Wall clock time and date at job start Mon Mar 30 2020 03:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47548 * 2 1 4 4 C 1.53004 * 109.47195 * 120.00186 * 2 1 3 5 5 C 1.52999 * 109.47396 * 174.14228 * 4 2 1 6 6 H 1.09001 * 110.84501 * 51.93316 * 5 4 2 7 7 S 1.83960 * 110.78630 * 288.52126 * 5 4 2 8 8 C 1.83952 * 94.80382 * 207.23062 * 7 5 4 9 9 C 1.54258 * 102.58300 * 34.49447 * 8 7 5 10 10 H 1.09005 * 108.75610 * 214.73175 * 9 8 7 11 11 C 1.50696 * 108.87020 * 96.28834 * 9 8 7 12 12 H 1.08000 * 120.00424 * 236.92450 * 11 9 8 13 13 C 1.37878 * 119.99766 * 57.20004 * 11 9 8 14 14 N 1.31514 * 120.00310 * 359.72852 * 13 11 9 15 15 Si 1.86806 * 119.99973 * 179.72204 * 13 11 9 16 16 H 1.48498 * 109.46896 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.46941 * 119.99697 * 15 13 11 18 18 H 1.48494 * 109.47132 * 240.00165 * 15 13 11 19 19 C 1.52331 * 112.58722 * 335.46949 * 9 8 7 20 20 H 1.08993 * 108.87056 * 120.81787 * 19 9 8 21 21 N 1.46907 * 108.87071 * 239.32668 * 19 9 8 22 22 H 1.08996 * 109.47793 * 179.29011 * 1 2 3 23 23 H 1.08997 * 109.46972 * 299.29111 * 1 2 3 24 24 H 1.08999 * 109.47243 * 59.28606 * 1 2 3 25 25 H 1.09003 * 109.47216 * 239.99908 * 2 1 3 26 26 H 1.08997 * 109.47140 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46927 * 299.99926 * 3 2 1 28 28 H 1.08999 * 109.46590 * 60.00075 * 3 2 1 29 29 H 1.09003 * 109.46967 * 54.14452 * 4 2 1 30 30 H 1.08999 * 109.46825 * 294.14530 * 4 2 1 31 31 H 1.09006 * 110.79184 * 276.21808 * 8 7 5 32 32 H 1.09002 * 110.78840 * 152.76418 * 8 7 5 33 33 H 0.97001 * 120.00261 * 180.02562 * 14 13 11 34 34 H 1.00892 * 110.99829 * 298.54905 * 21 19 9 35 35 H 1.00901 * 110.99714 * 62.50015 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5629 -0.8501 1.1779 6 1 4.0251 0.1172 0.9807 7 16 4.0549 -2.0807 -0.0979 8 6 5.6416 -2.5247 0.7202 9 6 5.2905 -2.4115 2.2180 10 1 6.1644 -2.0439 2.7560 11 6 4.9379 -3.7802 2.7407 12 1 3.9781 -3.9499 3.2059 13 6 5.8428 -4.8146 2.6302 14 7 7.0116 -4.6081 2.0638 15 14 5.4087 -6.5094 3.2851 16 1 4.0446 -6.4791 3.8711 17 1 5.4480 -7.4942 2.1745 18 1 6.3882 -6.9021 4.3299 19 6 4.1214 -1.4696 2.4754 20 1 3.3252 -2.0236 2.9726 21 7 4.5698 -0.3866 3.3609 22 1 -0.3634 -1.0275 -0.0127 23 1 -0.3633 0.5028 0.8963 24 1 -0.3634 0.5249 -0.8835 25 1 1.8933 -0.5139 -0.8900 26 1 3.1300 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9562 0.8900 29 1 1.5936 -1.7143 1.3032 30 1 1.7648 -0.1505 2.1361 31 1 6.4263 -1.8172 0.4522 32 1 5.9352 -3.5436 0.4677 33 1 7.6481 -5.3359 1.9857 34 1 4.8753 -0.7504 4.2510 35 1 5.2975 0.1594 2.9245 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259845435.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:23 Heat of formation + Delta-G solvation = -28.262663 kcal Electronic energy + Delta-G solvation = -14625.109791 eV Core-core repulsion = 12361.923322 eV Total energy + Delta-G solvation = -2263.186470 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.49104 -35.72134 -32.88934 -29.83465 -29.59117 -27.00418 -25.45910 -24.26052 -22.03135 -19.75749 -19.00154 -16.63007 -15.84207 -15.27817 -14.83200 -14.59736 -14.14213 -13.41306 -13.14802 -12.93247 -12.67283 -12.18632 -12.07885 -11.72115 -11.59041 -11.13843 -11.01283 -10.97849 -10.60546 -10.50677 -10.33230 -10.30796 -10.09547 -9.78289 -9.21955 -8.92932 -8.44902 -7.97027 -6.74026 -6.15036 -4.21528 2.85479 3.23154 3.32040 3.36122 3.44947 4.33679 4.95205 5.13243 5.16329 5.17962 5.42052 5.63067 5.68850 5.75588 5.78973 5.96936 5.98679 6.10928 6.20282 6.24870 6.35289 6.40763 6.51018 6.57686 6.66744 6.69361 6.83211 7.33029 7.50357 7.72276 7.82471 8.00374 8.24531 8.79881 9.43905 10.90850 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.036245 B = 0.007688 C = 0.007534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.344193 B = 3641.373155 C = 3715.568036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 C -0.144 4.144 4 C -0.089 4.089 5 C -0.015 4.015 6 H 0.085 0.915 7 S -0.351 6.351 8 C -0.022 4.022 9 C 0.010 3.990 10 H 0.033 0.967 11 C -0.502 4.502 12 H 0.060 0.940 13 C 0.059 3.941 14 N -0.892 5.892 15 Si 0.895 3.105 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.284 1.284 19 C 0.093 3.907 20 H 0.085 0.915 21 N -0.846 5.846 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.074 0.926 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.122 0.878 33 H 0.262 0.738 34 H 0.340 0.660 35 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.769 8.349 -1.729 10.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.202 4.202 4 C -0.127 4.127 5 C -0.144 4.144 6 H 0.103 0.897 7 S -0.126 6.126 8 C -0.170 4.170 9 C -0.011 4.011 10 H 0.051 0.949 11 C -0.541 4.541 12 H 0.078 0.922 13 C -0.143 4.143 14 N -0.531 5.531 15 Si 0.722 3.278 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.210 1.210 19 C -0.020 4.020 20 H 0.103 0.897 21 N -0.374 5.374 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.093 0.907 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.140 0.860 33 H 0.072 0.928 34 H 0.153 0.847 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.900 8.130 -2.851 11.689 hybrid contribution 1.531 -1.180 1.251 2.302 sum -6.369 6.950 -1.600 9.562 Atomic orbital electron populations 1.21812 0.95652 1.01532 1.01137 1.21159 0.95189 0.96278 0.99137 1.21851 1.01344 0.96007 1.00959 1.21518 0.92731 1.00953 0.97541 1.23818 0.98224 0.97996 0.94362 0.89709 1.87427 1.32395 1.54161 1.38592 1.24339 0.89854 1.05121 0.97668 1.19982 0.93325 0.96075 0.91724 0.94911 1.21269 1.01459 0.93533 1.37809 0.92195 1.24998 0.94917 0.99192 0.95149 1.69903 1.06927 1.32567 1.43710 0.86474 0.78557 0.84039 0.78679 1.19625 1.20890 1.21043 1.22365 0.98033 0.89985 0.91567 0.89707 1.59224 1.44772 1.25997 1.07420 0.92767 0.92956 0.93167 0.90749 0.92458 0.93370 0.92913 0.91203 0.91004 0.93360 0.86030 0.92787 0.84740 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.19 37.16 0.34 -1.37 16 2 C -0.10 -1.38 2.87 -90.62 -0.26 -1.64 16 3 C -0.14 -1.82 8.99 37.16 0.33 -1.48 16 4 C -0.09 -1.41 4.03 -26.73 -0.11 -1.52 16 5 C -0.02 -0.27 2.79 -26.07 -0.07 -0.35 16 6 H 0.08 1.48 6.19 -51.93 -0.32 1.16 16 7 S -0.35 -7.40 21.95 -107.50 -2.36 -9.76 16 8 C -0.02 -0.51 6.41 37.82 0.24 -0.27 16 9 C 0.01 0.24 2.37 -91.46 -0.22 0.03 16 10 H 0.03 0.82 7.79 -51.93 -0.40 0.42 16 11 C -0.50 -13.16 8.47 -34.44 -0.29 -13.45 16 12 H 0.06 1.58 7.19 -52.49 -0.38 1.21 16 13 C 0.06 1.57 5.03 -17.82 -0.09 1.48 16 14 N -0.89 -24.55 11.44 55.43 0.63 -23.92 16 15 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 C 0.09 1.84 2.98 -67.39 -0.20 1.64 16 20 H 0.08 1.82 6.78 -51.93 -0.35 1.47 16 21 N -0.85 -14.42 8.94 -4.40 -0.04 -14.46 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.07 1.16 7.40 -51.93 -0.38 0.77 16 26 H 0.06 0.77 6.47 -51.93 -0.34 0.43 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.12 3.24 5.96 -51.93 -0.31 2.93 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.34 5.70 9.04 -39.30 -0.36 5.35 16 35 H 0.33 5.27 8.91 -39.29 -0.35 4.92 16 LS Contribution 285.48 15.07 4.30 4.30 Total: -1.00 -26.52 285.48 -8.51 -35.03 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -5.71 Total: 9.81 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -0.32 Total: -16.93 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.59 Total: -38.37 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -7.40 SS G_CDS: -2.36 Total: -9.76 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -26.52 -8.51 -35.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259845435.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.768 kcal (2) G-P(sol) polarization free energy of solvation -26.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds