Wall clock time and date at job start Mon Mar 30 2020 03:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 H 1.08005 * 119.99768 * 239.99676 * 5 3 2 7 7 C 1.37873 * 120.00204 * 59.99898 * 5 3 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46854 * 90.00146 * 9 7 5 11 11 H 1.48502 * 109.47180 * 209.99800 * 9 7 5 12 12 H 1.48497 * 109.47188 * 330.00489 * 9 7 5 13 13 N 1.46905 * 109.47150 * 64.99960 * 3 2 1 14 14 C 1.46473 * 110.99874 * 66.04965 * 13 3 2 15 15 C 1.53245 * 109.85812 * 197.76770 * 14 13 3 16 16 S 1.81897 * 108.50388 * 297.99181 * 15 14 13 17 17 C 1.81898 * 101.91386 * 51.31163 * 16 15 14 18 18 H 1.08996 * 109.63201 * 68.39726 * 17 16 15 19 19 C 1.53001 * 109.63114 * 188.79057 * 17 16 15 20 20 C 1.46465 * 110.99909 * 192.02800 * 13 3 2 21 21 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 22 22 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 25 25 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 26 26 H 0.96993 * 120.00193 * 179.97438 * 8 7 5 27 27 H 1.09005 * 109.40299 * 317.88698 * 14 13 3 28 28 H 1.08998 * 109.40423 * 77.64567 * 14 13 3 29 29 H 1.08998 * 109.63345 * 57.69702 * 15 14 13 30 30 H 1.09006 * 109.62979 * 178.08905 * 15 14 13 31 31 H 1.09000 * 109.46956 * 59.99447 * 19 17 16 32 32 H 1.08995 * 109.47147 * 179.97438 * 19 17 16 33 33 H 1.08999 * 109.47260 * 299.99637 * 19 17 16 34 34 H 1.09002 * 109.40495 * 282.35191 * 20 13 3 35 35 H 1.08997 * 109.41318 * 42.11827 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8815 -1.3819 10 1 6.5549 -0.3500 -0.7603 11 1 6.3828 0.9226 -2.8175 12 1 6.5568 2.0740 -0.6903 13 7 1.6513 2.0993 1.2553 14 6 2.3321 1.4890 2.3996 15 6 1.6080 1.8645 3.6969 16 16 1.6781 3.6713 3.8951 17 6 1.0685 4.2499 2.2819 18 1 0.0110 4.0058 2.1810 19 6 1.2591 5.7641 2.1734 20 6 1.8669 3.5460 1.1793 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.8292 -0.0602 -2.9503 27 1 2.3318 0.4050 2.2853 28 1 3.3607 1.8472 2.4422 29 1 0.5682 1.5421 3.6424 30 1 2.0974 1.3811 4.5426 31 1 2.3180 6.0047 2.2677 32 1 0.8934 6.1079 1.2059 33 1 0.7019 6.2584 2.9692 34 1 2.9278 3.7612 1.3067 35 1 1.5390 3.9105 0.2058 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220954815.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:02 Heat of formation + Delta-G solvation = -23.512752 kcal Electronic energy + Delta-G solvation = -15012.136850 eV Core-core repulsion = 12749.156352 eV Total energy + Delta-G solvation = -2262.980498 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.58661 -35.74956 -34.18874 -33.12295 -31.11933 -28.47039 -26.58275 -24.71664 -23.44116 -22.16830 -20.83486 -18.52575 -17.55368 -16.99568 -16.38132 -15.91986 -15.34448 -15.04209 -14.87923 -14.40629 -14.15764 -13.71909 -13.50057 -13.19252 -13.01392 -12.80703 -12.69637 -12.65289 -12.40902 -12.17078 -11.95487 -11.77206 -11.54224 -11.26238 -11.02676 -10.53657 -10.42877 -9.06900 -8.59792 -8.06253 -6.28214 0.90712 1.35125 1.38157 1.46044 1.63027 2.38265 3.12238 3.19550 3.90924 4.05989 4.22061 4.26786 4.37038 4.44004 4.60686 4.68463 4.74370 4.82155 4.88397 4.90230 4.93927 5.05817 5.13370 5.23423 5.25342 5.41798 5.48265 5.60131 5.77033 6.01936 6.14047 6.33915 6.59999 6.90762 7.43027 8.89197 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.026742 B = 0.009360 C = 0.008325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.783399 B = 2990.793028 C = 3362.600983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.107 4.107 3 C 0.226 3.774 4 H 0.007 0.993 5 C -0.552 4.552 6 H 0.046 0.954 7 C 0.025 3.975 8 N -0.908 5.908 9 Si 0.943 3.057 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.276 1.276 13 N -0.541 5.541 14 C 0.069 3.931 15 C -0.061 4.061 16 S -0.303 6.303 17 C -0.032 4.032 18 H 0.094 0.906 19 C -0.126 4.126 20 C 0.074 3.926 21 H 0.056 0.944 22 H 0.032 0.968 23 H 0.046 0.954 24 H 0.035 0.965 25 H 0.063 0.937 26 H 0.262 0.738 27 H 0.077 0.923 28 H 0.022 0.978 29 H 0.092 0.908 30 H 0.117 0.883 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.022 0.978 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.692 4.610 8.175 10.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.145 4.145 3 C 0.119 3.881 4 H 0.025 0.975 5 C -0.591 4.591 6 H 0.064 0.936 7 C -0.175 4.175 8 N -0.547 5.547 9 Si 0.769 3.231 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.201 1.201 13 N -0.264 5.264 14 C -0.061 4.061 15 C -0.209 4.209 16 S -0.078 6.078 17 C -0.161 4.161 18 H 0.112 0.888 19 C -0.184 4.184 20 C -0.057 4.057 21 H 0.075 0.925 22 H 0.051 0.949 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.041 0.959 29 H 0.111 0.889 30 H 0.135 0.865 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.040 0.960 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.846 5.045 8.964 11.371 hybrid contribution 1.698 -0.787 -1.628 2.480 sum -3.149 4.257 7.336 9.048 Atomic orbital electron populations 1.21562 0.96239 0.99852 1.00620 1.21475 0.94536 0.98001 1.00493 1.19051 0.91800 0.91647 0.85606 0.97508 1.21953 0.94002 1.37874 1.05315 0.93594 1.25551 1.01531 0.94895 0.95529 1.69982 1.36169 1.38794 1.09739 0.85794 0.81766 0.78325 0.77169 1.20215 1.20844 1.20078 1.61614 1.57869 1.02558 1.04396 1.21974 0.94669 1.00023 0.89416 1.23512 1.04736 0.92270 1.00385 1.86552 1.88357 1.08466 1.24398 1.23233 1.01915 0.99171 0.91747 0.88790 1.21579 1.02694 0.90668 1.03498 1.22035 0.97063 0.88783 0.97778 0.92498 0.94879 0.93540 0.94686 0.91833 0.92861 0.90440 0.95943 0.88907 0.86507 0.92446 0.89841 0.90552 0.95964 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 9.80 71.98 0.71 -4.10 16 2 C -0.11 -4.89 5.19 30.59 0.16 -4.73 16 3 C 0.23 10.86 1.68 44.17 0.07 10.94 16 4 H 0.01 0.38 7.79 -2.39 -0.02 0.36 16 5 C -0.55 -29.21 7.45 25.60 0.19 -29.01 16 6 H 0.05 2.48 6.23 -2.91 -0.02 2.46 16 7 C 0.03 1.36 5.29 84.65 0.45 1.81 16 8 N -0.91 -50.65 11.29 21.45 0.24 -50.41 16 9 Si 0.94 43.10 29.54 68.60 2.03 45.13 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 13 N -0.54 -21.80 3.78 -876.64 -3.32 -25.12 16 14 C 0.07 2.59 4.47 86.47 0.39 2.97 16 15 C -0.06 -1.82 6.69 72.06 0.48 -1.34 16 16 S -0.30 -9.36 21.77 -56.49 -1.23 -10.59 16 17 C -0.03 -0.95 3.33 30.68 0.10 -0.85 16 18 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 19 C -0.13 -3.04 9.24 71.98 0.67 -2.38 16 20 C 0.07 2.76 4.32 86.47 0.37 3.13 16 21 H 0.06 2.05 7.75 -2.39 -0.02 2.03 16 22 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 23 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.03 1.56 6.09 -2.39 -0.01 1.54 16 25 H 0.06 3.32 5.95 -2.39 -0.01 3.31 16 26 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 27 H 0.08 3.01 5.82 -2.38 -0.01 3.00 16 28 H 0.02 0.94 6.66 -2.39 -0.02 0.93 16 29 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.12 3.01 8.14 -2.38 -0.02 2.99 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 34 H 0.02 0.93 7.58 -2.39 -0.02 0.91 16 35 H 0.07 2.60 7.73 -2.39 -0.02 2.58 16 Total: -1.00 -56.05 280.21 2.35 -53.69 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 1.04 Total: 10.85 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: 3.59 Total: -23.56 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -3.08 Total: -75.52 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -9.36 SS G_CDS: -1.23 Total: -10.59 kcal Total: -56.05 2.35 -53.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220954815.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.182 kcal (2) G-P(sol) polarization free energy of solvation -56.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds