Wall clock time and date at job start Mon Mar 30 2020 03:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46905 * 111.00044 * 2 1 4 4 H 1.08998 * 109.60793 * 281.09645 * 3 2 1 5 5 C 1.53856 * 109.60559 * 41.26015 * 3 2 1 6 6 C 1.55137 * 106.89733 * 167.17571 * 5 3 2 7 7 S 1.83468 * 102.20273 * 317.87997 * 6 5 3 8 8 C 1.54274 * 109.60585 * 160.75471 * 3 2 1 9 9 C 1.46899 * 110.99761 * 236.05053 * 2 1 3 10 10 C 1.53007 * 109.46993 * 186.09020 * 9 2 1 11 11 C 1.53004 * 109.47308 * 66.08968 * 9 2 1 12 12 C 1.50701 * 109.47207 * 306.08891 * 9 2 1 13 13 H 1.07996 * 119.99739 * 359.86284 * 12 9 2 14 14 C 1.37877 * 120.00167 * 179.86433 * 12 9 2 15 15 N 1.31511 * 119.99979 * 170.73634 * 14 12 9 16 16 Si 1.86803 * 119.99850 * 350.73407 * 14 12 9 17 17 H 1.48500 * 109.47227 * 266.71968 * 16 14 12 18 18 H 1.48505 * 109.46709 * 146.72460 * 16 14 12 19 19 H 1.48494 * 109.46990 * 26.72343 * 16 14 12 20 20 H 1.08997 * 109.47525 * 183.95353 * 1 2 3 21 21 H 1.09004 * 109.46772 * 303.94977 * 1 2 3 22 22 H 1.08999 * 109.47542 * 63.94668 * 1 2 3 23 23 H 1.08998 * 109.97261 * 286.52994 * 5 3 2 24 24 H 1.08993 * 109.97974 * 47.81324 * 5 3 2 25 25 H 1.09000 * 110.85488 * 199.70465 * 6 5 3 26 26 H 1.09000 * 111.03738 * 76.13268 * 6 5 3 27 27 H 1.09002 * 110.40396 * 330.92220 * 8 3 2 28 28 H 1.09000 * 110.39921 * 93.22338 * 8 3 2 29 29 H 1.09005 * 109.46556 * 158.91850 * 10 9 2 30 30 H 1.09000 * 109.46885 * 278.91876 * 10 9 2 31 31 H 1.09000 * 109.47045 * 38.92068 * 10 9 2 32 32 H 1.09000 * 109.46689 * 299.99880 * 11 9 2 33 33 H 1.08994 * 109.47055 * 60.00258 * 11 9 2 34 34 H 1.09004 * 109.47144 * 179.97438 * 11 9 2 35 35 H 0.97001 * 119.99795 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.9420 1.7838 -1.0076 5 6 1.1633 2.2439 0.9558 6 6 1.9517 3.5638 1.1634 7 16 3.6750 2.9614 1.3463 8 6 3.4619 1.3630 0.4790 9 6 1.9953 -0.7659 -1.1377 10 6 3.5173 -0.8717 -1.0208 11 6 1.6323 -0.0549 -2.4429 12 6 1.3940 -2.1477 -1.1343 13 1 0.6928 -2.4296 -0.3628 14 6 1.7390 -3.0522 -2.1161 15 7 1.3618 -4.3080 -2.0152 16 14 2.7423 -2.4937 -3.5895 17 1 1.8278 -2.1215 -4.6988 18 1 3.6312 -3.5986 -4.0305 19 1 3.5654 -1.3173 -3.2107 20 1 -0.3634 -1.0252 0.0709 21 1 -0.3633 0.5739 0.8525 22 1 -0.3634 0.4513 -0.9232 23 1 0.1902 2.4571 0.5134 24 1 1.0349 1.7329 1.9100 25 1 1.6213 4.0751 2.0675 26 1 1.8588 4.2158 0.2948 27 1 3.6330 0.5330 1.1645 28 1 4.1393 1.2975 -0.3724 29 1 3.8692 -1.7165 -1.6130 30 1 3.9746 0.0464 -1.3896 31 1 3.7920 -1.0205 0.0235 32 1 0.5481 0.0204 -2.5261 33 1 2.0672 0.9445 -2.4454 34 1 2.0233 -0.6230 -3.2870 35 1 1.6049 -4.9443 -2.7058 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259772720.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:47 Heat of formation + Delta-G solvation = 36.923650 kcal Electronic energy + Delta-G solvation = -15354.576943 eV Core-core repulsion = 13094.217164 eV Total energy + Delta-G solvation = -2260.359779 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.99135 -34.82272 -32.18871 -30.86392 -29.48612 -26.38208 -25.02550 -24.39832 -23.96221 -20.40003 -18.77188 -16.68522 -16.06534 -15.69552 -15.29816 -14.62372 -13.91303 -13.63750 -13.55379 -12.78598 -12.68206 -12.38594 -12.25923 -12.11002 -11.66996 -11.45887 -11.32887 -11.06523 -10.92251 -10.51681 -10.14529 -10.12276 -10.10453 -9.72842 -8.95766 -8.86318 -8.60098 -7.54210 -7.43970 -6.14031 -4.11932 2.02073 2.55845 3.22004 3.30905 3.36220 4.33891 4.51403 4.80933 4.99124 5.11257 5.18797 5.35684 5.39202 5.60998 5.78732 5.83584 5.95574 6.04564 6.08040 6.17500 6.23054 6.24535 6.34822 6.51565 6.61761 6.66620 6.83484 6.94122 7.22402 7.58898 7.87227 7.99884 8.57821 8.92469 9.49211 10.98510 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.043034 B = 0.008870 C = 0.008187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.496723 B = 3156.110020 C = 3419.055148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.510 5.510 3 C 0.068 3.932 4 H 0.055 0.945 5 C -0.124 4.124 6 C -0.067 4.067 7 S -0.324 6.324 8 C -0.053 4.053 9 C 0.207 3.793 10 C -0.142 4.142 11 C -0.184 4.184 12 C -0.502 4.502 13 H 0.083 0.917 14 C 0.073 3.927 15 N -0.894 5.894 16 Si 0.873 3.127 17 H -0.289 1.289 18 H -0.300 1.300 19 H -0.244 1.244 20 H 0.084 0.916 21 H 0.050 0.950 22 H 0.018 0.982 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.056 0.944 30 H 0.028 0.972 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.033 0.967 34 H 0.048 0.952 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.661 12.840 3.108 13.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.234 5.234 3 C -0.043 4.043 4 H 0.073 0.927 5 C -0.163 4.163 6 C -0.216 4.216 7 S -0.100 6.100 8 C -0.201 4.201 9 C 0.118 3.882 10 C -0.200 4.200 11 C -0.242 4.242 12 C -0.540 4.540 13 H 0.101 0.899 14 C -0.129 4.129 15 N -0.532 5.532 16 Si 0.704 3.296 17 H -0.216 1.216 18 H -0.228 1.228 19 H -0.169 1.169 20 H 0.103 0.897 21 H 0.069 0.931 22 H 0.036 0.964 23 H 0.099 0.901 24 H 0.106 0.894 25 H 0.116 0.884 26 H 0.104 0.896 27 H 0.125 0.875 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.776 12.905 3.990 13.624 hybrid contribution -0.761 0.028 -2.329 2.450 sum 1.015 12.933 1.660 13.079 Atomic orbital electron populations 1.22394 0.87967 1.03274 0.98246 1.62368 1.07573 1.08675 1.44771 1.22495 0.92092 0.91588 0.98083 0.92724 1.22718 0.98930 0.93102 1.01527 1.24126 0.92691 0.99871 1.04865 1.87428 1.18588 1.25945 1.78015 1.24581 0.99226 0.94231 1.02051 1.19058 0.92132 0.93294 0.83752 1.22610 0.97034 0.99109 1.01203 1.22958 1.01147 0.98726 1.01383 1.20826 1.27105 0.93509 1.12586 0.89861 1.24940 0.95447 0.94521 0.98006 1.69906 1.46800 1.02268 1.34182 0.87489 0.80855 0.78078 0.83174 1.21632 1.22832 1.16921 0.89733 0.93107 0.96380 0.90109 0.89436 0.88359 0.89630 0.87466 0.88418 0.92563 0.95289 0.92386 0.92845 0.94807 0.93379 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 8.21 60.06 0.49 1.02 16 2 N -0.51 -9.75 4.48 -219.24 -0.98 -10.73 16 3 C 0.07 1.09 2.21 -66.60 -0.15 0.94 16 4 H 0.06 0.91 5.58 -51.93 -0.29 0.62 16 5 C -0.12 -1.63 4.37 -25.15 -0.11 -1.74 16 6 C -0.07 -0.79 7.38 38.29 0.28 -0.51 16 7 S -0.32 -4.76 23.26 -107.50 -2.50 -7.26 16 8 C -0.05 -0.84 5.01 37.82 0.19 -0.65 16 9 C 0.21 4.52 0.43 -132.75 -0.06 4.46 16 10 C -0.14 -2.96 5.91 37.16 0.22 -2.74 16 11 C -0.18 -3.83 7.06 37.16 0.26 -3.56 16 12 C -0.50 -13.27 7.98 -34.44 -0.27 -13.54 16 13 H 0.08 2.41 6.50 -52.49 -0.34 2.07 16 14 C 0.07 2.02 5.31 -17.82 -0.09 1.92 16 15 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 16 Si 0.87 20.96 22.68 -169.99 -3.86 17.11 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 19 H -0.24 -5.39 4.46 56.52 0.25 -5.14 16 20 H 0.08 1.71 6.12 -51.93 -0.32 1.40 16 21 H 0.05 0.76 6.08 -51.93 -0.32 0.44 16 22 H 0.02 0.31 6.47 -51.93 -0.34 -0.02 16 23 H 0.08 0.96 7.26 -51.93 -0.38 0.59 16 24 H 0.09 1.20 7.86 -51.93 -0.41 0.79 16 25 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.11 1.82 6.95 -51.93 -0.36 1.46 16 28 H 0.10 1.56 5.85 -51.93 -0.30 1.26 16 29 H 0.06 1.26 4.34 -51.93 -0.23 1.03 16 30 H 0.03 0.54 5.62 -51.93 -0.29 0.25 16 31 H 0.06 1.17 6.64 -51.93 -0.34 0.83 16 32 H 0.05 1.10 6.55 -51.93 -0.34 0.75 16 33 H 0.03 0.62 6.05 -51.93 -0.31 0.31 16 34 H 0.05 1.06 2.64 -51.93 -0.14 0.92 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 252.06 15.07 3.80 3.80 Total: -1.00 -28.28 252.06 -6.84 -35.12 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -4.83 Total: 2.18 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: 0.76 Total: -14.41 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: -0.21 Total: -36.52 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -3.86 Total: 17.11 kcal Atomic # 16 Polarization: -4.76 SS G_CDS: -2.50 Total: -7.26 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.28 -6.84 -35.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259772720.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.043 kcal (2) G-P(sol) polarization free energy of solvation -28.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds