Wall clock time and date at job start Mon Mar 30 2020 03:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47134 * 2 1 4 4 H 1.09002 * 109.46800 * 56.77166 * 3 2 1 5 5 C 1.50699 * 109.46957 * 176.76224 * 3 2 1 6 6 H 1.07998 * 119.99730 * 120.00329 * 5 3 2 7 7 C 1.37880 * 120.00580 * 300.00381 * 5 3 2 8 8 N 1.31512 * 120.00411 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 119.99585 * 359.97438 * 7 5 3 10 10 H 1.48508 * 109.46908 * 90.00025 * 9 7 5 11 11 H 1.48498 * 109.47002 * 209.99935 * 9 7 5 12 12 H 1.48502 * 109.47214 * 330.00379 * 9 7 5 13 13 N 1.46899 * 109.47381 * 296.76643 * 3 2 1 14 14 C 1.46471 * 110.99761 * 294.41921 * 13 3 2 15 15 C 1.53243 * 109.79342 * 162.27461 * 14 13 3 16 16 S 1.81744 * 108.58870 * 62.03564 * 15 14 13 17 17 C 1.81906 * 101.87484 * 308.63998 * 16 15 14 18 18 C 1.46461 * 111.00018 * 168.43401 * 13 3 2 19 19 H 1.09005 * 109.40609 * 77.64336 * 18 13 3 20 20 C 1.53003 * 109.40820 * 317.88828 * 18 13 3 21 21 H 1.08995 * 109.47792 * 59.99262 * 1 2 3 22 22 H 1.08995 * 109.47148 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46854 * 299.99440 * 1 2 3 24 24 H 1.09005 * 109.46854 * 240.00560 * 2 1 3 25 25 H 1.09003 * 109.47757 * 120.00401 * 2 1 3 26 26 H 0.96992 * 119.99899 * 179.97438 * 8 7 5 27 27 H 1.09007 * 109.40125 * 282.34674 * 14 13 3 28 28 H 1.08990 * 109.41153 * 42.19046 * 14 13 3 29 29 H 1.08999 * 109.63438 * 181.66272 * 15 14 13 30 30 H 1.08999 * 109.63334 * 302.25620 * 15 14 13 31 31 H 1.09004 * 109.63011 * 291.60516 * 17 16 15 32 32 H 1.08998 * 109.62821 * 171.01892 * 17 16 15 33 33 H 1.08995 * 109.47290 * 67.32561 * 20 18 13 34 34 H 1.08999 * 109.47047 * 187.33399 * 20 18 13 35 35 H 1.09005 * 109.46687 * 307.32614 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6301 1.9728 0.8597 5 6 3.5448 1.4433 0.0802 6 1 4.1274 1.8959 -0.7085 7 6 4.1780 0.8661 1.1606 8 7 5.4913 0.8663 1.2303 9 14 3.1703 0.0838 2.5251 10 1 2.9394 -1.3491 2.2107 11 1 3.9057 0.1964 3.8103 12 1 1.8647 0.7822 2.6390 13 7 1.6152 2.1122 -1.2366 14 6 2.2538 1.5067 -2.4074 15 6 1.4899 1.8994 -3.6764 16 16 1.5666 3.7056 -3.8633 17 6 1.0142 4.2750 -2.2263 18 6 1.8432 3.5567 -1.1562 19 1 2.9009 3.7659 -1.3165 20 6 1.4315 4.0601 0.2287 21 1 -0.3634 0.5139 -0.8898 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 5.9366 0.4606 1.9905 27 1 3.2830 1.8583 -2.4808 28 1 2.2484 0.4218 -2.3024 29 1 1.9496 1.4237 -4.5427 30 1 0.4502 1.5836 -3.5904 31 1 -0.0412 4.0372 -2.0928 32 1 1.1633 5.3516 -2.1437 33 1 2.1101 3.6549 0.9792 34 1 1.4769 5.1490 0.2478 35 1 0.4138 3.7352 0.4456 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251354344.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:56 Heat of formation + Delta-G solvation = -11.877877 kcal Electronic energy + Delta-G solvation = -15360.028142 eV Core-core repulsion = 13097.552170 eV Total energy + Delta-G solvation = -2262.475972 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.08573 -35.61384 -34.07500 -33.41736 -30.69544 -28.33844 -27.98494 -24.51557 -23.77171 -22.22130 -20.59255 -18.60676 -17.81666 -17.00837 -16.53389 -16.15448 -15.47167 -15.23011 -14.72011 -14.30813 -14.24988 -13.82628 -13.58268 -13.28218 -13.22198 -13.02762 -12.74736 -12.65476 -12.21935 -12.16081 -12.03325 -11.78781 -11.42528 -11.31961 -10.98921 -10.68454 -10.53894 -9.04311 -8.60815 -8.31052 -6.35115 0.92661 1.29561 1.34628 1.44603 1.62233 2.29890 3.04365 3.08217 3.91037 4.02336 4.23030 4.28948 4.31595 4.40344 4.43402 4.56112 4.63486 4.65167 4.79493 4.81560 4.90178 5.07055 5.11685 5.17924 5.22488 5.28211 5.38457 5.48389 5.53294 5.61560 6.14207 6.34650 6.47178 6.73056 7.32966 8.85657 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.031924 B = 0.010048 C = 0.009594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.876004 B = 2785.826815 C = 2917.894580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.125 4.125 3 C 0.184 3.816 4 H 0.051 0.949 5 C -0.533 4.533 6 H 0.030 0.970 7 C 0.017 3.983 8 N -0.949 5.949 9 Si 0.944 3.056 10 H -0.270 1.270 11 H -0.304 1.304 12 H -0.241 1.241 13 N -0.520 5.520 14 C 0.066 3.934 15 C -0.056 4.056 16 S -0.317 6.317 17 C -0.050 4.050 18 C 0.088 3.912 19 H 0.016 0.984 20 C -0.138 4.138 21 H 0.069 0.931 22 H 0.054 0.946 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.033 0.967 26 H 0.263 0.737 27 H 0.013 0.987 28 H 0.081 0.919 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.653 2.532 -4.613 13.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.163 4.163 3 C 0.076 3.924 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.048 0.952 7 C -0.181 4.181 8 N -0.589 5.589 9 Si 0.772 3.228 10 H -0.196 1.196 11 H -0.233 1.233 12 H -0.164 1.164 13 N -0.244 5.244 14 C -0.064 4.064 15 C -0.205 4.205 16 S -0.090 6.090 17 C -0.198 4.198 18 C -0.022 4.022 19 H 0.035 0.965 20 C -0.197 4.197 21 H 0.088 0.912 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.031 0.969 28 H 0.099 0.901 29 H 0.131 0.869 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.134 0.866 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.718 3.041 -5.514 14.191 hybrid contribution 1.262 -1.074 1.795 2.443 sum -11.456 1.966 -3.719 12.204 Atomic orbital electron populations 1.21625 0.94117 1.01046 1.02218 1.21914 0.96899 0.97673 0.99818 1.19743 0.91196 0.91818 0.89657 0.93107 1.21851 0.92741 1.36570 1.06006 0.95197 1.25798 0.95476 0.96295 1.00512 1.70070 1.10004 1.46898 1.31946 0.85915 0.79655 0.79608 0.77624 1.19592 1.23254 1.16411 1.61689 1.57507 1.02270 1.02929 1.22001 0.94626 1.00138 0.89604 1.23490 1.04793 0.91866 1.00340 1.86665 1.90204 1.09262 1.22856 1.23553 1.02802 1.02746 0.90704 1.21543 0.96228 0.88523 0.95897 0.96544 1.21869 1.01811 1.01156 0.94818 0.91196 0.92651 0.93503 0.92655 0.94837 0.92786 0.96864 0.90088 0.86860 0.88002 0.87994 0.86568 0.93779 0.90569 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 9.79 71.98 0.70 -3.39 16 2 C -0.13 -4.92 4.82 30.59 0.15 -4.78 16 3 C 0.18 7.89 0.81 44.17 0.04 7.93 16 4 H 0.05 2.22 4.63 -2.39 -0.01 2.21 16 5 C -0.53 -28.80 7.85 25.60 0.20 -28.60 16 6 H 0.03 1.85 6.47 -2.91 -0.02 1.84 16 7 C 0.02 0.96 5.45 84.66 0.46 1.42 16 8 N -0.95 -58.65 13.96 21.45 0.30 -58.35 16 9 Si 0.94 43.77 24.40 68.60 1.67 45.45 16 10 H -0.27 -12.03 6.84 99.48 0.68 -11.35 16 11 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 12 H -0.24 -10.12 6.53 99.48 0.65 -9.47 16 13 N -0.52 -19.29 3.63 -851.50 -3.09 -22.37 16 14 C 0.07 2.44 4.49 86.47 0.39 2.83 16 15 C -0.06 -1.64 6.67 72.06 0.48 -1.16 16 16 S -0.32 -9.66 22.39 -56.49 -1.26 -10.93 16 17 C -0.05 -1.39 5.96 72.06 0.43 -0.96 16 18 C 0.09 3.12 2.07 45.08 0.09 3.21 16 19 H 0.02 0.71 7.55 -2.38 -0.02 0.70 16 20 C -0.14 -4.41 7.99 71.98 0.58 -3.83 16 21 H 0.07 2.03 7.70 -2.39 -0.02 2.02 16 22 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 24 H 0.05 2.18 6.12 -2.38 -0.01 2.17 16 25 H 0.03 1.41 3.23 -2.39 -0.01 1.40 16 26 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 27 H 0.01 0.58 6.68 -2.38 -0.02 0.57 16 28 H 0.08 3.03 5.82 -2.39 -0.01 3.01 16 29 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 30 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.04 1.69 6.48 -2.39 -0.02 1.68 16 34 H 0.08 2.00 8.13 -2.39 -0.02 1.98 16 35 H 0.07 2.08 8.10 -2.38 -0.02 2.06 16 Total: -1.00 -62.14 268.83 2.12 -60.02 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.98 Total: 13.51 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 3.52 Total: -27.32 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -2.79 Total: -80.73 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.67 Total: 45.45 kcal Atomic # 16 Polarization: -9.66 SS G_CDS: -1.26 Total: -10.93 kcal Total: -62.14 2.12 -60.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251354344.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.143 kcal (2) G-P(sol) polarization free energy of solvation -62.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds