Wall clock time and date at job start Mon Mar 30 2020 02:49:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.36468 * 120.10164 * 2 1
4 4 C 1.38901 * 120.59527 * 180.02562 * 3 2 1
5 5 C 1.38003 * 120.69774 * 359.97438 * 4 3 2
6 6 C 1.50694 * 120.05522 * 180.02562 * 5 4 3
7 7 C 1.38891 * 119.89195 * 0.02562 * 5 4 3
8 8 C 1.40451 * 120.09461 * 180.02562 * 2 1 3
9 9 C 1.40931 * 133.10060 * 359.97122 * 8 2 1
10 10 C 1.39129 * 107.49945 * 180.02562 * 9 8 2
11 11 C 1.39928 * 125.69105 * 179.73052 * 10 9 8
12 12 H 1.07992 * 119.99998 * 180.02562 * 11 10 9
13 13 C 1.40183 * 119.99822 * 0.02562 * 11 10 9
14 14 N 1.30756 * 120.00101 * 0.02562 * 13 11 10
15 15 Si 1.86798 * 119.99717 * 179.97438 * 13 11 10
16 16 H 1.48501 * 109.47051 * 90.00765 * 15 13 11
17 17 H 1.48501 * 109.47189 * 210.00304 * 15 13 11
18 18 H 1.48500 * 109.47573 * 330.00537 * 15 13 11
19 19 N 1.38051 * 132.79988 * 180.02562 * 7 5 4
20 20 C 1.46494 * 125.60288 * 359.95431 * 19 7 5
21 21 H 1.08997 * 109.47037 * 269.99577 * 1 2 3
22 22 H 1.09001 * 109.46646 * 29.99495 * 1 2 3
23 23 H 1.08997 * 109.47387 * 149.99674 * 1 2 3
24 24 H 1.07997 * 119.70188 * 0.02562 * 3 2 1
25 25 H 1.07991 * 119.65147 * 180.02562 * 4 3 2
26 26 H 1.09001 * 109.47344 * 262.85124 * 6 5 4
27 27 H 1.09006 * 109.47424 * 22.84681 * 6 5 4
28 28 H 1.08997 * 109.47537 * 142.85034 * 6 5 4
29 29 H 1.07995 * 126.25159 * 0.03619 * 9 8 2
30 30 H 0.96999 * 119.99379 * 179.97438 * 14 13 11
31 31 H 1.09002 * 109.47338 * 277.14923 * 20 19 7
32 32 H 1.09002 * 109.46958 * 37.14296 * 20 19 7
33 33 H 1.09000 * 109.47144 * 157.13933 * 20 19 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1914 1.1806 0.0000
4 6 3.5804 1.1926 -0.0005
5 6 4.2951 0.0121 -0.0005
6 6 5.8018 0.0419 -0.0005
7 6 3.6235 -1.2037 -0.0006
8 6 2.2113 -1.2152 -0.0005
9 6 1.8038 -2.5643 -0.0006
10 6 2.9531 -3.3484 -0.0007
11 6 2.9870 -4.7473 0.0046
12 1 3.9350 -5.2645 0.0044
13 6 1.7903 -5.4773 0.0100
14 7 0.6424 -4.8511 0.0096
15 14 1.8355 -7.3448 0.0163
16 1 1.8507 -7.8348 1.4180
17 1 0.6337 -7.8714 -0.6791
18 1 3.0580 -7.8127 -0.6850
19 7 4.0566 -2.5145 -0.0001
20 6 5.4551 -2.9506 -0.0004
21 1 -0.3633 -0.0001 1.0276
22 1 -0.3633 0.8901 -0.5138
23 1 -0.3634 -0.8899 -0.5139
24 1 1.6483 2.1141 0.0004
25 1 4.1066 2.1357 -0.0001
26 1 6.1676 -0.0787 -1.0202
27 1 6.1463 0.9960 0.3985
28 1 6.1813 -0.7698 0.6200
29 1 0.7855 -2.9239 -0.0008
30 1 -0.1856 -5.3564 0.0130
31 1 5.8398 -2.9372 -1.0203
32 1 6.0461 -2.2764 0.6196
33 1 5.5203 -3.9626 0.3992
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000214946059.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:49:30
Heat of formation + Delta-G solvation = 38.784772 kcal
Electronic energy + Delta-G solvation = -15653.541522 eV
Core-core repulsion = 13257.818496 eV
Total energy + Delta-G solvation = -2395.723026 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 229.116 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.87361 -36.24037 -33.90365 -33.01914 -30.48291 -28.80486 -28.21942 -25.30340
-25.05659 -23.53348 -20.62593 -20.15766 -18.12502 -16.91845 -15.60137 -15.22935
-14.47544 -14.27639 -13.96613 -13.33426 -12.80258 -12.71278 -12.49439 -12.32786
-12.02998 -11.65978 -11.56569 -11.54106 -11.22246 -10.96131 -10.75610 -10.66541
-10.17214 -9.95837 -9.79273 -9.54567 -9.28515 -8.02241 -7.04089 -6.69838
-6.21774 -4.35266 2.31863 2.83009 3.00134 3.00372 3.04015 3.79388
4.08685 4.25558 4.98314 5.36921 5.52676 5.69978 5.79135 5.94862
6.00709 6.05778 6.10422 6.17425 6.24422 6.39824 6.48669 6.51452
6.67766 6.89246 6.96840 7.03790 7.08710 7.44902 7.65000 7.68796
7.80068 7.95270 8.05931 8.36906 8.70064 8.78133 8.99241 9.18544
10.13887
Molecular weight = 229.12amu
Principal moments of inertia in cm(-1)
A = 0.030035 B = 0.009186 C = 0.007080
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 932.032448 B = 3047.296207 C = 3953.574919
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.095 4.095
2 C -0.108 4.108
3 C -0.137 4.137
4 C -0.177 4.177
5 C -0.093 4.093
6 C -0.109 4.109
7 C 0.044 3.956
8 C -0.041 4.041
9 C -0.321 4.321
10 C 0.260 3.740
11 C -0.442 4.442
12 H 0.075 0.925
13 C 0.072 3.928
14 N -0.778 5.778
15 Si 0.926 3.074
16 H -0.269 1.269
17 H -0.275 1.275
18 H -0.263 1.263
19 N -0.515 5.515
20 C 0.090 3.910
21 H 0.052 0.948
22 H 0.046 0.954
23 H 0.062 0.938
24 H 0.097 0.903
25 H 0.099 0.901
26 H 0.054 0.946
27 H 0.054 0.946
28 H 0.059 0.941
29 H 0.166 0.834
30 H 0.280 0.720
31 H 0.046 0.954
32 H 0.066 0.934
33 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.800 2.483 0.118 4.541
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.109 4.109
3 C -0.157 4.157
4 C -0.196 4.196
5 C -0.096 4.096
6 C -0.165 4.165
7 C -0.059 4.059
8 C -0.046 4.046
9 C -0.343 4.343
10 C 0.155 3.845
11 C -0.475 4.475
12 H 0.094 0.906
13 C -0.147 4.147
14 N -0.404 5.404
15 Si 0.750 3.250
16 H -0.194 1.194
17 H -0.200 1.200
18 H -0.187 1.187
19 N -0.205 5.205
20 C -0.052 4.052
21 H 0.071 0.929
22 H 0.065 0.935
23 H 0.081 0.919
24 H 0.115 0.885
25 H 0.117 0.883
26 H 0.073 0.927
27 H 0.073 0.927
28 H 0.078 0.922
29 H 0.182 0.818
30 H 0.092 0.908
31 H 0.065 0.935
32 H 0.085 0.915
33 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges 3.846 2.320 0.113 4.493
hybrid contribution 0.166 -0.768 -0.018 0.786
sum 4.012 1.552 0.095 4.303
Atomic orbital electron populations
1.20503 0.92870 1.01086 1.00676 1.18932 0.94493 0.91729 1.05735
1.20063 0.93764 0.96071 1.05807 1.20077 0.93617 0.95119 1.10832
1.18575 0.93802 0.90887 1.06317 1.20845 0.93466 1.01340 1.00886
1.17995 0.93683 0.84106 1.10135 1.18343 0.91271 0.94221 1.00729
1.21749 0.99310 0.87915 1.25365 1.18183 0.83355 0.90184 0.92734
1.18669 0.93936 0.89104 1.45790 0.90640 1.25767 0.94526 1.01476
0.92961 1.69713 0.98702 1.37369 1.34578 0.86026 0.78914 0.80853
0.79215 1.19372 1.19953 1.18727 1.44081 1.04745 1.03973 1.67749
1.21739 0.81933 1.00745 1.00813 0.92907 0.93519 0.91898 0.88498
0.88305 0.92728 0.92684 0.92204 0.81756 0.90845 0.93515 0.91523
0.90781
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.86 9.92 36.01 0.36 -1.50 16
2 C -0.11 -2.48 5.90 -104.43 -0.62 -3.09 16
3 C -0.14 -2.87 9.61 -39.97 -0.38 -3.25 16
4 C -0.18 -3.62 9.65 -39.42 -0.38 -4.00 16
5 C -0.09 -1.99 5.89 -104.47 -0.62 -2.60 16
6 C -0.11 -1.85 9.27 36.00 0.33 -1.51 16
7 C 0.04 1.07 6.74 -83.69 -0.56 0.51 16
8 C -0.04 -1.05 5.97 -106.91 -0.64 -1.69 16
9 C -0.32 -8.82 9.37 -38.23 -0.36 -9.18 16
10 C 0.26 6.97 6.65 -83.97 -0.56 6.41 16
11 C -0.44 -11.32 8.96 -38.22 -0.34 -11.67 16
12 H 0.08 1.80 6.89 -52.49 -0.36 1.44 16
13 C 0.07 1.75 5.50 -17.28 -0.10 1.65 16
14 N -0.78 -19.66 10.18 55.56 0.57 -19.09 16
15 Si 0.93 18.07 29.56 -169.99 -5.03 13.05 16
16 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16
17 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16
18 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16
19 N -0.52 -12.43 3.24 -118.87 -0.39 -12.82 16
20 C 0.09 1.70 10.17 59.84 0.61 2.31 16
21 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16
22 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16
23 H 0.06 1.29 7.81 -51.93 -0.41 0.88 16
24 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16
25 H 0.10 1.73 8.05 -52.49 -0.42 1.31 16
26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16
27 H 0.05 0.81 8.03 -51.93 -0.42 0.40 16
28 H 0.06 0.97 5.04 -51.93 -0.26 0.71 16
29 H 0.17 4.66 5.55 -52.49 -0.29 4.37 16
30 H 0.28 6.39 8.29 -40.82 -0.34 6.05 16
31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
32 H 0.07 1.10 5.16 -51.93 -0.27 0.84 16
33 H 0.07 1.33 6.97 -51.93 -0.36 0.96 16
LS Contribution 270.26 15.07 4.07 4.07
Total: -1.00 -28.60 270.26 -8.06 -36.66
By element:
Atomic # 1 Polarization: 9.78 SS G_CDS: -4.03 Total: 5.75 kcal
Atomic # 6 Polarization: -24.37 SS G_CDS: -3.25 Total: -27.62 kcal
Atomic # 7 Polarization: -32.09 SS G_CDS: 0.18 Total: -31.91 kcal
Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.05 kcal
Total LS contribution 4.07 Total: 4.07 kcal
Total: -28.60 -8.06 -36.66 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000214946059.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.448 kcal
(2) G-P(sol) polarization free energy of solvation -28.604 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.844 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.663 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.785 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds