Wall clock time and date at job start Mon Mar 30 2020 02:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36664 * 120.11343 * 2 1 4 4 C 1.38791 * 120.52458 * 179.97438 * 3 2 1 5 5 C 1.37791 * 120.66920 * 359.97438 * 4 3 2 6 6 C 1.39090 * 119.77602 * 0.02562 * 5 4 3 7 7 C 1.39586 * 120.11784 * 179.97438 * 2 1 3 8 8 C 1.46485 * 134.03795 * 0.04779 * 7 2 1 9 9 C 1.34238 * 107.00295 * 179.73410 * 8 7 2 10 10 N 1.36831 * 109.93371 * 0.39734 * 9 8 7 11 11 C 1.46505 * 125.06217 * 179.85283 * 10 9 8 12 12 C 1.52997 * 109.47212 * 264.69588 * 11 10 9 13 13 C 1.50697 * 109.47466 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00362 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99850 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47052 * 89.99717 * 17 15 13 19 19 H 1.48495 * 109.47307 * 209.99656 * 17 15 13 20 20 H 1.48500 * 109.47143 * 330.00164 * 17 15 13 21 21 H 1.08996 * 109.47017 * 270.01906 * 1 2 3 22 22 H 1.08999 * 109.47275 * 30.02238 * 1 2 3 23 23 H 1.09003 * 109.46775 * 150.01914 * 1 2 3 24 24 H 1.07999 * 119.73992 * 359.97438 * 3 2 1 25 25 H 1.08001 * 119.66667 * 179.97438 * 4 3 2 26 26 H 1.07997 * 120.11276 * 180.02562 * 5 4 3 27 27 H 1.07999 * 126.50111 * 359.97438 * 8 7 2 28 28 H 1.07996 * 125.03440 * 180.24686 * 9 8 7 29 29 H 1.09002 * 109.47068 * 24.69648 * 11 10 9 30 30 H 1.09001 * 109.47372 * 144.69736 * 11 10 9 31 31 H 1.09002 * 109.47153 * 300.00008 * 12 11 10 32 32 H 1.08998 * 109.47533 * 59.99637 * 12 11 10 33 33 H 0.96994 * 119.99814 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.1822 0.0000 4 6 3.5806 1.1922 0.0005 5 6 4.2919 0.0120 0.0016 6 6 3.6145 -1.2028 0.0016 7 6 2.2074 -1.2074 0.0005 8 6 1.8075 -2.6166 0.0003 9 6 2.9353 -3.3447 -0.0048 10 7 4.0249 -2.5171 0.0010 11 6 5.4204 -2.9630 0.0010 12 6 5.9446 -2.9984 1.4379 13 6 7.3799 -3.4577 1.4380 14 1 7.8694 -3.6997 0.5063 15 6 8.0684 -3.5680 2.6274 16 7 9.3212 -3.9683 2.6274 17 14 7.2223 -3.1473 4.2389 18 1 6.5725 -4.3640 4.7891 19 1 8.2271 -2.6415 5.2083 20 1 6.1946 -2.1023 4.0004 21 1 -0.3633 0.0003 1.0276 22 1 -0.3634 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5136 24 1 1.6503 2.1161 -0.0004 25 1 4.1084 2.1344 0.0001 26 1 5.3717 0.0303 0.0024 27 1 0.7969 -2.9976 0.0000 28 1 2.9765 -4.4239 -0.0101 29 1 5.4830 -3.9608 -0.4333 30 1 6.0228 -2.2717 -0.5885 31 1 5.8820 -2.0006 1.8722 32 1 5.3423 -3.6896 2.0275 33 1 9.8054 -4.0462 3.4643 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128809090.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:24 Heat of formation + Delta-G solvation = 44.188264 kcal Electronic energy + Delta-G solvation = -15133.818672 eV Core-core repulsion = 12738.329959 eV Total energy + Delta-G solvation = -2395.488713 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.95427 -37.10239 -34.04097 -32.75013 -31.73290 -28.96397 -28.79658 -26.31592 -24.89052 -21.82044 -21.53116 -20.86277 -19.04857 -17.15189 -16.28400 -15.88548 -15.11567 -14.73489 -14.07229 -13.85287 -13.72125 -13.24149 -12.91124 -12.69270 -12.56724 -12.27666 -12.02738 -11.75493 -11.29127 -11.09673 -11.05059 -10.54561 -10.33089 -10.18913 -9.94140 -9.42781 -9.08902 -8.67757 -7.82317 -7.19393 -6.18742 -4.19900 1.43127 1.97640 3.08812 3.23179 3.31408 3.35865 3.37082 4.18999 4.34111 4.95300 5.13098 5.14807 5.19497 5.28250 5.51843 5.55345 5.65714 5.72361 5.88929 5.90230 5.99499 6.05310 6.15988 6.25115 6.30210 6.42625 6.79408 6.91983 6.98655 7.03677 7.12724 7.22880 7.52892 7.66638 7.80746 8.32841 8.82264 9.42354 10.93802 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.034364 B = 0.006635 C = 0.006348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.599512 B = 4218.787241 C = 4409.665810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.048 4.048 3 C -0.156 4.156 4 C -0.107 4.107 5 C -0.124 4.124 6 C 0.103 3.897 7 C -0.112 4.112 8 C -0.223 4.223 9 C 0.060 3.940 10 N -0.473 5.473 11 C 0.117 3.883 12 C -0.024 4.024 13 C -0.528 4.528 14 H 0.075 0.925 15 C 0.074 3.926 16 N -0.897 5.897 17 Si 0.878 3.122 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.265 1.265 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.115 0.885 25 H 0.120 0.880 26 H 0.121 0.879 27 H 0.140 0.860 28 H 0.164 0.836 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.023 0.977 32 H 0.017 0.983 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.093 6.393 -5.217 17.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.048 4.048 3 C -0.175 4.175 4 C -0.126 4.126 5 C -0.145 4.145 6 C -0.005 4.005 7 C -0.116 4.116 8 C -0.248 4.248 9 C -0.067 4.067 10 N -0.153 5.153 11 C -0.003 4.003 12 C -0.062 4.062 13 C -0.566 4.566 14 H 0.093 0.907 15 C -0.129 4.129 16 N -0.535 5.535 17 Si 0.705 3.295 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.190 1.190 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.133 0.867 25 H 0.138 0.862 26 H 0.139 0.861 27 H 0.157 0.843 28 H 0.181 0.819 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.041 0.959 32 H 0.036 0.964 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.577 6.201 -5.106 16.644 hybrid contribution -0.111 0.046 1.009 1.016 sum -14.689 6.247 -4.097 16.479 Atomic orbital electron populations 1.20688 0.91778 1.02129 1.01832 1.18969 0.95176 0.91322 0.99351 1.20392 0.94071 0.96841 1.06230 1.20693 0.93919 0.96807 1.01176 1.20141 0.99615 0.89694 1.05030 1.18286 0.93326 0.85353 1.03519 1.19032 0.91925 0.93217 1.07461 1.21477 0.97512 0.90797 1.15014 1.21852 0.85623 0.96436 1.02826 1.44559 1.07267 1.03647 1.59847 1.22044 0.76608 1.00434 1.01247 1.19919 0.97356 0.97634 0.91261 1.20887 0.94325 1.46128 0.95296 0.90671 1.24946 0.94638 0.94168 0.99107 1.69892 1.09505 1.46680 1.27385 0.86805 0.79697 0.79469 0.83574 1.20125 1.21068 1.18960 0.91608 0.92053 0.91775 0.86714 0.86217 0.86124 0.84271 0.81855 0.89750 0.90195 0.95910 0.96425 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.95 36.01 0.36 -0.84 16 2 C -0.05 -0.70 5.87 -104.69 -0.61 -1.32 16 3 C -0.16 -2.19 9.62 -39.95 -0.38 -2.57 16 4 C -0.11 -1.57 10.01 -39.54 -0.40 -1.97 16 5 C -0.12 -2.14 10.00 -39.43 -0.39 -2.53 16 6 C 0.10 1.89 6.81 -83.98 -0.57 1.32 16 7 C -0.11 -1.89 6.14 -105.14 -0.65 -2.54 16 8 C -0.22 -3.41 10.77 -37.67 -0.41 -3.82 16 9 C 0.06 0.95 11.27 -16.73 -0.19 0.77 16 10 N -0.47 -8.67 2.78 -114.42 -0.32 -8.99 16 11 C 0.12 2.27 5.94 -4.04 -0.02 2.24 16 12 C -0.02 -0.56 4.37 -27.89 -0.12 -0.68 16 13 C -0.53 -14.54 9.66 -34.44 -0.33 -14.88 16 14 H 0.08 2.18 7.99 -52.49 -0.42 1.77 16 15 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 16 N -0.90 -27.04 13.96 55.43 0.77 -26.26 16 17 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 21 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 22 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 23 H 0.06 0.68 7.90 -51.93 -0.41 0.27 16 24 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 25 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 26 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 27 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.16 2.10 8.06 -52.49 -0.42 1.68 16 29 H 0.08 1.52 8.12 -51.93 -0.42 1.10 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 32 H 0.02 0.42 7.57 -51.93 -0.39 0.02 16 33 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 282.59 15.07 4.26 4.26 Total: -1.00 -30.86 282.59 -8.34 -39.20 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -4.56 Total: -0.43 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -3.82 Total: -24.80 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.46 Total: -35.25 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.86 -8.34 -39.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128809090.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.387 kcal (2) G-P(sol) polarization free energy of solvation -30.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds