Wall clock time and date at job start Mon Mar 30 2020 03:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46905 * 111.00044 * 2 1 4 4 H 1.08998 * 109.60793 * 281.09645 * 3 2 1 5 5 C 1.53856 * 109.60559 * 41.26015 * 3 2 1 6 6 C 1.55137 * 106.89733 * 167.17571 * 5 3 2 7 7 S 1.83468 * 102.20273 * 317.87997 * 6 5 3 8 8 C 1.54274 * 109.60585 * 160.75471 * 3 2 1 9 9 C 1.46899 * 110.99761 * 236.05053 * 2 1 3 10 10 C 1.53007 * 109.46993 * 186.09020 * 9 2 1 11 11 C 1.53004 * 109.47308 * 66.08968 * 9 2 1 12 12 C 1.50701 * 109.47207 * 306.08891 * 9 2 1 13 13 H 1.07996 * 119.99739 * 359.86284 * 12 9 2 14 14 C 1.37877 * 120.00167 * 179.86433 * 12 9 2 15 15 N 1.31511 * 119.99979 * 170.73634 * 14 12 9 16 16 Si 1.86803 * 119.99850 * 350.73407 * 14 12 9 17 17 H 1.48500 * 109.47227 * 266.71968 * 16 14 12 18 18 H 1.48505 * 109.46709 * 146.72460 * 16 14 12 19 19 H 1.48494 * 109.46990 * 26.72343 * 16 14 12 20 20 H 1.08997 * 109.47525 * 183.95353 * 1 2 3 21 21 H 1.09004 * 109.46772 * 303.94977 * 1 2 3 22 22 H 1.08999 * 109.47542 * 63.94668 * 1 2 3 23 23 H 1.08998 * 109.97261 * 286.52994 * 5 3 2 24 24 H 1.08993 * 109.97974 * 47.81324 * 5 3 2 25 25 H 1.09000 * 110.85488 * 199.70465 * 6 5 3 26 26 H 1.09000 * 111.03738 * 76.13268 * 6 5 3 27 27 H 1.09002 * 110.40396 * 330.92220 * 8 3 2 28 28 H 1.09000 * 110.39921 * 93.22338 * 8 3 2 29 29 H 1.09005 * 109.46556 * 158.91850 * 10 9 2 30 30 H 1.09000 * 109.46885 * 278.91876 * 10 9 2 31 31 H 1.09000 * 109.47045 * 38.92068 * 10 9 2 32 32 H 1.09000 * 109.46689 * 299.99880 * 11 9 2 33 33 H 1.08994 * 109.47055 * 60.00258 * 11 9 2 34 34 H 1.09004 * 109.47144 * 179.97438 * 11 9 2 35 35 H 0.97001 * 119.99795 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.9420 1.7838 -1.0076 5 6 1.1633 2.2439 0.9558 6 6 1.9517 3.5638 1.1634 7 16 3.6750 2.9614 1.3463 8 6 3.4619 1.3630 0.4790 9 6 1.9953 -0.7659 -1.1377 10 6 3.5173 -0.8717 -1.0208 11 6 1.6323 -0.0549 -2.4429 12 6 1.3940 -2.1477 -1.1343 13 1 0.6928 -2.4296 -0.3628 14 6 1.7390 -3.0522 -2.1161 15 7 1.3618 -4.3080 -2.0152 16 14 2.7423 -2.4937 -3.5895 17 1 1.8278 -2.1215 -4.6988 18 1 3.6312 -3.5986 -4.0305 19 1 3.5654 -1.3173 -3.2107 20 1 -0.3634 -1.0252 0.0709 21 1 -0.3633 0.5739 0.8525 22 1 -0.3634 0.4513 -0.9232 23 1 0.1902 2.4571 0.5134 24 1 1.0349 1.7329 1.9100 25 1 1.6213 4.0751 2.0675 26 1 1.8588 4.2158 0.2948 27 1 3.6330 0.5330 1.1645 28 1 4.1393 1.2975 -0.3724 29 1 3.8692 -1.7165 -1.6130 30 1 3.9746 0.0464 -1.3896 31 1 3.7920 -1.0205 0.0235 32 1 0.5481 0.0204 -2.5261 33 1 2.0672 0.9445 -2.4454 34 1 2.0233 -0.6230 -3.2870 35 1 1.6049 -4.9443 -2.7058 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259772720.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:47 Heat of formation + Delta-G solvation = 17.428927 kcal Electronic energy + Delta-G solvation = -15355.422297 eV Core-core repulsion = 13094.217164 eV Total energy + Delta-G solvation = -2261.205134 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.48365 -36.28461 -34.03520 -32.45880 -30.75106 -28.02010 -26.89019 -25.94078 -25.12303 -21.87396 -20.29533 -18.02796 -17.99974 -17.09020 -16.79164 -16.06175 -15.27056 -15.26381 -14.96391 -14.44904 -14.14790 -13.87514 -13.85553 -13.64257 -13.22533 -12.81600 -12.59623 -12.49209 -12.27007 -12.07709 -11.93356 -11.83743 -11.53347 -11.05975 -10.76459 -10.74246 -10.50691 -8.95742 -8.64804 -8.27347 -6.27879 0.93681 1.31090 1.36116 1.44552 1.46163 2.32839 3.05565 3.18201 3.72772 3.84599 4.02952 4.12192 4.27926 4.38720 4.40775 4.52686 4.59666 4.66220 4.74627 4.77271 4.81339 4.84207 4.94128 5.01419 5.04955 5.14520 5.27631 5.33339 5.53668 5.78264 6.07876 6.38694 6.72464 6.79493 7.37544 8.88974 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.043034 B = 0.008870 C = 0.008187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.496723 B = 3156.110020 C = 3419.055148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.524 5.524 3 C 0.068 3.932 4 H 0.058 0.942 5 C -0.120 4.120 6 C -0.053 4.053 7 S -0.345 6.345 8 C -0.051 4.051 9 C 0.205 3.795 10 C -0.140 4.140 11 C -0.181 4.181 12 C -0.495 4.495 13 H 0.043 0.957 14 C 0.016 3.984 15 N -0.948 5.948 16 Si 0.928 3.072 17 H -0.288 1.288 18 H -0.310 1.310 19 H -0.208 1.208 20 H 0.048 0.952 21 H 0.083 0.917 22 H 0.023 0.977 23 H 0.100 0.900 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.039 0.961 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.038 0.962 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.127 16.082 2.906 16.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.247 5.247 3 C -0.042 4.042 4 H 0.076 0.924 5 C -0.158 4.158 6 C -0.201 4.201 7 S -0.121 6.121 8 C -0.199 4.199 9 C 0.115 3.885 10 C -0.198 4.198 11 C -0.240 4.240 12 C -0.533 4.533 13 H 0.061 0.939 14 C -0.181 4.181 15 N -0.588 5.588 16 Si 0.757 3.243 17 H -0.216 1.216 18 H -0.240 1.240 19 H -0.131 1.131 20 H 0.067 0.933 21 H 0.101 0.899 22 H 0.042 0.958 23 H 0.118 0.882 24 H 0.100 0.900 25 H 0.139 0.861 26 H 0.121 0.879 27 H 0.109 0.891 28 H 0.115 0.885 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.243 16.188 3.807 16.780 hybrid contribution -0.987 -0.942 -2.125 2.525 sum 1.256 15.246 1.682 15.390 Atomic orbital electron populations 1.22335 0.87466 1.01673 0.99939 1.62234 1.08158 1.10823 1.43515 1.22599 0.92557 0.89916 0.99108 0.92447 1.22670 0.99452 0.93123 1.00566 1.24242 0.89691 0.99296 1.06829 1.87550 1.21481 1.25136 1.77919 1.24417 0.99134 0.94604 1.01741 1.18924 0.92538 0.91364 0.85677 1.22545 0.96254 0.99746 1.01214 1.22864 1.01312 0.99996 0.99777 1.21118 1.25505 0.95977 1.10716 0.93894 1.25719 0.97025 0.94381 1.00997 1.70062 1.49467 1.03820 1.35482 0.86600 0.79726 0.78544 0.79434 1.21620 1.23958 1.13132 0.93301 0.89887 0.95821 0.88217 0.89973 0.86110 0.87874 0.89109 0.88513 0.94239 0.92452 0.92402 0.93051 0.91762 0.94406 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.17 8.21 127.69 1.05 2.22 16 2 N -0.52 -19.18 4.48 -847.53 -3.80 -22.98 16 3 C 0.07 1.96 2.21 45.64 0.10 2.06 16 4 H 0.06 1.66 5.58 -2.39 -0.01 1.65 16 5 C -0.12 -2.66 4.37 31.62 0.14 -2.52 16 6 C -0.05 -1.01 7.38 72.71 0.54 -0.47 16 7 S -0.35 -9.09 23.26 -56.49 -1.31 -10.41 16 8 C -0.05 -1.48 5.01 72.41 0.36 -1.12 16 9 C 0.20 8.68 0.43 2.79 0.00 8.68 16 10 C -0.14 -5.58 5.91 71.98 0.43 -5.15 16 11 C -0.18 -7.04 7.06 71.98 0.51 -6.53 16 12 C -0.49 -26.70 7.98 25.60 0.20 -26.50 16 13 H 0.04 2.61 6.50 -2.91 -0.02 2.59 16 14 C 0.02 0.89 5.31 84.66 0.45 1.34 16 15 N -0.95 -58.60 13.96 21.45 0.30 -58.30 16 16 Si 0.93 43.23 22.68 68.60 1.56 44.79 16 17 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 18 H -0.31 -14.90 7.11 99.48 0.71 -14.19 16 19 H -0.21 -8.44 4.46 99.48 0.44 -8.00 16 20 H 0.05 2.03 6.12 -2.39 -0.01 2.01 16 21 H 0.08 2.29 6.08 -2.39 -0.01 2.27 16 22 H 0.02 0.78 6.47 -2.39 -0.02 0.76 16 23 H 0.10 1.89 7.26 -2.39 -0.02 1.88 16 24 H 0.08 1.96 7.86 -2.39 -0.02 1.94 16 25 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.10 1.69 8.14 -2.39 -0.02 1.68 16 27 H 0.09 2.95 6.95 -2.39 -0.02 2.93 16 28 H 0.10 2.80 5.85 -2.39 -0.01 2.78 16 29 H 0.04 1.69 4.34 -2.38 -0.01 1.68 16 30 H 0.06 1.95 5.62 -2.39 -0.01 1.94 16 31 H 0.06 2.28 6.64 -2.39 -0.02 2.26 16 32 H 0.05 1.99 6.55 -2.39 -0.02 1.97 16 33 H 0.06 2.10 6.05 -2.39 -0.01 2.09 16 34 H 0.04 1.55 2.64 -2.38 -0.01 1.54 16 35 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -62.65 252.06 1.35 -61.30 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.83 Total: 13.59 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 3.78 Total: -28.00 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -3.50 Total: -81.27 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.56 Total: 44.79 kcal Atomic # 16 Polarization: -9.09 SS G_CDS: -1.31 Total: -10.41 kcal Total: -62.65 1.35 -61.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259772720.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.731 kcal (2) G-P(sol) polarization free energy of solvation -62.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds