Wall clock time and date at job start Mon Mar 30 2020 03:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47134 * 2 1 4 4 H 1.09002 * 109.46800 * 56.77166 * 3 2 1 5 5 C 1.50699 * 109.46957 * 176.76224 * 3 2 1 6 6 H 1.07998 * 119.99730 * 120.00329 * 5 3 2 7 7 C 1.37880 * 120.00580 * 300.00381 * 5 3 2 8 8 N 1.31512 * 120.00411 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 119.99585 * 359.97438 * 7 5 3 10 10 H 1.48508 * 109.46908 * 90.00025 * 9 7 5 11 11 H 1.48498 * 109.47002 * 209.99935 * 9 7 5 12 12 H 1.48502 * 109.47214 * 330.00379 * 9 7 5 13 13 N 1.46899 * 109.47381 * 296.76643 * 3 2 1 14 14 C 1.46471 * 110.99761 * 294.41921 * 13 3 2 15 15 C 1.53243 * 109.79342 * 162.27461 * 14 13 3 16 16 S 1.81744 * 108.58870 * 62.03564 * 15 14 13 17 17 C 1.81906 * 101.87484 * 308.63998 * 16 15 14 18 18 C 1.46461 * 111.00018 * 168.43401 * 13 3 2 19 19 H 1.09005 * 109.40609 * 77.64336 * 18 13 3 20 20 C 1.53003 * 109.40820 * 317.88828 * 18 13 3 21 21 H 1.08995 * 109.47792 * 59.99262 * 1 2 3 22 22 H 1.08995 * 109.47148 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46854 * 299.99440 * 1 2 3 24 24 H 1.09005 * 109.46854 * 240.00560 * 2 1 3 25 25 H 1.09003 * 109.47757 * 120.00401 * 2 1 3 26 26 H 0.96992 * 119.99899 * 179.97438 * 8 7 5 27 27 H 1.09007 * 109.40125 * 282.34674 * 14 13 3 28 28 H 1.08990 * 109.41153 * 42.19046 * 14 13 3 29 29 H 1.08999 * 109.63438 * 181.66272 * 15 14 13 30 30 H 1.08999 * 109.63334 * 302.25620 * 15 14 13 31 31 H 1.09004 * 109.63011 * 291.60516 * 17 16 15 32 32 H 1.08998 * 109.62821 * 171.01892 * 17 16 15 33 33 H 1.08995 * 109.47290 * 67.32561 * 20 18 13 34 34 H 1.08999 * 109.47047 * 187.33399 * 20 18 13 35 35 H 1.09005 * 109.46687 * 307.32614 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6301 1.9728 0.8597 5 6 3.5448 1.4433 0.0802 6 1 4.1274 1.8959 -0.7085 7 6 4.1780 0.8661 1.1606 8 7 5.4913 0.8663 1.2303 9 14 3.1703 0.0838 2.5251 10 1 2.9394 -1.3491 2.2107 11 1 3.9057 0.1964 3.8103 12 1 1.8647 0.7822 2.6390 13 7 1.6152 2.1122 -1.2366 14 6 2.2538 1.5067 -2.4074 15 6 1.4899 1.8994 -3.6764 16 16 1.5666 3.7056 -3.8633 17 6 1.0142 4.2750 -2.2263 18 6 1.8432 3.5567 -1.1562 19 1 2.9009 3.7659 -1.3165 20 6 1.4315 4.0601 0.2287 21 1 -0.3634 0.5139 -0.8898 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 5.9366 0.4606 1.9905 27 1 3.2830 1.8583 -2.4808 28 1 2.2484 0.4218 -2.3024 29 1 1.9496 1.4237 -4.5427 30 1 0.4502 1.5836 -3.5904 31 1 -0.0412 4.0372 -2.0928 32 1 1.1633 5.3516 -2.1437 33 1 2.1101 3.6549 0.9792 34 1 1.4769 5.1490 0.2478 35 1 0.4138 3.7352 0.4456 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251354344.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:56 Heat of formation + Delta-G solvation = 5.746707 kcal Electronic energy + Delta-G solvation = -15359.263883 eV Core-core repulsion = 13097.552170 eV Total energy + Delta-G solvation = -2261.711713 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.49032 -33.94382 -32.28227 -31.80601 -29.19391 -26.83654 -26.35953 -22.76354 -22.30569 -20.69238 -18.85096 -16.71673 -16.34875 -15.40663 -14.86101 -14.53137 -13.92835 -13.79192 -13.00233 -12.81841 -12.63682 -12.27975 -12.16131 -11.75232 -11.68534 -11.63480 -11.17623 -11.03301 -10.74829 -10.54883 -10.32873 -10.20720 -9.65466 -9.56454 -9.30111 -9.12016 -8.61643 -7.43056 -7.22492 -6.16661 -4.17940 2.19617 2.89617 3.20562 3.31696 3.33338 4.31600 4.59598 5.13190 5.29007 5.42107 5.55482 5.67077 5.70635 5.78802 5.93671 5.97257 5.99943 6.08893 6.14207 6.28573 6.29041 6.58951 6.63583 6.69833 6.74734 6.76027 6.88487 7.04167 7.18015 7.48696 7.98623 8.05704 8.39751 8.85996 9.46244 10.96101 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.031924 B = 0.010048 C = 0.009594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.876004 B = 2785.826815 C = 2917.894580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C 0.179 3.821 4 H 0.051 0.949 5 C -0.545 4.545 6 H 0.076 0.924 7 C 0.076 3.924 8 N -0.895 5.895 9 Si 0.884 3.116 10 H -0.278 1.278 11 H -0.298 1.298 12 H -0.264 1.264 13 N -0.534 5.534 14 C 0.063 3.937 15 C -0.069 4.069 16 S -0.300 6.300 17 C -0.062 4.062 18 C 0.092 3.908 19 H 0.057 0.943 20 C -0.143 4.143 21 H 0.060 0.940 22 H 0.033 0.967 23 H 0.041 0.959 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.264 0.736 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.453 2.557 -4.524 10.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.161 4.161 3 C 0.072 3.928 4 H 0.068 0.932 5 C -0.583 4.583 6 H 0.094 0.906 7 C -0.127 4.127 8 N -0.533 5.533 9 Si 0.715 3.285 10 H -0.206 1.206 11 H -0.226 1.226 12 H -0.189 1.189 13 N -0.258 5.258 14 C -0.067 4.067 15 C -0.217 4.217 16 S -0.074 6.074 17 C -0.211 4.211 18 C -0.019 4.019 19 H 0.075 0.925 20 C -0.202 4.202 21 H 0.079 0.921 22 H 0.052 0.948 23 H 0.060 0.940 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.488 3.054 -5.402 11.337 hybrid contribution 0.182 -1.152 1.861 2.196 sum -9.305 1.902 -3.541 10.136 Atomic orbital electron populations 1.21717 0.97366 0.99339 1.01562 1.21976 0.94060 0.99462 1.00598 1.19858 0.94486 0.90242 0.88186 0.93164 1.21611 0.90269 1.38575 1.07880 0.90642 1.24973 0.94653 0.95335 0.97787 1.69909 1.07909 1.44664 1.30806 0.86899 0.80407 0.79986 0.81221 1.20550 1.22572 1.18900 1.61584 1.58574 1.01742 1.03927 1.22052 0.96078 1.00479 0.88098 1.23555 1.04228 0.92228 1.01715 1.86549 1.89849 1.08677 1.22276 1.23599 1.02730 1.02018 0.92712 1.21483 0.97742 0.88856 0.93775 0.92518 1.21931 1.01959 0.99478 0.96842 0.92065 0.94813 0.93989 0.92322 0.93480 0.92622 0.92949 0.89710 0.88568 0.89874 0.89798 0.88569 0.90512 0.93271 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.79 37.16 0.36 -2.11 16 2 C -0.12 -2.54 4.82 -26.73 -0.13 -2.67 16 3 C 0.18 3.91 0.81 -68.86 -0.06 3.85 16 4 H 0.05 1.14 4.63 -51.93 -0.24 0.90 16 5 C -0.54 -14.22 7.85 -34.44 -0.27 -14.49 16 6 H 0.08 2.19 6.47 -52.49 -0.34 1.85 16 7 C 0.08 2.08 5.45 -17.82 -0.10 1.98 16 8 N -0.90 -26.52 13.96 55.43 0.77 -25.75 16 9 Si 0.88 21.19 24.40 -169.99 -4.15 17.04 16 10 H -0.28 -6.57 6.84 56.52 0.39 -6.19 16 11 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.26 -6.02 6.53 56.52 0.37 -5.65 16 13 N -0.53 -10.16 3.63 -220.49 -0.80 -10.96 16 14 C 0.06 1.16 4.49 -3.93 -0.02 1.14 16 15 C -0.07 -1.06 6.67 37.28 0.25 -0.81 16 16 S -0.30 -4.85 22.39 -107.50 -2.41 -7.26 16 17 C -0.06 -0.95 5.96 37.28 0.22 -0.73 16 18 C 0.09 1.65 2.07 -67.82 -0.14 1.51 16 19 H 0.06 1.18 7.55 -51.93 -0.39 0.79 16 20 C -0.14 -2.41 7.99 37.16 0.30 -2.12 16 21 H 0.06 1.02 7.70 -51.93 -0.40 0.62 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 1.20 6.12 -51.93 -0.32 0.88 16 25 H 0.05 1.05 3.23 -51.93 -0.17 0.88 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.05 1.11 6.68 -51.93 -0.35 0.76 16 28 H 0.08 1.59 5.82 -51.93 -0.30 1.29 16 29 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.08 1.50 6.48 -51.93 -0.34 1.16 16 34 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 35 H 0.05 0.89 8.10 -51.93 -0.42 0.47 16 LS Contribution 268.83 15.07 4.05 4.05 Total: -1.00 -27.73 268.83 -7.51 -35.24 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.40 Total: 2.08 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 0.42 Total: -14.45 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: -0.03 Total: -36.71 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.15 Total: 17.04 kcal Atomic # 16 Polarization: -4.85 SS G_CDS: -2.41 Total: -7.26 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.73 -7.51 -35.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251354344.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.990 kcal (2) G-P(sol) polarization free energy of solvation -27.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds