Wall clock time and date at job start Mon Mar 30 2020 02:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36664 * 120.11343 * 2 1 4 4 C 1.38791 * 120.52458 * 179.97438 * 3 2 1 5 5 C 1.37791 * 120.66920 * 359.97438 * 4 3 2 6 6 C 1.39090 * 119.77602 * 0.02562 * 5 4 3 7 7 C 1.39586 * 120.11784 * 179.97438 * 2 1 3 8 8 C 1.46485 * 134.03795 * 0.04779 * 7 2 1 9 9 C 1.34238 * 107.00295 * 179.73410 * 8 7 2 10 10 N 1.36831 * 109.93371 * 0.39734 * 9 8 7 11 11 C 1.46505 * 125.06217 * 179.85283 * 10 9 8 12 12 C 1.52997 * 109.47212 * 264.69588 * 11 10 9 13 13 C 1.50697 * 109.47466 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00362 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99850 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47052 * 89.99717 * 17 15 13 19 19 H 1.48495 * 109.47307 * 209.99656 * 17 15 13 20 20 H 1.48500 * 109.47143 * 330.00164 * 17 15 13 21 21 H 1.08996 * 109.47017 * 270.01906 * 1 2 3 22 22 H 1.08999 * 109.47275 * 30.02238 * 1 2 3 23 23 H 1.09003 * 109.46775 * 150.01914 * 1 2 3 24 24 H 1.07999 * 119.73992 * 359.97438 * 3 2 1 25 25 H 1.08001 * 119.66667 * 179.97438 * 4 3 2 26 26 H 1.07997 * 120.11276 * 180.02562 * 5 4 3 27 27 H 1.07999 * 126.50111 * 359.97438 * 8 7 2 28 28 H 1.07996 * 125.03440 * 180.24686 * 9 8 7 29 29 H 1.09002 * 109.47068 * 24.69648 * 11 10 9 30 30 H 1.09001 * 109.47372 * 144.69736 * 11 10 9 31 31 H 1.09002 * 109.47153 * 300.00008 * 12 11 10 32 32 H 1.08998 * 109.47533 * 59.99637 * 12 11 10 33 33 H 0.96994 * 119.99814 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.1822 0.0000 4 6 3.5806 1.1922 0.0005 5 6 4.2919 0.0120 0.0016 6 6 3.6145 -1.2028 0.0016 7 6 2.2074 -1.2074 0.0005 8 6 1.8075 -2.6166 0.0003 9 6 2.9353 -3.3447 -0.0048 10 7 4.0249 -2.5171 0.0010 11 6 5.4204 -2.9630 0.0010 12 6 5.9446 -2.9984 1.4379 13 6 7.3799 -3.4577 1.4380 14 1 7.8694 -3.6997 0.5063 15 6 8.0684 -3.5680 2.6274 16 7 9.3212 -3.9683 2.6274 17 14 7.2223 -3.1473 4.2389 18 1 6.5725 -4.3640 4.7891 19 1 8.2271 -2.6415 5.2083 20 1 6.1946 -2.1023 4.0004 21 1 -0.3633 0.0003 1.0276 22 1 -0.3634 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5136 24 1 1.6503 2.1161 -0.0004 25 1 4.1084 2.1344 0.0001 26 1 5.3717 0.0303 0.0024 27 1 0.7969 -2.9976 0.0000 28 1 2.9765 -4.4239 -0.0101 29 1 5.4830 -3.9608 -0.4333 30 1 6.0228 -2.2717 -0.5885 31 1 5.8820 -2.0006 1.8722 32 1 5.3423 -3.6896 2.0275 33 1 9.8054 -4.0462 3.4643 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128809090.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:24 Heat of formation + Delta-G solvation = 28.232565 kcal Electronic energy + Delta-G solvation = -15134.510563 eV Core-core repulsion = 12738.329959 eV Total energy + Delta-G solvation = -2396.180604 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.18405 -38.29962 -35.83900 -34.23993 -33.28820 -30.58033 -29.95869 -27.34268 -26.64015 -23.26257 -22.86950 -22.29323 -20.36538 -19.09716 -17.64841 -17.18414 -16.58691 -16.23390 -15.61279 -15.26789 -15.12017 -14.75404 -14.17055 -14.15410 -13.90262 -13.49945 -13.36685 -12.99108 -12.96803 -12.55010 -12.27442 -12.07646 -11.93159 -11.80191 -11.67658 -11.53908 -10.87174 -10.31418 -9.05263 -8.42158 -8.38887 -6.45099 0.25523 0.77694 1.27093 1.30212 1.41255 1.87927 2.04457 2.26319 2.95526 3.00506 3.79985 3.91340 4.03643 4.14917 4.28404 4.32391 4.48404 4.54050 4.60056 4.79848 4.82979 4.92555 4.95351 5.08168 5.10767 5.17916 5.21279 5.36279 5.46644 5.63690 5.78059 5.95618 6.04791 6.11535 6.42539 6.48559 6.62298 7.20616 8.76330 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.034364 B = 0.006635 C = 0.006348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.599512 B = 4218.787241 C = 4409.665810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.052 4.052 3 C -0.159 4.159 4 C -0.101 4.101 5 C -0.158 4.158 6 C 0.070 3.930 7 C -0.134 4.134 8 C -0.215 4.215 9 C 0.042 3.958 10 N -0.487 5.487 11 C 0.130 3.870 12 C -0.013 4.013 13 C -0.533 4.533 14 H 0.046 0.954 15 C 0.018 3.982 16 N -0.940 5.940 17 Si 0.942 3.058 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.263 1.263 21 H 0.075 0.925 22 H 0.082 0.918 23 H 0.069 0.931 24 H 0.148 0.852 25 H 0.144 0.856 26 H 0.108 0.892 27 H 0.170 0.830 28 H 0.189 0.811 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.010 0.990 32 H 0.019 0.981 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.965 7.326 -4.770 19.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.052 4.052 3 C -0.178 4.178 4 C -0.120 4.120 5 C -0.179 4.179 6 C -0.037 4.037 7 C -0.138 4.138 8 C -0.240 4.240 9 C -0.083 4.083 10 N -0.169 5.169 11 C 0.009 3.991 12 C -0.051 4.051 13 C -0.571 4.571 14 H 0.065 0.935 15 C -0.180 4.180 16 N -0.580 5.580 17 Si 0.766 3.234 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.187 1.187 21 H 0.094 0.906 22 H 0.101 0.899 23 H 0.088 0.912 24 H 0.166 0.834 25 H 0.162 0.838 26 H 0.126 0.874 27 H 0.187 0.813 28 H 0.206 0.794 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.028 0.972 32 H 0.037 0.963 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.481 7.135 -4.671 19.450 hybrid contribution 0.752 -0.172 0.788 1.103 sum -16.728 6.962 -3.883 18.531 Atomic orbital electron populations 1.20749 0.89021 1.03544 1.02834 1.19478 0.97274 0.90725 0.97750 1.20821 0.93807 0.98134 1.05074 1.21067 0.94740 0.96905 0.99325 1.20295 0.99401 0.90684 1.07529 1.18711 0.94622 0.85586 1.04733 1.19469 0.91487 0.94811 1.08079 1.21870 0.98640 0.90036 1.13425 1.22393 0.85137 0.97650 1.03152 1.44483 1.06847 1.04216 1.61354 1.21670 0.77903 1.01091 0.98427 1.19740 0.94994 0.96370 0.94038 1.21182 0.96302 1.45410 0.94242 0.93541 1.25801 0.95214 0.94184 1.02827 1.70017 1.11117 1.48330 1.28543 0.85780 0.78725 0.79584 0.79293 1.18859 1.20350 1.18696 0.90620 0.89933 0.91173 0.83433 0.83790 0.87358 0.81308 0.79374 0.88514 0.90773 0.97202 0.96297 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 9.95 71.24 0.71 -1.24 16 2 C -0.05 -1.39 5.87 -19.91 -0.12 -1.50 16 3 C -0.16 -4.02 9.62 22.03 0.21 -3.80 16 4 C -0.10 -2.85 10.01 22.30 0.22 -2.62 16 5 C -0.16 -5.50 10.00 22.37 0.22 -5.28 16 6 C 0.07 2.58 6.81 39.03 0.27 2.84 16 7 C -0.13 -4.31 6.14 -20.20 -0.12 -4.44 16 8 C -0.22 -6.11 10.77 23.51 0.25 -5.86 16 9 C 0.04 1.28 11.27 83.00 0.94 2.21 16 10 N -0.49 -17.77 2.78 -515.92 -1.43 -19.20 16 11 C 0.13 5.13 5.94 86.38 0.51 5.65 16 12 C -0.01 -0.63 4.37 29.85 0.13 -0.50 16 13 C -0.53 -30.09 9.66 25.60 0.25 -29.84 16 14 H 0.05 2.81 7.99 -2.91 -0.02 2.79 16 15 C 0.02 1.06 5.47 84.65 0.46 1.52 16 16 N -0.94 -57.87 13.96 21.45 0.30 -57.57 16 17 Si 0.94 44.90 27.47 68.60 1.88 46.79 16 18 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 20 H -0.26 -12.31 6.54 99.48 0.65 -11.66 16 21 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 22 H 0.08 1.19 8.08 -2.39 -0.02 1.17 16 23 H 0.07 1.22 7.90 -2.39 -0.02 1.20 16 24 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 25 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 26 H 0.11 3.85 8.06 -2.91 -0.02 3.83 16 27 H 0.17 3.62 8.06 -2.91 -0.02 3.59 16 28 H 0.19 4.48 8.06 -2.91 -0.02 4.45 16 29 H 0.10 3.51 8.12 -2.39 -0.02 3.49 16 30 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 31 H 0.01 0.48 7.20 -2.39 -0.02 0.47 16 32 H 0.02 0.88 7.57 -2.39 -0.02 0.87 16 33 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -67.09 282.59 5.71 -61.38 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 1.02 Total: 11.46 kcal Atomic # 6 Polarization: -46.79 SS G_CDS: 3.94 Total: -42.86 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -1.13 Total: -76.78 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.79 kcal Total: -67.09 5.71 -61.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128809090.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.615 kcal (2) G-P(sol) polarization free energy of solvation -67.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds