Wall clock time and date at job start Mon Mar 30 2020 02:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36468 * 120.10164 * 2 1 4 4 C 1.38901 * 120.59527 * 180.02562 * 3 2 1 5 5 C 1.38003 * 120.69774 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.05522 * 180.02562 * 5 4 3 7 7 C 1.38891 * 119.89195 * 0.02562 * 5 4 3 8 8 C 1.40451 * 120.09461 * 180.02562 * 2 1 3 9 9 C 1.40931 * 133.10060 * 359.97122 * 8 2 1 10 10 C 1.39129 * 107.49945 * 180.02562 * 9 8 2 11 11 C 1.39928 * 125.69105 * 179.73052 * 10 9 8 12 12 H 1.07992 * 119.99998 * 180.02562 * 11 10 9 13 13 C 1.40183 * 119.99822 * 0.02562 * 11 10 9 14 14 N 1.30756 * 120.00101 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99717 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47051 * 90.00765 * 15 13 11 17 17 H 1.48501 * 109.47189 * 210.00304 * 15 13 11 18 18 H 1.48500 * 109.47573 * 330.00537 * 15 13 11 19 19 N 1.38051 * 132.79988 * 180.02562 * 7 5 4 20 20 C 1.46494 * 125.60288 * 359.95431 * 19 7 5 21 21 H 1.08997 * 109.47037 * 269.99577 * 1 2 3 22 22 H 1.09001 * 109.46646 * 29.99495 * 1 2 3 23 23 H 1.08997 * 109.47387 * 149.99674 * 1 2 3 24 24 H 1.07997 * 119.70188 * 0.02562 * 3 2 1 25 25 H 1.07991 * 119.65147 * 180.02562 * 4 3 2 26 26 H 1.09001 * 109.47344 * 262.85124 * 6 5 4 27 27 H 1.09006 * 109.47424 * 22.84681 * 6 5 4 28 28 H 1.08997 * 109.47537 * 142.85034 * 6 5 4 29 29 H 1.07995 * 126.25159 * 0.03619 * 9 8 2 30 30 H 0.96999 * 119.99379 * 179.97438 * 14 13 11 31 31 H 1.09002 * 109.47338 * 277.14923 * 20 19 7 32 32 H 1.09002 * 109.46958 * 37.14296 * 20 19 7 33 33 H 1.09000 * 109.47144 * 157.13933 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1914 1.1806 0.0000 4 6 3.5804 1.1926 -0.0005 5 6 4.2951 0.0121 -0.0005 6 6 5.8018 0.0419 -0.0005 7 6 3.6235 -1.2037 -0.0006 8 6 2.2113 -1.2152 -0.0005 9 6 1.8038 -2.5643 -0.0006 10 6 2.9531 -3.3484 -0.0007 11 6 2.9870 -4.7473 0.0046 12 1 3.9350 -5.2645 0.0044 13 6 1.7903 -5.4773 0.0100 14 7 0.6424 -4.8511 0.0096 15 14 1.8355 -7.3448 0.0163 16 1 1.8507 -7.8348 1.4180 17 1 0.6337 -7.8714 -0.6791 18 1 3.0580 -7.8127 -0.6850 19 7 4.0566 -2.5145 -0.0001 20 6 5.4551 -2.9506 -0.0004 21 1 -0.3633 -0.0001 1.0276 22 1 -0.3633 0.8901 -0.5138 23 1 -0.3634 -0.8899 -0.5139 24 1 1.6483 2.1141 0.0004 25 1 4.1066 2.1357 -0.0001 26 1 6.1676 -0.0787 -1.0202 27 1 6.1463 0.9960 0.3985 28 1 6.1813 -0.7698 0.6200 29 1 0.7855 -2.9239 -0.0008 30 1 -0.1856 -5.3564 0.0130 31 1 5.8398 -2.9372 -1.0203 32 1 6.0461 -2.2764 0.6196 33 1 5.5203 -3.9626 0.3992 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214946059.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:30 Heat of formation + Delta-G solvation = 38.784772 kcal Electronic energy + Delta-G solvation = -15653.541522 eV Core-core repulsion = 13257.818496 eV Total energy + Delta-G solvation = -2395.723026 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.87361 -36.24037 -33.90365 -33.01914 -30.48291 -28.80486 -28.21942 -25.30340 -25.05659 -23.53348 -20.62593 -20.15766 -18.12502 -16.91845 -15.60137 -15.22935 -14.47544 -14.27639 -13.96613 -13.33426 -12.80258 -12.71278 -12.49439 -12.32786 -12.02998 -11.65978 -11.56569 -11.54106 -11.22246 -10.96131 -10.75610 -10.66541 -10.17214 -9.95837 -9.79273 -9.54567 -9.28515 -8.02241 -7.04089 -6.69838 -6.21774 -4.35266 2.31863 2.83009 3.00134 3.00372 3.04015 3.79388 4.08685 4.25558 4.98314 5.36921 5.52676 5.69978 5.79135 5.94862 6.00709 6.05778 6.10422 6.17425 6.24422 6.39824 6.48669 6.51452 6.67766 6.89246 6.96840 7.03790 7.08710 7.44902 7.65000 7.68796 7.80068 7.95270 8.05931 8.36906 8.70064 8.78133 8.99241 9.18544 10.13887 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.030035 B = 0.009186 C = 0.007080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.032448 B = 3047.296207 C = 3953.574919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.108 4.108 3 C -0.137 4.137 4 C -0.177 4.177 5 C -0.093 4.093 6 C -0.109 4.109 7 C 0.044 3.956 8 C -0.041 4.041 9 C -0.321 4.321 10 C 0.260 3.740 11 C -0.442 4.442 12 H 0.075 0.925 13 C 0.072 3.928 14 N -0.778 5.778 15 Si 0.926 3.074 16 H -0.269 1.269 17 H -0.275 1.275 18 H -0.263 1.263 19 N -0.515 5.515 20 C 0.090 3.910 21 H 0.052 0.948 22 H 0.046 0.954 23 H 0.062 0.938 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.166 0.834 30 H 0.280 0.720 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.800 2.483 0.118 4.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C -0.157 4.157 4 C -0.196 4.196 5 C -0.096 4.096 6 C -0.165 4.165 7 C -0.059 4.059 8 C -0.046 4.046 9 C -0.343 4.343 10 C 0.155 3.845 11 C -0.475 4.475 12 H 0.094 0.906 13 C -0.147 4.147 14 N -0.404 5.404 15 Si 0.750 3.250 16 H -0.194 1.194 17 H -0.200 1.200 18 H -0.187 1.187 19 N -0.205 5.205 20 C -0.052 4.052 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.081 0.919 24 H 0.115 0.885 25 H 0.117 0.883 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.182 0.818 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.846 2.320 0.113 4.493 hybrid contribution 0.166 -0.768 -0.018 0.786 sum 4.012 1.552 0.095 4.303 Atomic orbital electron populations 1.20503 0.92870 1.01086 1.00676 1.18932 0.94493 0.91729 1.05735 1.20063 0.93764 0.96071 1.05807 1.20077 0.93617 0.95119 1.10832 1.18575 0.93802 0.90887 1.06317 1.20845 0.93466 1.01340 1.00886 1.17995 0.93683 0.84106 1.10135 1.18343 0.91271 0.94221 1.00729 1.21749 0.99310 0.87915 1.25365 1.18183 0.83355 0.90184 0.92734 1.18669 0.93936 0.89104 1.45790 0.90640 1.25767 0.94526 1.01476 0.92961 1.69713 0.98702 1.37369 1.34578 0.86026 0.78914 0.80853 0.79215 1.19372 1.19953 1.18727 1.44081 1.04745 1.03973 1.67749 1.21739 0.81933 1.00745 1.00813 0.92907 0.93519 0.91898 0.88498 0.88305 0.92728 0.92684 0.92204 0.81756 0.90845 0.93515 0.91523 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.86 9.92 36.01 0.36 -1.50 16 2 C -0.11 -2.48 5.90 -104.43 -0.62 -3.09 16 3 C -0.14 -2.87 9.61 -39.97 -0.38 -3.25 16 4 C -0.18 -3.62 9.65 -39.42 -0.38 -4.00 16 5 C -0.09 -1.99 5.89 -104.47 -0.62 -2.60 16 6 C -0.11 -1.85 9.27 36.00 0.33 -1.51 16 7 C 0.04 1.07 6.74 -83.69 -0.56 0.51 16 8 C -0.04 -1.05 5.97 -106.91 -0.64 -1.69 16 9 C -0.32 -8.82 9.37 -38.23 -0.36 -9.18 16 10 C 0.26 6.97 6.65 -83.97 -0.56 6.41 16 11 C -0.44 -11.32 8.96 -38.22 -0.34 -11.67 16 12 H 0.08 1.80 6.89 -52.49 -0.36 1.44 16 13 C 0.07 1.75 5.50 -17.28 -0.10 1.65 16 14 N -0.78 -19.66 10.18 55.56 0.57 -19.09 16 15 Si 0.93 18.07 29.56 -169.99 -5.03 13.05 16 16 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 17 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 18 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 19 N -0.52 -12.43 3.24 -118.87 -0.39 -12.82 16 20 C 0.09 1.70 10.17 59.84 0.61 2.31 16 21 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 23 H 0.06 1.29 7.81 -51.93 -0.41 0.88 16 24 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 25 H 0.10 1.73 8.05 -52.49 -0.42 1.31 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.81 8.03 -51.93 -0.42 0.40 16 28 H 0.06 0.97 5.04 -51.93 -0.26 0.71 16 29 H 0.17 4.66 5.55 -52.49 -0.29 4.37 16 30 H 0.28 6.39 8.29 -40.82 -0.34 6.05 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.10 5.16 -51.93 -0.27 0.84 16 33 H 0.07 1.33 6.97 -51.93 -0.36 0.96 16 LS Contribution 270.26 15.07 4.07 4.07 Total: -1.00 -28.60 270.26 -8.06 -36.66 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.03 Total: 5.75 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: -3.25 Total: -27.62 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.18 Total: -31.91 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.05 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.60 -8.06 -36.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214946059.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.448 kcal (2) G-P(sol) polarization free energy of solvation -28.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds