Wall clock time and date at job start Mon Mar 30 2020 02:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36468 * 120.10164 * 2 1 4 4 C 1.38901 * 120.59527 * 180.02562 * 3 2 1 5 5 C 1.38003 * 120.69774 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.05522 * 180.02562 * 5 4 3 7 7 C 1.38891 * 119.89195 * 0.02562 * 5 4 3 8 8 C 1.40451 * 120.09461 * 180.02562 * 2 1 3 9 9 C 1.40931 * 133.10060 * 359.97122 * 8 2 1 10 10 C 1.39129 * 107.49945 * 180.02562 * 9 8 2 11 11 C 1.39928 * 125.69105 * 179.73052 * 10 9 8 12 12 H 1.07992 * 119.99998 * 180.02562 * 11 10 9 13 13 C 1.40183 * 119.99822 * 0.02562 * 11 10 9 14 14 N 1.30756 * 120.00101 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99717 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47051 * 90.00765 * 15 13 11 17 17 H 1.48501 * 109.47189 * 210.00304 * 15 13 11 18 18 H 1.48500 * 109.47573 * 330.00537 * 15 13 11 19 19 N 1.38051 * 132.79988 * 180.02562 * 7 5 4 20 20 C 1.46494 * 125.60288 * 359.95431 * 19 7 5 21 21 H 1.08997 * 109.47037 * 269.99577 * 1 2 3 22 22 H 1.09001 * 109.46646 * 29.99495 * 1 2 3 23 23 H 1.08997 * 109.47387 * 149.99674 * 1 2 3 24 24 H 1.07997 * 119.70188 * 0.02562 * 3 2 1 25 25 H 1.07991 * 119.65147 * 180.02562 * 4 3 2 26 26 H 1.09001 * 109.47344 * 262.85124 * 6 5 4 27 27 H 1.09006 * 109.47424 * 22.84681 * 6 5 4 28 28 H 1.08997 * 109.47537 * 142.85034 * 6 5 4 29 29 H 1.07995 * 126.25159 * 0.03619 * 9 8 2 30 30 H 0.96999 * 119.99379 * 179.97438 * 14 13 11 31 31 H 1.09002 * 109.47338 * 277.14923 * 20 19 7 32 32 H 1.09002 * 109.46958 * 37.14296 * 20 19 7 33 33 H 1.09000 * 109.47144 * 157.13933 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1914 1.1806 0.0000 4 6 3.5804 1.1926 -0.0005 5 6 4.2951 0.0121 -0.0005 6 6 5.8018 0.0419 -0.0005 7 6 3.6235 -1.2037 -0.0006 8 6 2.2113 -1.2152 -0.0005 9 6 1.8038 -2.5643 -0.0006 10 6 2.9531 -3.3484 -0.0007 11 6 2.9870 -4.7473 0.0046 12 1 3.9350 -5.2645 0.0044 13 6 1.7903 -5.4773 0.0100 14 7 0.6424 -4.8511 0.0096 15 14 1.8355 -7.3448 0.0163 16 1 1.8507 -7.8348 1.4180 17 1 0.6337 -7.8714 -0.6791 18 1 3.0580 -7.8127 -0.6850 19 7 4.0566 -2.5145 -0.0001 20 6 5.4551 -2.9506 -0.0004 21 1 -0.3633 -0.0001 1.0276 22 1 -0.3633 0.8901 -0.5138 23 1 -0.3634 -0.8899 -0.5139 24 1 1.6483 2.1141 0.0004 25 1 4.1066 2.1357 -0.0001 26 1 6.1676 -0.0787 -1.0202 27 1 6.1463 0.9960 0.3985 28 1 6.1813 -0.7698 0.6200 29 1 0.7855 -2.9239 -0.0008 30 1 -0.1856 -5.3564 0.0130 31 1 5.8398 -2.9372 -1.0203 32 1 6.0461 -2.2764 0.6196 33 1 5.5203 -3.9626 0.3992 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214946059.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:30 Heat of formation + Delta-G solvation = 24.245843 kcal Electronic energy + Delta-G solvation = -15654.171977 eV Core-core repulsion = 13257.818496 eV Total energy + Delta-G solvation = -2396.353481 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.62917 -37.94756 -35.67503 -34.68626 -32.15333 -30.52802 -29.85917 -26.94266 -26.85338 -25.10587 -22.41677 -21.88729 -19.89396 -18.75273 -17.36452 -16.93608 -16.06687 -15.91383 -15.58904 -14.93806 -14.35004 -14.29315 -14.06118 -13.87156 -13.69214 -13.34404 -13.17384 -13.12031 -12.79518 -12.68950 -12.35833 -12.19538 -11.77217 -11.61886 -11.57186 -11.25449 -11.01327 -9.79088 -8.87029 -8.50634 -7.98813 -6.28586 0.60101 1.12726 1.39053 1.43389 1.54303 2.15694 2.26817 2.56781 3.22611 3.47876 4.09053 4.16140 4.29925 4.43807 4.50529 4.59231 4.59840 4.71017 4.86923 4.89646 4.92773 4.99823 5.08622 5.13017 5.27569 5.39280 5.40731 5.68603 5.87350 5.92855 6.04946 6.14475 6.26833 6.56347 6.80640 6.89557 7.15052 7.31363 8.36086 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.030035 B = 0.009186 C = 0.007080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.032448 B = 3047.296207 C = 3953.574919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.128 4.128 3 C -0.140 4.140 4 C -0.169 4.169 5 C -0.103 4.103 6 C -0.104 4.104 7 C 0.020 3.980 8 C -0.082 4.082 9 C -0.361 4.361 10 C 0.232 3.768 11 C -0.472 4.472 12 H 0.086 0.914 13 C 0.026 3.974 14 N -0.814 5.814 15 Si 1.003 2.997 16 H -0.262 1.262 17 H -0.268 1.268 18 H -0.255 1.255 19 N -0.521 5.521 20 C 0.085 3.915 21 H 0.059 0.941 22 H 0.078 0.922 23 H 0.040 0.960 24 H 0.131 0.869 25 H 0.138 0.862 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.143 0.857 30 H 0.286 0.714 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.437 3.621 0.148 6.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C -0.159 4.159 4 C -0.188 4.188 5 C -0.106 4.106 6 C -0.161 4.161 7 C -0.083 4.083 8 C -0.087 4.087 9 C -0.384 4.384 10 C 0.126 3.874 11 C -0.504 4.504 12 H 0.104 0.896 13 C -0.189 4.189 14 N -0.440 5.440 15 Si 0.823 3.177 16 H -0.187 1.187 17 H -0.193 1.193 18 H -0.178 1.178 19 N -0.211 5.211 20 C -0.056 4.056 21 H 0.078 0.922 22 H 0.097 0.903 23 H 0.059 0.941 24 H 0.149 0.851 25 H 0.156 0.844 26 H 0.084 0.916 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.161 0.839 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.510 3.484 0.142 6.520 hybrid contribution -0.333 -0.898 -0.028 0.958 sum 5.177 2.587 0.114 5.788 Atomic orbital electron populations 1.20483 0.91360 1.01527 1.01228 1.19389 0.96078 0.91716 1.05741 1.20503 0.94514 0.96519 1.04362 1.20655 0.93730 0.96389 1.08010 1.19145 0.96501 0.89869 1.05116 1.20871 0.90092 1.03155 1.01950 1.18477 0.93655 0.85357 1.10771 1.18724 0.92923 0.94530 1.02526 1.21696 0.98984 0.89598 1.28141 1.18497 0.84366 0.91045 0.93475 1.19031 0.95036 0.89158 1.47214 0.89638 1.26836 0.93694 1.06575 0.91833 1.69840 0.99531 1.39427 1.35164 0.84885 0.79248 0.74130 0.79455 1.18669 1.19266 1.17824 1.44291 1.05912 1.03643 1.67297 1.22007 0.79739 1.01565 1.02282 0.92250 0.90334 0.94087 0.85067 0.84397 0.91571 0.89864 0.91757 0.83935 0.90301 0.92121 0.89020 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.54 9.92 71.24 0.71 -2.83 16 2 C -0.13 -5.90 5.90 -19.74 -0.12 -6.02 16 3 C -0.14 -5.48 9.61 22.02 0.21 -5.27 16 4 C -0.17 -6.31 9.65 22.37 0.22 -6.09 16 5 C -0.10 -4.19 5.89 -19.77 -0.12 -4.31 16 6 C -0.10 -3.15 9.27 71.23 0.66 -2.49 16 7 C 0.02 1.00 6.74 39.06 0.26 1.27 16 8 C -0.08 -4.39 5.97 -21.35 -0.13 -4.52 16 9 C -0.36 -21.14 9.37 23.14 0.22 -20.92 16 10 C 0.23 13.01 6.65 38.74 0.26 13.27 16 11 C -0.47 -25.06 8.96 23.15 0.21 -24.85 16 12 H 0.09 4.16 6.89 -2.91 -0.02 4.14 16 13 C 0.03 1.31 5.50 85.33 0.47 1.78 16 14 N -0.81 -43.32 10.18 21.87 0.22 -43.09 16 15 Si 1.00 37.51 29.56 68.60 2.03 39.53 16 16 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 17 H -0.27 -9.62 7.11 99.48 0.71 -8.92 16 18 H -0.25 -9.07 7.11 99.48 0.71 -8.37 16 19 N -0.52 -25.58 3.24 -529.99 -1.72 -27.30 16 20 C 0.08 3.13 10.17 127.77 1.30 4.43 16 21 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 22 H 0.08 2.54 8.08 -2.39 -0.02 2.52 16 23 H 0.04 1.76 7.81 -2.39 -0.02 1.74 16 24 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 25 H 0.14 4.06 8.05 -2.92 -0.02 4.04 16 26 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.08 2.04 8.03 -2.38 -0.02 2.02 16 28 H 0.06 1.87 5.04 -2.39 -0.01 1.86 16 29 H 0.14 8.78 5.55 -2.91 -0.02 8.76 16 30 H 0.29 13.69 8.29 -92.71 -0.77 12.93 16 31 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.09 2.85 5.16 -2.39 -0.01 2.84 16 33 H 0.08 2.75 6.97 -2.39 -0.02 2.73 16 Total: -1.00 -65.42 270.26 5.79 -59.63 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: 1.11 Total: 27.79 kcal Atomic # 6 Polarization: -60.70 SS G_CDS: 4.15 Total: -56.56 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -1.50 Total: -70.39 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.53 kcal Total: -65.42 5.79 -59.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214946059.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.875 kcal (2) G-P(sol) polarization free energy of solvation -65.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds