Wall clock time and date at job start Mon Mar 30 2020 03:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 H 1.08005 * 119.99768 * 239.99676 * 5 3 2 7 7 C 1.37873 * 120.00204 * 59.99898 * 5 3 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46854 * 90.00146 * 9 7 5 11 11 H 1.48502 * 109.47180 * 209.99800 * 9 7 5 12 12 H 1.48497 * 109.47188 * 330.00489 * 9 7 5 13 13 N 1.46905 * 109.47150 * 64.99960 * 3 2 1 14 14 C 1.46473 * 110.99874 * 66.04965 * 13 3 2 15 15 C 1.53245 * 109.85812 * 197.76770 * 14 13 3 16 16 S 1.81897 * 108.50388 * 297.99181 * 15 14 13 17 17 C 1.81898 * 101.91386 * 51.31163 * 16 15 14 18 18 H 1.08996 * 109.63201 * 68.39726 * 17 16 15 19 19 C 1.53001 * 109.63114 * 188.79057 * 17 16 15 20 20 C 1.46465 * 110.99909 * 192.02800 * 13 3 2 21 21 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 22 22 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 25 25 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 26 26 H 0.96993 * 120.00193 * 179.97438 * 8 7 5 27 27 H 1.09005 * 109.40299 * 317.88698 * 14 13 3 28 28 H 1.08998 * 109.40423 * 77.64567 * 14 13 3 29 29 H 1.08998 * 109.63345 * 57.69702 * 15 14 13 30 30 H 1.09006 * 109.62979 * 178.08905 * 15 14 13 31 31 H 1.09000 * 109.46956 * 59.99447 * 19 17 16 32 32 H 1.08995 * 109.47147 * 179.97438 * 19 17 16 33 33 H 1.08999 * 109.47260 * 299.99637 * 19 17 16 34 34 H 1.09002 * 109.40495 * 282.35191 * 20 13 3 35 35 H 1.08997 * 109.41318 * 42.11827 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8815 -1.3819 10 1 6.5549 -0.3500 -0.7603 11 1 6.3828 0.9226 -2.8175 12 1 6.5568 2.0740 -0.6903 13 7 1.6513 2.0993 1.2553 14 6 2.3321 1.4890 2.3996 15 6 1.6080 1.8645 3.6969 16 16 1.6781 3.6713 3.8951 17 6 1.0685 4.2499 2.2819 18 1 0.0110 4.0058 2.1810 19 6 1.2591 5.7641 2.1734 20 6 1.8669 3.5460 1.1793 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.8292 -0.0602 -2.9503 27 1 2.3318 0.4050 2.2853 28 1 3.3607 1.8472 2.4422 29 1 0.5682 1.5421 3.6424 30 1 2.0974 1.3811 4.5426 31 1 2.3180 6.0047 2.2677 32 1 0.8934 6.1079 1.2059 33 1 0.7019 6.2584 2.9692 34 1 2.9278 3.7612 1.3067 35 1 1.5390 3.9105 0.2058 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220954815.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:02 Heat of formation + Delta-G solvation = -9.364242 kcal Electronic energy + Delta-G solvation = -15011.523325 eV Core-core repulsion = 12749.156352 eV Total energy + Delta-G solvation = -2262.366973 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.91201 -34.10219 -32.58406 -31.35154 -29.59411 -26.72851 -24.99217 -22.94983 -21.98043 -20.67599 -19.02009 -16.75004 -15.91965 -15.24021 -14.80939 -14.17068 -14.03144 -13.55327 -13.28869 -12.77110 -12.57924 -12.14086 -12.07267 -11.54107 -11.51035 -11.18924 -11.07124 -10.92398 -10.83894 -10.62387 -10.21421 -10.08081 -9.68971 -9.60902 -9.16738 -9.09459 -8.41776 -7.38888 -7.18360 -6.04734 -4.18264 2.20541 2.94831 3.23586 3.31277 3.34525 4.35476 4.73652 5.18492 5.25724 5.36934 5.56692 5.58872 5.77292 5.86545 5.91897 6.00889 6.20033 6.27285 6.34034 6.39349 6.44715 6.61313 6.63235 6.69358 7.05279 7.11038 7.27788 7.52333 7.70344 7.87558 8.07131 8.22955 8.39328 8.90931 9.50113 10.94858 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.026742 B = 0.009360 C = 0.008325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.783399 B = 2990.793028 C = 3362.600983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C 0.219 3.781 4 H 0.039 0.961 5 C -0.545 4.545 6 H 0.056 0.944 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.547 5.547 14 C 0.064 3.936 15 C -0.069 4.069 16 S -0.301 6.301 17 C -0.039 4.039 18 H 0.088 0.912 19 C -0.130 4.130 20 C 0.071 3.929 21 H 0.046 0.954 22 H 0.039 0.961 23 H 0.026 0.974 24 H 0.033 0.967 25 H 0.094 0.906 26 H 0.262 0.738 27 H 0.085 0.915 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.045 0.955 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.200 4.216 6.966 9.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C 0.113 3.887 4 H 0.057 0.943 5 C -0.584 4.584 6 H 0.074 0.926 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.271 5.271 14 C -0.065 4.065 15 C -0.217 4.217 16 S -0.075 6.075 17 C -0.168 4.168 18 H 0.107 0.893 19 C -0.189 4.189 20 C -0.059 4.059 21 H 0.065 0.935 22 H 0.058 0.942 23 H 0.045 0.955 24 H 0.052 0.948 25 H 0.112 0.888 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.352 4.643 7.739 10.019 hybrid contribution 1.539 -0.683 -1.256 2.101 sum -2.813 3.960 6.482 8.100 Atomic orbital electron populations 1.21704 0.98824 0.98487 1.00505 1.21635 0.92280 0.99111 1.01977 1.19283 0.93236 0.91163 0.84972 0.94318 1.21749 0.92669 1.38344 1.05666 0.92563 1.24906 0.97902 0.94932 0.95608 1.69868 1.34852 1.38179 1.09400 0.86670 0.86095 0.78464 0.77255 1.20655 1.21175 1.20002 1.61612 1.58193 1.01871 1.05399 1.22013 0.95475 1.00644 0.88400 1.23567 1.04404 0.92167 1.01606 1.86501 1.88197 1.08379 1.24428 1.23257 1.02480 0.97764 0.93340 0.89347 1.21577 1.02643 0.92735 1.01977 1.22028 0.97813 0.89414 0.96658 0.93515 0.94216 0.95528 0.94841 0.88815 0.92831 0.89708 0.93673 0.89912 0.88748 0.91899 0.91276 0.92270 0.93723 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.80 37.16 0.36 -2.36 16 2 C -0.11 -2.55 5.19 -26.73 -0.14 -2.69 16 3 C 0.22 5.19 1.68 -68.86 -0.12 5.07 16 4 H 0.04 1.02 7.79 -51.93 -0.40 0.62 16 5 C -0.55 -14.15 7.45 -34.44 -0.26 -14.41 16 6 H 0.06 1.49 6.23 -52.48 -0.33 1.16 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.28 11.29 55.43 0.63 -23.65 16 9 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.55 -11.08 3.78 -228.44 -0.86 -11.94 16 14 C 0.06 1.23 4.47 -3.93 -0.02 1.21 16 15 C -0.07 -1.11 6.69 37.28 0.25 -0.86 16 16 S -0.30 -4.95 21.77 -107.50 -2.34 -7.29 16 17 C -0.04 -0.62 3.33 -26.60 -0.09 -0.71 16 18 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 19 C -0.13 -1.72 9.24 37.16 0.34 -1.38 16 20 C 0.07 1.34 4.32 -3.93 -0.02 1.32 16 21 H 0.05 0.89 7.75 -51.93 -0.40 0.48 16 22 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.03 0.75 6.09 -51.93 -0.32 0.43 16 25 H 0.09 2.41 5.95 -51.93 -0.31 2.10 16 26 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 27 H 0.08 1.67 5.82 -51.93 -0.30 1.37 16 28 H 0.05 0.95 6.66 -51.93 -0.35 0.60 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.04 0.92 7.58 -51.93 -0.39 0.53 16 35 H 0.07 1.43 7.73 -51.93 -0.40 1.03 16 LS Contribution 280.21 15.07 4.22 4.22 Total: -1.00 -26.36 280.21 -8.87 -35.23 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.72 Total: 0.68 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 0.23 Total: -13.06 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: -0.24 Total: -35.59 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -4.95 SS G_CDS: -2.34 Total: -7.29 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -26.36 -8.87 -35.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220954815.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.864 kcal (2) G-P(sol) polarization free energy of solvation -26.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds