35509 * 14 13 3 28 28 H 1.08996 * 109.40574 * 42.19783 * 14 13 3 29 29 H 1.09004 * 109.62706 * 181.70934 * 15 14 13 30 30 H 1.08998 * 109.63100 * 302.09948 * 15 14 13 31 31 H 1.09001 * 109.47119 * 60.00066 * 19 17 16 32 32 H 1.08996 * 109.47478 * 180.02562 * 19 17 16 33 33 H 1.09003 * 109.47108 * 300.00827 * 19 17 16 34 34 H 1.09002 * 109.40757 * 317.88589 * 20 13 3 35 35 H 1.08998 * 109.41089 * 77.64978 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6379 1.9700 0.8650 5 6 3.5455 1.4430 0.0666 6 1 4.1227 1.8203 -0.7646 7 6 4.1861 0.9617 1.1887 8 7 5.4999 0.9672 1.2490 9 14 3.1879 0.3096 2.6266 10 1 2.9483 -1.1445 2.4439 11 1 3.9355 0.5331 3.8900 12 1 1.8862 1.0217 2.6890 13 7 1.6041 2.1160 -1.2305 14 6 2.1764 1.4696 -2.4137 15 6 1.3890 1.8794 -3.6629 16 16 1.5380 3.6799 -3.8745 17 6 1.0657 4.2919 -2.2280 18 1 0.0053 4.1056 -2.0583 19 6 1.3446 5.7935 -2.1382 20 6 1.8977 3.5499 -1.1763 21 1 -0.3633 0.4303 -0.9332 22 1 -0.3634 -1.0234 0.0940 23 1 -0.3634 0.5931 0.8392 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 5.9505 0.6323 2.0400 27 1 3.2170 1.7745 -2.5252 28 1 2.1269 0.3873 -2.2947 29 1 1.7989 1.3728 -4.5367 30 1 0.3405 1.6076 -3.5404 31 1 0.7650 6.3168 -2.8987 32 1 1.0611 6.1574 -1.1506 33 1 2.4068 5.9762 -2.3013 34 1 1.6532 3.9324 -0.1853 35 1 2.9575 3.7104 -1.3738 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123382327.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:57 Heat of formation + Delta-G solvation = -21.104237 kcal Electronic energy + Delta-G solvation = -15069.552601 eV Core-core repulsion = 12806.676544 eV Total energy + Delta-G solvation = -2262.876057 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.76039 -35.77171 -34.29961 -33.49853 -31.24612 -28.80668 -26.70153 -24.43661 -23.58500 -22.25837 -20.95584 -18.86641 -17.85362 -17.01222 -16.36090 -16.13107 -15.39166 -15.14135 -14.77417 -14.56123 -14.33658 -13.98193 -13.70553 -13.34581 -13.20332 -12.87870 -12.75291 -12.66156 -12.27692 -12.16202 -12.00785 -11.78318 -11.48770 -11.37561 -11.13170 -10.74362 -10.53092 -9.09221 -8.60174 -8.32991 -6.38266 0.89176 1.29658 1.34206 1.43985 1.62478 2.29262 3.02035 3.06239 3.88308 4.01759 4.18391 4.22067 4.27980 4.37968 4.42811 4.55351 4.60508 4.70305 4.77837 4.84801 4.88030 5.01993 5.05541 5.10639 5.19376 5.22970 5.28332 5.43264 5.48481 5.60473 6.09506 6.31082 6.40718 6.69688 7.30273 8.83481 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.031104 B = 0.009368 C = 0.008646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.990296 B = 2988.077021 C = 3237.628352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.122 4.122 3 C 0.189 3.811 4 H 0.036 0.964 5 C -0.539 4.539 6 H 0.032 0.968 7 C 0.017 3.983 8 N -0.947 5.947 9 Si 0.942 3.058 10 H -0.265 1.265 11 H -0.299 1.299 12 H -0.242 1.242 13 N -0.526 5.526 14 C 0.065 3.935 15 C -0.058 4.058 16 S -0.311 6.311 17 C -0.029 4.029 18 H 0.102 0.898 19 C -0.127 4.127 20 C 0.071 3.929 21 H 0.066 0.934 22 H 0.056 0.944 23 H 0.045 0.955 24 H 0.058 0.942 25 H 0.037 0.963 26 H 0.264 0.736 27 H 0.014 0.986 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.411 2.983 -5.396 13.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.160 4.160 3 C 0.080 3.920 4 H 0.053 0.947 5 C -0.578 4.578 6 H 0.050 0.950 7 C -0.181 4.181 8 N -0.587 5.587 9 Si 0.768 3.232 10 H -0.191 1.191 11 H -0.227 1.227 12 H -0.166 1.166 13 N -0.249 5.249 14 C -0.065 4.065 15 C -0.206 4.206 16 S -0.085 6.085 17 C -0.158 4.158 18 H 0.120 0.880 19 C -0.186 4.186 20 C -0.059 4.059 21 H 0.085 0.915 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.032 0.968 28 H 0.102 0.898 29 H 0.133 0.867 30 H 0.119 0.881 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -12.476 3.478 -6.263 14.386 hybrid contribution 1.201 -1.006 1.867 2.437 sum -11.275 2.472 -4.395 12.352 Atomic orbital electron populations 1.21625 0.94194 1.00930 1.02206 1.21863 0.96730 0.97182 1.00200 1.19647 0.91247 0.92151 0.88915 0.94661 1.21868 0.92599 1.41097 1.02218 0.94992 1.25819 0.95511 0.95512 1.01223 1.70073 1.09766 1.48512 1.30387 0.85920 0.79687 0.79672 0.77923 1.19100 1.22677 1.16552 1.61623 1.58550 1.02003 1.02734 1.22038 0.94974 0.99992 0.89511 1.23501 1.04531 0.92130 1.00478 1.86669 1.91803 1.08582 1.21426 1.23232 1.02543 0.98727 0.91298 0.87989 1.21593 1.02288 0.91040 1.03674 1.22073 0.96500 0.88656 0.98661 0.91459 0.92486 0.93605 0.92339 0.94505 0.92673 0.96787 0.89758 0.86689 0.88095 0.90451 0.89576 0.92905 0.90642 0.96551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 9.71 71.98 0.70 -3.40 16 2 C -0.12 -4.79 4.84 30.59 0.15 -4.64 16 3 C 0.19 8.29 1.30 44.17 0.06 8.35 16 4 H 0.04 1.61 6.55 -2.38 -0.02 1.60 16 5 C -0.54 -29.45 7.94 25.60 0.20 -29.25 16 6 H 0.03 1.99 6.47 -2.91 -0.02 1.97 16 7 C 0.02 0.99 5.45 84.66 0.46 1.45 16 8 N -0.95 -58.58 13.96 21.45 0.30 -58.28 16 9 Si 0.94 43.57 24.67 68.60 1.69 45.26 16 10 H -0.27 -11.72 6.87 99.48 0.68 -11.04 16 11 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 12 H -0.24 -10.28 6.39 99.48 0.64 -9.65 16 13 N -0.53 -20.04 3.81 -876.66 -3.34 -23.38 16 14 C 0.06 2.38 4.55 86.47 0.39 2.78 16 15 C -0.06 -1.69 6.69 72.07 0.48 -1.21 16 16 S -0.31 -9.57 21.77 -56.49 -1.23 -10.80 16 17 C -0.03 -0.85 3.34 30.68 0.10 -0.74 16 18 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 19 C -0.13 -3.07 9.23 71.98 0.66 -2.40 16 20 C 0.07 2.62 4.24 86.47 0.37 2.99 16 21 H 0.07 1.97 7.84 -2.39 -0.02 1.95 16 22 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.06 2.29 6.03 -2.39 -0.01 2.27 16 25 H 0.04 1.54 3.98 -2.39 -0.01 1.53 16 26 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 27 H 0.01 0.62 6.72 -2.39 -0.02 0.60 16 28 H 0.08 3.10 5.65 -2.39 -0.01 3.08 16 29 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 30 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 2.75 7.78 -2.39 -0.02 2.73 16 35 H 0.02 0.71 7.48 -2.39 -0.02 0.69 16 Total: -1.00 -62.25 273.80 1.96 -60.29 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.96 Total: 13.00 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 3.58 Total: -26.09 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -3.04 Total: -81.66 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.69 Total: 45.26 kcal Atomic # 16 Polarization: -9.57 SS G_CDS: -1.23 Total: -10.80 kcal Total: -62.25 1.96 -60.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123382327.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.186 kcal (2) G-P(sol) polarization free energy of solvation -62.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds